Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0504100 | OGI:02052150 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:17905115-17909140 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCTTCAGCCGTCTCCACTTCTCCACTTGATTGGCAGTCGCCACTGACCAACTTTCCAAAACCTCGTCGCCGGCGGCCATGGCCTACCTCCCGCCGCACAAGCGCCACTCCAACGCCTCCACGCCCGCCCCGACCCCGGCCCCTCCTCCTCCCTCCCTCTCCTCCTCCCTCCGCTCGCTCTCCCTCTCCTCCTCCCCACGCGGCCGCCACCACCGCGGCGCCACCACCCGCCCTTCCAGCAAGATCGTCCACGCCGCCGGCTGCGTCTCCCGCTGGTCCACGCTCCCGCCCTTCCCCGACGACGACGGCGACGACGACGGGTCGCTCCGCCTCGAGCCCTTCCCCTGCGACCCCATCGAGCGCAGGACCGGCGCCAAGCCCCTCGCCCTCGTCTCCTCCTCCGCCGCCGAAGCCTCCTCCCCCTGCTCCGCGGCGGCCGCCGCATCCACCGTCACCGAGAGGTTCTTGCCGGACCTCCTCGCCGCGGCTTGGAGGGCGAAGGCGGGCGATGTGCCTGAGGAGGAGGAGGAGGTGAAGCTGAGCGTCGTGGCCAGGGTGGGGAAGGTGCTCTTCGAATCGTCGTGAGTCTCCTTAATTTCTCCCATCCCATCTACCATTTCTCGTTGGATTCGTGGAAGAATGATTGGGTGTTGATCACAAAGAGTTGCTGCTGTTATTATTGATTGATTTTGTGTAGCGGCGGCGGATCACCCGTCTCCATGAACTCGCTCCGCGAAGCCGTGAAAGCAGGAGAAGAGGGCTCGAGGAGCAATCTTCATAAATCGTTCTATACCAATGTGCCTAGTGAGTGCTTGGATGATATGGAGCGATCCGCTGCGGAGAAGATGGGGCTGGAGTTTGATTCCTCCAAAGAGCACTACCATGTGAAGGTTTGCGCGTCTGGTAGCATGTCAATTACGATGTTTTGGGTTTATAGTTGGGTGAAATTAACTTTGGGGCCTGTAAATGAATTGTAGGTCTTTGACAAGCGTCAAAGTGATTCTACAATAACGTGCAAATGCACCGTGCAAGAAGATGGAAAGCTTGCTATCCATAAGGTGTGCTTAACTGCTTATCGTTCTAACCTTAGCCTCTTACCTTTTGTCTTATTAATGTTCTGCATCATAGATTCATATGAGTAGTTTGCACATTGTATTTTAATTTTGGCTCTACTTGTGTAGATTATTTTTCTGAGTATGATTGCTGAATGCCCGAAAATAGAGTGTTGGGATTGTTAGCATTTTGACTTGTACCCATGAGAAATAGGAACAATGAGGCTTCATCTTTGTGAGATGTATGGCATAAATCATAGCTACCGGTCTATCATAGGGATCTTGATTCGTATGAGTTTTTTGATAAAGTGAGAAGCTGGCTCATATAAACTTGTCTACTTCATTTGTGGTACTAGATGAAGCCTATTAGCTACTTTGTCCTTCCAGGTGTTGTGATTCCCAAAATATATGCCTTTAATCATTTTTGAGGTCGCTAGTTCTTACTGATTGGTCTTGTGGATGCAACATTATAGTAAATCTACTAATGATGGATTAGCTCGATTAGCTACAAACTTCCAATACTATAGACTGGAAGCCTACACTATCAGTAAGCAAGATAATATACTATGTGCCTCTCAAAATTCCAATGATTTGTCATCTAGCACTTACTCATAGCCTTTTTTTTTTCCTGTAGTGGAACTTCTTTAGGATAGTAACTTCTCACAATTGAACCTTACATTGTCAGTTCGCAGTAGCACTATGCAACTCTTTCATGCTAACTATAATTCTGTGATGCAATATGTGGTTTTGTTTGGTTCATTGAGAATAAGTGCCCTGTAGATGCCAAGGAGTTGCTCAAGTGGGCTTTGAACGTTCCAAAAGGTTGGAGGCCCATTTACAATGCATACATGTGAGAAGGAGAGTACATATTCTGGAGTGTATCAGTACAGGGATACTTAGGAAGTTTGTGTACAGTGTACTTACAATACATCTGTATGTGCACTTACAAAGTATGTACAGTTGAAGAGGTTTAGATTTGAATGAGGCTATCTGTACATACACTTGAAGTATGTATATTTGAAGGGATTTCTGAAATGTTCGTGCCATAAAATCTATCTAATCATCACCAACTTTCTGAACTTAAATTTTTATTTTGAAAAGCTGAAATATAACCAGTAACTAGCAAGTCCTAATTATGGGCCACATTGCACAGTAATATTCAATTTTCCATGTTTTGTTGAATTCGATAGCCTATGGTACACAGCCAATGCCAAACACTATACTCCCTCCATCCTTAAGAGATTCTGGCCCCTTCATTTGGGGACGGAGGGAATATTTTGGTTGTCAATTGTAAGAAATTTGTATCTATTAGTAGAAAAGGTCTGGTGCCTTTTTTCCTTCATTGAAAGAGTCATCTTTTGTGTCCTTTGCTAGGAGTACAGTAGACCTAGCATATCTTTCCTTGGATGGTTGTATCTGAGTTCTAATGTAATCCGTTCTTGATTCAGCCTTGAACTATTACCAGGTTACATTATATTTTGTTTAGATGACGATTGAATTGACAGCAATCAAATCAGGCCTGTGTTAATGTGATCATGTCCTATGTCTATTCTACTGAAGAAATTTCATGACAGTGGTTTTTGTTTCTTCAGTTTTTATGAACTGCAAATTTTATGTTAAAAGCATCTCATATAATTAATTGGTAAGTTTGTTAAATGCAAATTTTACCCGTGTAGGATAAATAAAACTTTGTGTGCGTTGCTATATCCTTAAAATATATATTATTCAATAGAAGAACGAACTCTTTGGCTTAACATGTTTGTTTTACACTGTCATACTTTTCCATGCAGGTTCAGTTGAACCAGGTACGCCACTTGGTGGAAGATATATCCTGTCTGTTCAAGGATCTGGACCTGAGGCTGATGTTGTCTACCAAAAGAATCCTTAAGAACTTAGATGTGAGTTGGGTTTTGTTTGAAAATTCTGATCCTTTATGTTATGAGACATTTTTGGCAAAGTTATTTGGTTTTTGCAGGCTGAAGTGAAAAATGCAATAAATTGCTTGGTATCTTCTGCTGTTATTGATCCTGATGTCAAAGGTGGACTTAGATGGCCTCTTGGGAAAGAATCGATTGATGAGAGGTTCAGCATAGTTGGAGTGTGGCATACAAACTACAAAGCTTTCAGAAATGAGAAGTTGAGGCTCAAGCTAAGGCATGCTGACCGGTTTGACCATCGAAGCTCAACTGGAGAGGTTTCTAATGAAGTTACCTTTAAACTAATTGGCATATCTGCAAGTCTGGAGGTAAGTAAAATCTGCTCGTAAGTTAATGCGTATGTGCTGTTCTTCAGCATTTACACTTCAGTTTACATTCCTAATAAGGCTATGATCCAAAGTCCGCCTCCGCTGTGTACTGCATATCAATTATCATGTTAATATCTAAGATCCCATTTTACCGACATGGGGTCAACCAGAATTGGAATATGTGGCTAATAATTTCTGGTCAACTGTGCAGCAAACGGCATTATGAGTTAATGACCTTTGTAAGTCTTGTTGTTTTCCAGGCTGTTGATCAGGAGGCGAATTCTCTGCAGGAGATGCTGGAGTCTGTGGTAGGAATGATCTGGGAGAGCGGTTTGAGCTACAAGAAGGCGCCCTGAGCACAGTTATGCCGAGTGGCGACAAGTAGACAATGCTACAAGAGCTTCTTGCCGATGTTACCGTCTGACTACCTTCTACCCTGGAGCTAACGGGCGTTGATCTCAGCCCACCCCATCATGTACAGTTTCAGTTAGCCTGTCTCTACTGTAGTGTCAGTGTGTCATTCTGGTTAGCAGGTTAAGTAGTAGTGAGTAGTCTATGGGCATGGTCGCATGGTATGGTAGGTTTTCCACTTACTTCCTTGCTCCTTGGCGTCATAGGTTGATCGAACCACCTACATGAGACGCTAAATTCAAGTGAAGTTGAAATGACTATGCAATTATGCATTCTTCTGTTAAACGAGAATGGCATATTTTATAATATAACTTTGAGT
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| CDS seq | ATGGCCTACCTCCCGCCGCACAAGCGCCACTCCAACGCCTCCACGCCCGCCCCGACCCCGGCCCCTCCTCCTCCCTCCCTCTCCTCCTCCCTCCGCTCGCTCTCCCTCTCCTCCTCCCCACGCGGCCGCCACCACCGCGGCGCCACCACCCGCCCTTCCAGCAAGATCGTCCACGCCGCCGGCTGCGTCTCCCGCTGGTCCACGCTCCCGCCCTTCCCCGACGACGACGGCGACGACGACGGGTCGCTCCGCCTCGAGCCCTTCCCCTGCGACCCCATCGAGCGCAGGACCGGCGCCAAGCCCCTCGCCCTCGTCTCCTCCTCCGCCGCCGAAGCCTCCTCCCCCTGCTCCGCGGCGGCCGCCGCATCCACCGTCACCGAGAGGTTCTTGCCGGACCTCCTCGCCGCGGCTTGGAGGGCGAAGGCGGGCGATGTGCCTGAGGAGGAGGAGGAGGTGAAGCTGAGCGTCGTGGCCAGGGTGGGGAAGGTGCTCTTCGAATCGTCCGGCGGCGGATCACCCGTCTCCATGAACTCGCTCCGCGAAGCCGTGAAAGCAGGAGAAGAGGGCTCGAGGAGCAATCTTCATAAATCGTTCTATACCAATGTGCCTAGTGAGTGCTTGGATGATATGGAGCGATCCGCTGCGGAGAAGATGGGGCTGGAGTTTGATTCCTCCAAAGAGCACTACCATGTGAAGGTCTTTGACAAGCGTCAAAGTGATTCTACAATAACGTGCAAATGCACCGTGCAAGAAGATGGAAAGCTTGCTATCCATAAGGTGTGCTTAACTGCTTATCGTTCTAACCTTAGCCTCTTACCTTTTGTCTTATTAATGTTCTGCATCATAGATTCATATGAGTAG
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| Protein seq | MAYLPPHKRHSNASTPAPTPAPPPPSLSSSLRSLSLSSSPRGRHHRGATTRPSSKIVHAAGCVSRWSTLPPFPDDDGDDDGSLRLEPFPCDPIERRTGAKPLALVSSSAAEASSPCSAAAAASTVTERFLPDLLAAAWRAKAGDVPEEEEEVKLSVVARVGKVLFESSGGGSPVSMNSLREAVKAGEEGSRSNLHKSFYTNVPSECLDDMERSAAEKMGLEFDSSKEHYHVKVFDKRQSDSTITCKCTVQEDGKLAIHKVCLTAYRSNLSLLPFVLLMFCIIDSYE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0504100 | OsNip_02t0504100-01 | Chr02 | 17905138 | 17909140 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCTACCTCCCGCCGCACAAGCGCCACTCCAACGCCTCCACGCCCGCCCCGACCCCGGCCCCTCCTCCTCCCTCCCTCTCCTCCTCCCTCCGCTCGCTCTCCCTCTCCTCCTCCCCACGCGGCCGCCACCACCGCGGCGCCACCACCCGCCCTTCCAGCAAGATCGTCCACGCCGCCGGCTGCGTCTCCCGCTGGTCCACGCTCCCGCCCTTCCCCGACGACGACGGCGACGACGACGGGTCGCTCCGCCTCGAGCCCTTCCCCTGCGACCCCATCGAGCGCAGGACCGGCGCCAAGCCCCTCGCCCTCGTCTCCTCCTCCGCCGCCGAAGCCTCCTCCCCCTGCTCCGCGGCGGCCGCCGCATCCACCGTCACCGAGAGGTTCTTGCCGGACCTCCTCGCCGCGGCTTGGAGGGCGAAGGCGGGCGATGTGCCTGAGGAGGAGGAGGAGGTGAAGCTGAGCGTCGTGGCCAGGGTGGGGAAGGTGCTCTTCGAATCGTCCGGCGGCGGATCACCCGTCTCCATGAACTCGCTCCGCGAAGCCGTGAAAGCAGGAGAAGAGGGCTCGAGGAGCAATCTTCATAAATCGTTCTATACCAATGTGCCTAGTGAGTGCTTGGATGATATGGAGCGATCCGCTGCGGAGAAGATGGGGCTGGAGTTTGATTCCTCCAAAGAGCACTACCATGTGAAGGTCTTTGACAAGCGTCAAAGTGATTCTACAATAACGTGCAAATGCACCGTGCAAGAAGATGGAAAGCTTGCTATCCATAAGGTGTGCTTAACTGCTTATCGTTCTAACCTTAGCCTCTTACCTTTTGTCTTATTAATGTTCTGCATCATAGATTCATATGAGTAG
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| Protein seq | MAYLPPHKRHSNASTPAPTPAPPPPSLSSSLRSLSLSSSPRGRHHRGATTRPSSKIVHAAGCVSRWSTLPPFPDDDGDDDGSLRLEPFPCDPIERRTGAKPLALVSSSAAEASSPCSAAAAASTVTERFLPDLLAAAWRAKAGDVPEEEEEVKLSVVARVGKVLFESSGGGSPVSMNSLREAVKAGEEGSRSNLHKSFYTNVPSECLDDMERSAAEKMGLEFDSSKEHYHVKVFDKRQSDSTITCKCTVQEDGKLAIHKVCLTAYRSNLSLLPFVLLMFCIIDSYE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0504100 | OsNip_02t0504100-02 | Chr02 | 17905115 | 17909125 | + | IsoSeq | ||
| CDS seq | CCTTCAGCCGTCTCCACTTCTCCACTTGATTGGCAGTCGCCACTGACCAACTTTCCAAAACCTCGTCGCCGGCGGCCATGGCCTACCTCCCGCCGCACAAGCGCCACTCCAACGCCTCCACGCCCGCCCCGACCCCGGCCCCTCCTCCTCCCTCCCTCTCCTCCTCCCTCCGCTCGCTCTCCCTCTCCTCCTCCCCACGCGGCCGCCACCACCGCGGCGCCACCACCCGCCCTTCCAGCAAGATCGTCCACGCCGCCGGCTGCGTCTCCCGCTGGTCCACGCTCCCGCCCTTCCCCGACGACGACGGCGACGACGACGGGTCGCTCCGCCTCGAGCCCTTCCCCTGCGACCCCATCGAGCGCAGGACCGGCGCCAAGCCCCTCGCCCTCGTCTCCTCCTCCGCCGCCGAAGCCTCCTCCCCCTGCTCCGCGGCGGCCGCCGCATCCACCGTCACCGAGAGGTTCTTGCCGGACCTCCTCGCCGCGGCTTGGAGGGCGAAGGCGGGCGATGTGCCTGAGGAGGAGGAGG
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| Protein seq | PSAVSTSPLDWQSPLTNFPKPRRRRPWPTSRRTSATPTPPRPPRPRPLLLPPSPPPSARSPSPPPHAAATTAAPPPALPARSSTPPAASPAGPRSRPSPTTTATTTGRSASSPSPATPSSAGPAPSPSPSSPPPPPKPPPPAPRRPPHPPSPRGSCRTSSPRLGGRRRAMCLRRRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.147218 | 0.433510 | 2.110994 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g30140 | RBH | 0.128501 | 0.288085 | 0.321309 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0504100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018240 | RBH | 0.212518 | 0.0 | 2.782136 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018390 | RBH | 0.000000 | 3.630386 | 0.820792 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018290 | RBH | 0.000000 | 1.313766 | 3.123746 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018060 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018050 | SBH | 0.609057 | 1.859835 | 3.038056 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0298800 | RBH | 1.9149245 | 8.4579615 | 14.53368 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0017740 | RBH | 0.000000 | 0.148983 | 0.413408 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0316100 | RBH | 1.965832 | 9.324658 | 13.6841925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018270 | RBH | 0.000000 | 0.142967 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017990 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018390 | RBH | 0.478323 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018160 | RBH | 0.0 | 0.000000 | 0.622989 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017880 | RBH | 0.0 | 3.382158 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G018320 | RBH | 0.058819 | 0.376113 | 1.071426 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0018030 | RBH | 0.000000 | 1.718975 | 2.031357 |
