Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0493100 | OGI:02050170 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:17274467-17275865 | ||||||||
| Gene Symbol | OsRALyase, OsFbox090, OsFbox90, Os_F0337, OsFbox094, OsFbox94, Os_F0336 | ||||||||||
| DNA seq | TCAGTCACTCACATGTTCAGGTAGATATAGAGAACAAATGATTTGATCATGCTTTGCCAGATAGTAGTAGCTACTCATTACTGATGGGAAACACCAAATGAAGCAACCAGTATATTTTACATGGATATGGAGAGTCTCGACATTGGGGAAGCATTTGAGGAAGCTTGGAAGCATTCTGGCTTCATAGCGGACTGTGAATTTCACCTCTAGTGCCAAGATCTTGACACTCGGGACAACAGTGCTTGGGCTCAATTTCATCCCCGCCTGCAAATGCGAAGCAAATTACACTAATTGTGTCACATTTGCACGGGAGGAACAGGTCACGATCGAAATCGTATGTGACATTTGGTGGTTGGGATCAAGATCCAGCAATCAAATTATGAACCTGGATGATGGTGCTGCCGATCTCCAGCTCGTGCATTCCAGGCTCCATGAATCCCAGCGACCGCAGCTTGGGCGCATTGCGGATCTTGACCATGGAGGAGAGGCAGCTCCGGTGCTTGCTCGTCATCCAGAGCATGAGCCGCTCCAGGCGCGGCGCGTCCACCACGTCGACGTAGTTGACGACGGTCAGGCAGACCTGCAAGATGCGGAGGCTGCGGCTGGTGAGGCGGACGCGGGCGCCGTCTTGGCACGTGATGATGGCGAGCTTCTCCAGGGCGGGGCTCCTGTCGAGCAGGAAGGCGAGGTCCCGGTCCTCCATGACGACGCAGGAGAGCACCATCTCACGGAGGTGGGGGAAGGCGGCGCCGCGCGGGACGGCGCGGGTGTCCGGGAGGCGCCAGACGCCGACGTGGAGGCGGGTGAGGGAGGAGCAGGCGAAGAGCGCGGCCGGGAGGCGGAGGTCGAGCGGCCACGGGCGGTTGACAAACACTAGGTCCTGGACGCCCTTGGCGGCGAGGGCCTCGAGCCAGCGCGCGACCTCGCCCCGGTGCGCCTCCATGGAGGTGGTGGTGAGGTGCGCGCAGCGGAAGGGGCCCGGGTGCGCGGCGAGGACGCGGGACACGGCGGCAACGACGCCGCCGCCGCCGCGTCCCTGCGGTGCGAGGTGGGCGTCGACGAGCGCCAGGGGCACCGAGTGCCAGACGCCGCGCCAGCGCGTGGACAGCGCGGCGGTGCGCGCGCCGTCCCTGGCGGGGAGGCGGGACACGACGTCGCGGAGGAGCTCGTCGGGGAGGCGGCTGATGCGGTCGACGCCGTCGGCGGGGGCGCGCGCGGCGGCGGCGGGGGCGAGGCGCGGGAGGGTGGAGACGGGCGGGTCCGGGATGGAGTCCCCCACGAGGACCCGCATCAGCTCCATGCCGACCTCCAGCATCTCCGGCGGCAGGCCGCCGCGCTGCATGGAGGATCGCATGTGGTCCATGCTGACGCCGACGAGGGCCTCCTTGCCGAGCTCCAT
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| CDS seq | ATGGAGCTCGGCAAGGAGGCCCTCGTCGGCGTCAGCATGGACCACATGCGATCCTCCATGCAGCGCGGCGGCCTGCCGCCGGAGATGCTGGAGGTCGGCATGGAGCTGATGCGGGTCCTCGTGGGGGACTCCATCCCGGACCCGCCCGTCTCCACCCTCCCGCGCCTCGCCCCCGCCGCCGCCGCGCGCGCCCCCGCCGACGGCGTCGACCGCATCAGCCGCCTCCCCGACGAGCTCCTCCGCGACGTCGTGTCCCGCCTCCCCGCCAGGGACGGCGCGCGCACCGCCGCGCTGTCCACGCGCTGGCGCGGCGTCTGGCACTCGGTGCCCCTGGCGCTCGTCGACGCCCACCTCGCACCGCAGGGACGCGGCGGCGGCGGCGTCGTTGCCGCCGTGTCCCGCGTCCTCGCCGCGCACCCGGGCCCCTTCCGCTGCGCGCACCTCACCACCACCTCCATGGAGGCGCACCGGGGCGAGGTCGCGCGCTGGCTCGAGGCCCTCGCCGCCAAGGGCGTCCAGGACCTAGTGTTTGTCAACCGCCCGTGGCCGCTCGACCTCCGCCTCCCGGCCGCGCTCTTCGCCTGCTCCTCCCTCACCCGCCTCCACGTCGGCGTCTGGCGCCTCCCGGACACCCGCGCCGTCCCGCGCGGCGCCGCCTTCCCCCACCTCCGTGAGATGGTGCTCTCCTGCGTCGTCATGGAGGACCGGGACCTCGCCTTCCTGCTCGACAGGAGCCCCGCCCTGGAGAAGCTCGCCATCATCACGTGCCAAGACGGCGCCCGCGTCCGCCTCACCAGCCGCAGCCTCCGCATCTTGCAGGTCTGCCTGACCGTCGTCAACTACGTCGACGTGGTGGACGCGCCGCGCCTGGAGCGGCTCATGCTCTGGATGACGAGCAAGCACCGGAGCTGCCTCTCCTCCATGGTCAAGATCCGCAATGCGCCCAAGCTGCGGTCGCTGGGATTCATGGAGCCTGGAATGCACGAGCTGGAGATCGGCAGCACCATCATCCAGGCGGGGATGAAATTGAGCCCAAGCACTGTTGTCCCGAGTGTCAAGATCTTGGCACTAGAGGTGAAATTCACAGTCCGCTATGAAGCCAGAATGCTTCCAAGCTTCCTCAAATGCTTCCCCAATGTCGAGACTCTCCATATCCATGTAAAATATACTGGTTGCTTCATTTGGTGTTTCCCATCAGTAATGAGTAGCTACTACTATCTGGCAAAGCATGATCAAATCATTTGTTCTCTATATCTACCTGAACATGTGAGTGACTGA
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| Protein seq | MELGKEALVGVSMDHMRSSMQRGGLPPEMLEVGMELMRVLVGDSIPDPPVSTLPRLAPAAAARAPADGVDRISRLPDELLRDVVSRLPARDGARTAALSTRWRGVWHSVPLALVDAHLAPQGRGGGGVVAAVSRVLAAHPGPFRCAHLTTTSMEAHRGEVARWLEALAAKGVQDLVFVNRPWPLDLRLPAALFACSSLTRLHVGVWRLPDTRAVPRGAAFPHLREMVLSCVVMEDRDLAFLLDRSPALEKLAIITCQDGARVRLTSRSLRILQVCLTVVNYVDVVDAPRLERLMLWMTSKHRSCLSSMVKIRNAPKLRSLGFMEPGMHELEIGSTIIQAGMKLSPSTVVPSVKILALEVKFTVRYEARMLPSFLKCFPNVETLHIHVKYTGCFIWCFPSVMSSYYYLAKHDQIICSLYLPEHVSD |
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| Function | F-box/LRR-repeat protein At3g26922 [UniProtKB/Swiss-Prot:Q9LJF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0493100 | OsNip_02t0493100-00 | Chr02 | 17274467 | 17275865 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGCTCGGCAAGGAGGCCCTCGTCGGCGTCAGCATGGACCACATGCGATCCTCCATGCAGCGCGGCGGCCTGCCGCCGGAGATGCTGGAGGTCGGCATGGAGCTGATGCGGGTCCTCGTGGGGGACTCCATCCCGGACCCGCCCGTCTCCACCCTCCCGCGCCTCGCCCCCGCCGCCGCCGCGCGCGCCCCCGCCGACGGCGTCGACCGCATCAGCCGCCTCCCCGACGAGCTCCTCCGCGACGTCGTGTCCCGCCTCCCCGCCAGGGACGGCGCGCGCACCGCCGCGCTGTCCACGCGCTGGCGCGGCGTCTGGCACTCGGTGCCCCTGGCGCTCGTCGACGCCCACCTCGCACCGCAGGGACGCGGCGGCGGCGGCGTCGTTGCCGCCGTGTCCCGCGTCCTCGCCGCGCACCCGGGCCCCTTCCGCTGCGCGCACCTCACCACCACCTCCATGGAGGCGCACCGGGGCGAGGTCGCGCGCTGGCTCGAGGCCCTCGCCGCCAAGGGCGTCCAGGACCTAGTGTTTGTCAACCGCCCGTGGCCGCTCGACCTCCGCCTCCCGGCCGCGCTCTTCGCCTGCTCCTCCCTCACCCGCCTCCACGTCGGCGTCTGGCGCCTCCCGGACACCCGCGCCGTCCCGCGCGGCGCCGCCTTCCCCCACCTCCGTGAGATGGTGCTCTCCTGCGTCGTCATGGAGGACCGGGACCTCGCCTTCCTGCTCGACAGGAGCCCCGCCCTGGAGAAGCTCGCCATCATCACGTGCCAAGACGGCGCCCGCGTCCGCCTCACCAGCCGCAGCCTCCGCATCTTGCAGGTCTGCCTGACCGTCGTCAACTACGTCGACGTGGTGGACGCGCCGCGCCTGGAGCGGCTCATGCTCTGGATGACGAGCAAGCACCGGAGCTGCCTCTCCTCCATGGTCAAGATCCGCAATGCGCCCAAGCTGCGGTCGCTGGGATTCATGGAGCCTGGAATGCACGAGCTGGAGATCGGCAGCACCATCATCCAGGCGGGGATGAAATTGAGCCCAAGCACTGTTGTCCCGAGTGTCAAGATCTTGGCACTAGAGGTGAAATTCACAGTCCGCTATGAAGCCAGAATGCTTCCAAGCTTCCTCAAATGCTTCCCCAATGTCGAGACTCTCCATATCCATGTAAAATATACTGGTTGCTTCATTTGGTGTTTCCCATCAGTAATGAGTAGCTACTACTATCTGGCAAAGCATGATCAAATCATTTGTTCTCTATATCTACCTGAACATGTGAGTGACTGA
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| Protein seq | MELGKEALVGVSMDHMRSSMQRGGLPPEMLEVGMELMRVLVGDSIPDPPVSTLPRLAPAAAARAPADGVDRISRLPDELLRDVVSRLPARDGARTAALSTRWRGVWHSVPLALVDAHLAPQGRGGGGVVAAVSRVLAAHPGPFRCAHLTTTSMEAHRGEVARWLEALAAKGVQDLVFVNRPWPLDLRLPAALFACSSLTRLHVGVWRLPDTRAVPRGAAFPHLREMVLSCVVMEDRDLAFLLDRSPALEKLAIITCQDGARVRLTSRSLRILQVCLTVVNYVDVVDAPRLERLMLWMTSKHRSCLSSMVKIRNAPKLRSLGFMEPGMHELEIGSTIIQAGMKLSPSTVVPSVKILALEVKFTVRYEARMLPSFLKCFPNVETLHIHVKYTGCFIWCFPSVMSSYYYLAKHDQIICSLYLPEHVSD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29150 | RBH | 0.0 | 0.000000 | 0.327042 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0493100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017670 | RBH | 0.000000 | 0.0 | 6.043166 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0017800 | RBH | 0.000000 | 0.0 | 1.557183 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017710 | RBH | 0.0 | 0.0 | 4.134007 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017540 | RBH | 0.471548 | 0.0 | 12.115573 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0286700 | SBH | 0.1483715 | 0.1109855 | 36.684801 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0017320 | RBH | 0.0 | 0.0 | 0.576773 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0308000 | RBH | 0.10133 | 0.1693475 | 5.522707 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006110 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017450 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017900 | RBH | 0.0 | 0.400823 | 2.304703 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017630 | RBH | 0.214171 | 0.0 | 3.006072 |
