Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0480466 | OGI:02048170 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:16503646-16507591 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATACAAACATGTTGTACTAGATTAGTAGAATTATTGTTTTATTACGTTTTCTTCTTTCTTTTTGTAGTTGTCGCCAATGAGATCGAAGCCTTGTATGAGCTTTTCAAGAGGATCGATGGTGCCATAATCGAAGATGGCAAGATCAACAAGGTACGCACGCGTGTACATGGTGTTTAACTAGGTTACAAATGCATGTTGATTAATTAGTAGAATTATTGTTTGGTTTACACATACCTTGAAGCATGCGTACATGCATGCATGCATTTGTTCGCCCTTGATGATGGTACATATCAATCAGAAATTATACATGCATGAATAAATCATATCTATGTTTACTCACTGCATGCTATGGCTCACTAATCCCAGTCGATTATGAAGCCTCCGTCGTTCAATGATTATTTCTTAATGTTACCAATGAATAATTAGTCTTTGATATCTTGCCAAATTAATTACATTGTCCAAAATTGAAGATTGCCTAATGTTTTCTTCATCGATCTTTGCCTGATCACTCTGTTAGTTTTGAAGAAACACCAAACACGTGCCTTGCATTTTCTTTGTCATATCGGTACATATTTTGCATCATTGTCTTTCAACTTGAGAGTATTTGGTCCCGAAAAGGGAGGCACCCTATTTGTTGATCTGGTAGTATACACTTGCATGCTTTGATGAGCTTTTTCATTCTCCCTTAATTCGCCTAGAATGAACCAGAGGATTTTTGCACTTTGGTCTTCATGTAAATAAACCAGCTCTTCAGTATGCCACATGTCATAATCTAAAATGTCCTAAAATGCAGATATCTCATGACTCAAATAGGATTTATTTAGAGTTCGGACTTAAGGACACATATGATTCAATACTAGTGTTTGAGAGGAGATGATCGACGAATGTTGACAAGATACGTAAAATGAGGTGAACCATTAACGTACGATTAATTAAAAATTAATTATTGTAAATATGAAAAATTGATTAATATGACTTTTTAAAATAACTTTAGGACAGAATATTTTTTTTAAAAAAATGCACCATTTAGCGGTTTGGAAAGTGTGCACATGGGAAACAAGGGATCTTTCCCTTCAATCTGTTAAAACAAACAAAGATGAAGTTGTCAATATGTGTGTATGGACAAAGGAGTGGACTGGCTGCTTTTCTCACTATGGTATTTTTGCCATTTTGCTTTGTAGGTATTCGATTTGTTTGACATGAAGCATGAACAAGCTCTCGGATTTGAAGAGCTTGCAGTAGCTTTATCCATCTTCCATCCTGACGCTCCCATTCATGACAAGATTAATTGTAAGTTGATGCCAGTTACATAGTTTATGTCTAATGACTTCAAAAGGAAATGAACAACCTTAAGCAAAGACTATTATGTCCATTCTCAACTGATTGGCACTACTGAATTTGACTACTCAGACTTCCAGTGCTAACAATTGTTGACATGGTAACACAAAGATGAAACTGCTGAATTTGAAAAAAAAATTAACATCATGAGAAAATAGTATCTTGATTTTATGATGTCATTCTTAGTTTCTTGTAGTCAAGAGGTTCATGTATCCTATTTGAGTATATACATGGACACTCCAATTTGTAATATTGTCCACATTTTAAACATGTCATTTTATTACTTGATTTTTTCCAGTAATTATCCAGTTCTATAGATGCTATAGTTTGTCAATGAGTCGAGCTTTAATAATTATACCATTTTGCAATTTCTTTCATGTTGTACAACATCAAGAATCAAGGTTTTATTGAAAGACACATGAGGTACTTTCTTGACCAAGTTAACACACAACTTACTAGTTCATAGAAGAGCTAGAGCTCTGTTAGTAGTTGGCTACTTCAATGTTTTGAATTTTTCAACCATCAGCTCAAACGATCGGAAGTTTGAGAGTGAATTGAACTAGTGTTGTCAATAATCACACAATTTACATGTGTGTAATCTTAGCTGAAGCAAATGATGGTTGCCATACTGGCTGAATCAGATCTGAACCATACAGACCTGGTCATAGAAACCATCATTGACAAGGTGTGGATTCCATGGCTATTTGTCCTTAAATTATTTTAGTTCCTTTGCAATGTTTGAACTGATGCAATTTTGAGACATGACACTTACTGAATTCTCTCAAATTAAATGTTAACTGCAAATATTTTTCCACTATCATCTTAAGACATTTGAGGAGGCAAATACGAACAAAGAAAGGAAAATTGATTTTGAGGAGTGGCAAGCACTTGTCAACGCCCATCCATGTTTACCGAAGAACATGACTCTGACCTACCTCAGTTAGTAAGACTCTCCTACGTTGGACCCTTTCTTTTGTTCTCCTTTCAAGTACACTATCTTCTTTTGACAACTTTGCTCGAGTGAGTGATAATTTGATCGACTCTTTTGGTAGTGTATTTTGGTGGCGTTAGCTTTTACTTCATGCTAATTGCAAAGGTGTCGCATGATTTGCTTGAGCAGAGATATCACCATGACATTTCCCAAGTTCGCCTTCCACTTTCAAATCCTAAGAGTCCAGCTGGTCAAGCAAGCAATGTTCTGAAGGGATCGTATGGTCGGCGTGTTACTCTTCTTAGCTTTTCCTCTTTTGTAATAATAATACTTTAGCACAAGTGTACAACAACAGGGATCATCTCTTGGGTGTTCATAGATAGTTAATGTGTGGCCTTAAATACCAACCTGACATGACCGAAAAATAGAAGCAGCAAGTGATGTGACCATGGCTATCATTGATACAACCGTTGCTCACATCAAGATCAAGTTGCCCAAGTGTTGGAATCCAATTCGGCCACCTACTACAGTGTTAACTTCAAACGGACGCTACATGTGCATACGAGCTCCGTTTTGGGTCCATGAGTACTTGGTGGAAAGCTCTTGGAGTCCTCTTTCCAACGATTCCAGACTCATTGCTCAATTCCATCTCATAGTCCATGTGTAATGACTTCAGAAGGAAATTAACAACCTTAAGCAAAGACTATTGTGTCCATTCTCAACTGATTGACACTGTTGAATTTTACTATTCAGATTTCCAGTACTAACAATTGTTGACTTGGTAACACGAAGATGATACTACTGAATTCGAAAAAAAAAACTTTTACAGCATGAGAAAATAGTAACTTGATTTTACGATGTCTTTCTTAGTTTCTTGTAGTCAAGAGGTTCATATATCCTATTTGAGTATACACAAAGACACTCCAATTTGTATTGTTGTCCACATTTTAAGCATGTCATTTTATTACTTGAAAATTATTTTTAACTAATTCTTCAGTTCTATAGATTCTATAGTTTGTCAATGAGTTGAGCTTAAATAATTATACCATTTTTGCAGTTTCTTTCCAGATGTATGATATCAAGAATCAAGGTTTTATTGAAAGAGAAGCGGTACTTTTCTTGACTAAGTTATCACACAACTTACTAGTTCATATAAGAGGTAGAGCTCTGTTAGTACTTGGCTACTTCAATGTTTTGAATTTTTCAACCATCAGCTCGAACAATCGGAAGTTTGAGAGTGAATTGAACTGGTTTTGTCACTGACTCACATTTTACTTGTGTGTAATCTTAGCTGAAGCAAATGATGGTTGCCACGCTGGCAGAATAAGATCTAAACCTTACAGACCAGGTTATAGAAACCATCATTGACAAGGTGCGGATTCCATGGCTATTTGTCCTTAATTCTGAGTTTAGTTCCTTTGTAATGTTAGAACTAATGCAGTTTGGAGACATGACGCTTACTGAAATCTCTCATATGAAATGTTAACTGCAATTTTTTCCATTGTCGTCTGAAAACATTTGAGGAGGTAGATACGAAGAAAGACAGGAAAATTGATTTTGAGGAGTGGCAAGCACTTGTCAATGCCCATCCGTGTTTGCTGAAGAATATGACTCTGACCTACCTCCGGTAGTAAGACTCTCCTACGTTGACCCTTTCTTTTGTTATCCTTTCAAGTA
More
|
||||||||||
| CDS seq | ATACAAACATGTTGTACTAGATTAGTAGAATTATTGTTTTATTACGTTTTCTTCTTTCTTTTTGTAGTTGTCGCCAATGAGATCGAAGCCTTGTATGAGCTTTTCAAGAGGATCGATGGTGCCATAATCGAAGATGGCAAGATCAACAAGGTACGCACGCGTTGGACTGGCTGCTTTTCTCACTATGGTATTTTTGCCATTTTGCTTTGTAGGTATTCGATTTGTTTGACATGA |
||||||||||
| Protein seq | IQTCCTRLVELLFYYVFFFLFVVVANEIEALYELFKRIDGAIIEDGKINKVRTRWTGCFSHYGIFAILLCRYSICLT |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0480466 | OsNip_02t0480466-00 | Chr02 | 16503646 | 16507591 | + | RAP2018-11-26 | ||
| CDS seq | ATACAAACATGTTGTACTAGATTAGTAGAATTATTGTTTTATTACGTTTTCTTCTTTCTTTTTGTAGTTGTCGCCAATGAGATCGAAGCCTTGTATGAGCTTTTCAAGAGGATCGATGGTGCCATAATCGAAGATGGCAAGATCAACAAGGTACGCACGCGTTGGACTGGCTGCTTTTCTCACTATGGTATTTTTGCCATTTTGCTTTGTAGGTATTCGATTTGTTTGACATGA
More
|
|||||||
| Protein seq | IQTCCTRLVELLFYYVFFFLFVVVANEIEALYELFKRIDGAIIEDGKINKVRTRWTGCFSHYGIFAILLCRYSICLT |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g27880 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0480466 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017200 | SBH | 0.094915 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0017280 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017180 | SBH | 0.0 | 0.0 | 0.727032 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017090 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016960 | SBH | 0.746675 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0275200 | RBH | 0.049515 | 0.0663025 | 0.0214955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016740 | RBH | 0.0 | 0.127502 | 0.044063 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0295500 | SBH | 0 | 0 | 0.0044235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017270 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017390 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0017180 | SBH | 0.131473 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0016880 | SBH | 0.072764 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017330 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017050 | RBH | 0.0 | 0.0 | 0.000000 |
