Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0467300 | OGI:01024560 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:15726766-15727534 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATAATTAGCAATGAAATAGATTGACACAAATTTAAAGCCGCATCAACACACGTCATACATATTTGAAGCATCAACATCCCTGATACATATTTTCGATAATTTTAAATAAAAGAAATGCAATAACGACTAGGGAACCCATAAGCCAAGCCTTGAGGTCTTCTGTTTCCTTTTTTATCCTGGAAACTCTCTTCTTATGTTTTGCTTCGATTGCCGAGATCTGTGAAGCCATCTGAAATTCTAACTTCATTTTGTCTTCTTCGACTATTGTTCTGTCTACAAAATTTGACCATTGGTACTGCGCCTTGGTAGGGTTGCGTGTACTTGCATGGTCCAATGCAAGCCAGAGCATCTCAAATGCCTTTTGTATTCTTGGTTGCCATTCTTCGTCAACCCAAAACAAAGCGTCGCACTGGTCCTCTTCCTCCAGTGGGCAACCAAGAAACCTTCTTCCGGTGTCCTTCCATTCCCATGCAGTTCTTCTCTTCGGGCGGAGGCCATGACGACATTTCAGCTGGGTACCGGTTTCATCCCCAAAATACTCGCCGTCGTCAATATACATGGGAACTTCCAAGCAAAGTCCAGAACGGTGAAACTAGCAAAAAATCAAATGAACAGAACGAGTCAACTCGAAGTAACGGCGACGCTTAAACTAATAATACTAACGCTACGAACGATTTACACGATCGGACATACCTTGTCTTTCATGTTCGCCAACTGGGGATGCAGCTCAGGCAGAAAGAGAAGAGATGGAATGGTGGAGAACAGGAT
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| CDS seq | ATGAAAGACAAGTTTCACCGTTCTGGACTTTGCTTGGAAGTTCCCATGTATATTGACGACGGCGAGTATTTTGGGGATGAAACCGGTACCCAGCTGAAATGTCGTCATGGCCTCCGCCCGAAGAGAAGAACTGCATGGGAATGGAAGGACACCGGAAGAAGGTTTCTTGGTTGCCCACTGGAGGAAGAGGACCAGTGCGACGCTTTGTTTTGGGTTGACGAAGAATGGCAACCAAGAATACAAAAGGCATTTGAGATGCTCTGGCTTGCATTGGACCATGCAAGTACACGCAACCCTACCAAGGCGCAGTACCAATGGTCAAATTTTGTAGACAGAACAATAGTCGAAGAAGACAAAATGAAGTTAGAATTTCAGATGGCTTCACAGATCTCGGCAATCGAAGCAAAACATAAGAAGAGAGTTTCCAGGATAAAAAAGGAAACAGAAGACCTCAAGGCTTGGCTTATGGGTTCCCTAGTCGTTATTGCATTTCTTTTATTTAAAATTATCGAAAATATGTATCAGGGATGTTGA
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| Protein seq | MKDKFHRSGLCLEVPMYIDDGEYFGDETGTQLKCRHGLRPKRRTAWEWKDTGRRFLGCPLEEEDQCDALFWVDEEWQPRIQKAFEMLWLALDHASTRNPTKAQYQWSNFVDRTIVEEDKMKLEFQMASQISAIEAKHKKRVSRIKKETEDLKAWLMGSLVVIAFLLFKIIENMYQGC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0467300 | OsNip_02t0467300-01 | Chr02 | 15726766 | 15727534 | - | RAP2018-11-26 | ||
| CDS seq | ATGAAAGACAAGTTTCACCGTTCTGGACTTTGCTTGGAAGTTCCCATGTATATTGACGACGGCGAGTATTTTGGGGATGAAACCGGTACCCAGCTGAAATGTCGTCATGGCCTCCGCCCGAAGAGAAGAACTGCATGGGAATGGAAGGACACCGGAAGAAGGTTTCTTGGTTGCCCACTGGAGGAAGAGGACCAGTGCGACGCTTTGTTTTGGGTTGACGAAGAATGGCAACCAAGAATACAAAAGGCATTTGAGATGCTCTGGCTTGCATTGGACCATGCAAGTACACGCAACCCTACCAAGGCGCAGTACCAATGGTCAAATTTTGTAGACAGAACAATAGTCGAAGAAGACAAAATGAAGTTAGAATTTCAGATGGCTTCACAGATCTCGGCAATCGAAGCAAAACATAAGAAGAGAGTTTCCAGGATAAAAAAGGAAACAGAAGACCTCAAGGCTTGGCTTATGGGTTCCCTAGTCGTTATTGCATTTCTTTTATTTAAAATTATCGAAAATATGTATCAGGGATGTTGA
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| Protein seq | MKDKFHRSGLCLEVPMYIDDGEYFGDETGTQLKCRHGLRPKRRTAWEWKDTGRRFLGCPLEEEDQCDALFWVDEEWQPRIQKAFEMLWLALDHASTRNPTKAQYQWSNFVDRTIVEEDKMKLEFQMASQISAIEAKHKKRVSRIKKETEDLKAWLMGSLVVIAFLLFKIIENMYQGC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.365485 | 0.749628 | 3.558364 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g26794 | RBH | 0.247160 | 0.504187 | 0.915992 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0467300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016480 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016620 | SBH | 0.0 | 15.489588 | 2.379666 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016510 | SBH | 1.873870 | 31.916864 | 11.036685 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016400 | SBH | 0.079326 | 0.635251 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0127500 | RBH | 6.793015 | 23.248083 | 6.8079375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009650 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0127100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009680 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009770 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017040 | RBH | 0.259705 | 1.835367 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0016930 | RBH | 0.0 | 0.0 | 0.0 |
