Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0467200 | OGI:01024560 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:15725827-15726670 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACAAAAAAAACAAAAAAAACATTCATTTGGTATGCCCTTGTCAAGTACACATCGTTTTCATACCAGCATCTACTATGAAAGCCTCCAGCGTACTGCAGGCCGTTTGGCCCTGCACAAATGAACCGACATAGTAACCACAATAGATAATACCAAAAAAAAAAAAACTCAATCACCTCAATTGATAGTCTCGGTAAAACAAGCATACTAACCACACTTGATAGTTTCGCGCCGCACACTAGCAAAAAACGATGAAGGGTCTACTTCCTCTTCCATATGACTCTCGGATTCTGTCTCAGTGTCACTGTCGGATTTTACCTCTTCATCTATGTTAACACAAATCAATTGCTCAATTCACGGTCATCAAAAAAATGTTAACACAAATCGATGGATGCAAAACATTACCCGTGTCACTGTCGACTTGGATAACAACCTTCCTGTTGTTCACCATAGTCGGCTGCGTAGGCGAGGTCGGGCAGTCGGAGGGGTTGAAGCCACGTCGGAGTCGGCGGCGCAGTCGGCGGGGTCGGAGTCATCGGCGTCGTCGGCGGGGTCGGAGGGGTCGGCGTCGACGGCGGGATCTGAGGGATCGGAGTCGTCGGCGTCGTCGGCGGGGTCGGCGGGGTCGGAGGGGTCGGCGTCGACGGCGGGGTCTGAGGGGTCGACGGCGGGGTCAGGACCGTCGGCGTGGTCGTCGGCGGGGGAGTCGTCGTCGGGGTCGACGGCGGGGTCGGAGGGGTCGACGGCGGGGTCGGAGGGGTCGGCGTCGACGGCGGGATCGGAGGTGTCGGCGGCGGGGTCGGCTGGCTCCTCACATGGTCGGTCAGATGGGATGAAGGTTGTGGAT
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| CDS seq | TCCACAACCTTCATCCCATCTGACCGACCATGTGAGGAGCCAGCCGACCCCGCCGCCGACACCTCCGATCCCGCCGTCGACGCCGACCCCTCCGACCCCGCCGTCGACCCCTCCGACCCCGCCGTCGACCCCGACGACGACTCCCCCGCCGACGACCACGCCGACGGTCCTGACCCCGCCGTCGACCCCTCAGACCCCGCCGTCGACGCCGACCCCTCCGACCCCGCCGACCCCGCCGACGACGCCGACGACTCCGATCCCTCAGATCCCGCCGTCGACGCCGACCCCTCCGACCCCGCCGACGACGCCGATGACTCCGACCCCGCCGACTGCGCCGCCGACTCCGACGTGGCTTCAACCCCTCCGACTGCCCGACCTCGCCTACGCAGCCGACTATGGTGA
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| Protein seq | STTFIPSDRPCEEPADPAADTSDPAVDADPSDPAVDPSDPAVDPDDDSPADDHADGPDPAVDPSDPAVDADPSDPADPADDADDSDPSDPAVDADPSDPADDADDSDPADCAADSDVASTPPTARPRLRSRLW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0467200 | OsNip_02t0467200-01 | Chr02 | 15725827 | 15726670 | - | RAP2018-11-26 | ||
| CDS seq | TCCACAACCTTCATCCCATCTGACCGACCATGTGAGGAGCCAGCCGACCCCGCCGCCGACACCTCCGATCCCGCCGTCGACGCCGACCCCTCCGACCCCGCCGTCGACCCCTCCGACCCCGCCGTCGACCCCGACGACGACTCCCCCGCCGACGACCACGCCGACGGTCCTGACCCCGCCGTCGACCCCTCAGACCCCGCCGTCGACGCCGACCCCTCCGACCCCGCCGACCCCGCCGACGACGCCGACGACTCCGATCCCTCAGATCCCGCCGTCGACGCCGACCCCTCCGACCCCGCCGACGACGCCGATGACTCCGACCCCGCCGACTGCGCCGCCGACTCCGACGTGGCTTCAACCCCTCCGACTGCCCGACCTCGCCTACGCAGCCGACTATGGTGA
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| Protein seq | STTFIPSDRPCEEPADPAADTSDPAVDADPSDPAVDPSDPAVDPDDDSPADDHADGPDPAVDPSDPAVDADPSDPADPADDADDSDPSDPAVDADPSDPADDADDSDPADCAADSDVASTPPTARPRLRSRLW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0467200 | OsNip_02t0467200-02 | Chr02 | 15725827 | 15726670 | - | IsoSeq | ||
| CDS seq | ATGGTGAACAACAGGAAGGTTGTTATCCAAGTCGACAGTGACACGGATGAAGAGGTAAAATCCGACAGTGACACTGAGACAGAATCCGAGAGTCATATGGAAGAGGAAGTAGACCCTTCATCGTTTTTTGCTAGTGTGCGGCGCGAAACTATCAAGTGT |
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| Protein seq | MVNNRKVVIQVDSDTDEEVKSDSDTETESESHMEEEVDPSSFFASVRRETIKC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 15725827 | 15726149 | - | OsNip_02t0467200-02 | OsNip_02t0467200-01,OsNip_02t0467200-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.962297 | 4.214182 | 6.064763 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0467200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016480 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016620 | RBH | 0.0 | 15.489588 | 2.379666 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016510 | RBH | 1.873870 | 31.916864 | 11.036685 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016400 | RBH | 0.079326 | 0.635251 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
