Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0455800 | OGI:02043430 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:15130358-15131464 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTAATCCTCCCCCTTCATCCCGTGTCACAAAGCCACAAAGAAGTTTAGCAGGTCCTCCATGGCAGCCTCTCTGCCACTGTCAGCTGCCATCGTTGGAGCCGAAGAGTCGGTTGACAAGGAGGTCTTGGAGATGGAGTACCTCTTTGAGAAGTTTTTGATGCCAAGTGACTTGTGCAGCAATACTGAATGGCTTGGGATCCCAGAAGAACATGTTAGGAAATTTGGCATGATGTTGGAGGACAGGGACGGTTACTCCGTCATTTTCTTTCAGGACGGTGTGGTGCCTGGGAAGTTGTGGTGCTTTAGGTACTGGAAAAGCAATGGAGTCCATGGCTTGACCAAGGGCTGGAGGTGCTTTGTTAGGGAGAAGGGCCTCAAAGCCGGAGACACCATCTCCTTCTTCCGAGGATCTGCATGTGGCCGTCTCTTCATCTGCTGCAGGTTAGGCACCCATGCAACCTTTGCGTCATCCTCCACCTTGCATCATGGCTTTTCTATGCCCCCACCACCTGCCCGCCCGCTGGTGGGTCTTCAATCTGGCATGTTGGCAAGAGATGTCCCATCATTAGGACAAGCTAGGTTGCATGATGGAAATCAAGATGGAGGCGGTGCACCATCAAGACATGTTCCATCCTCAGGACGACGTGTGGAGGCACAGCTATCACGTGTGTCGTCGCGCCGTCAACGCCGTACTATGAAGCACTCGATACCAGAGCCCACGATAGAGACGCCACCAATTCTTGAGTCGATGTTCCTCATAGCCGCACCACCGGCAGTGAAGTGCTTACGGCTTTTTGGCGTCAACATCTATGTGTTGCCTGTGTCCTCTAGTGGCCAGCCAAAACAAGAATCCAGCCCATAATACCAGGCACCATAATTATGGACACCCCATTGAAGAGGATCAGAGCGTGTTGGAGGCGACAAATGTTCCTCAATTGTATCGTTTGGTTCTACATCATTCTTAGATCATTGTGGTTTCAATTATTGTAATTCTTAGTTTGTTATGATTGGTTTTCTATTGGCAATTATTGTCTTTTTGGCAGTTATTTTAGCATAAGAAATTATTTTGTACCATCTTCATTTATTAATTTCTTTTGTTTCATTCC
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| CDS seq | ATGGCAGCCTCTCTGCCACTGTCAGCTGCCATCGTTGGAGCCGAAGAGTCGGTTGACAAGGAGGTCTTGGAGATGGAGTACCTCTTTGAGAAGTTTTTGATGCCAAGTGACTTGTGCAGCAATACTGAATGGCTTGGGATCCCAGAAGAACATGTTAGGAAATTTGGCATGATGTTGGAGGACAGGGACGGTTACTCCGTCATTTTCTTTCAGGACGGTGTGGTGCCTGGGAAGTTGTGGTGCTTTAGGTACTGGAAAAGCAATGGAGTCCATGGCTTGACCAAGGGCTGGAGGTGCTTTGTTAGGGAGAAGGGCCTCAAAGCCGGAGACACCATCTCCTTCTTCCGAGGATCTGCATGTGGCCGTCTCTTCATCTGCTGCAGGTTAGGCACCCATGCAACCTTTGCGTCATCCTCCACCTTGCATCATGGCTTTTCTATGCCCCCACCACCTGCCCGCCCGCTGGTGGGTCTTCAATCTGGCATGTTGGCAAGAGATGTCCCATCATTAGGACAAGCTAGGTTGCATGATGGAAATCAAGATGGAGGCGGTGCACCATCAAGACATGTTCCATCCTCAGGACGACGTGTGGAGGCACAGCTATCACGTGTGTCGTCGCGCCGTCAACGCCGTACTATGAAGCACTCGATACCAGAGCCCACGATAGAGACGCCACCAATTCTTGAGTCGATGTTCCTCATAGCCGCACCACCGGCAGTGAAGTGCTTACGGCTTTTTGGCGTCAACATCTATGTGTTGCCTGTGTCCTCTAGTGGCCAGCCAAAACAAGAATCCAGCCCATAA
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| Protein seq | MAASLPLSAAIVGAEESVDKEVLEMEYLFEKFLMPSDLCSNTEWLGIPEEHVRKFGMMLEDRDGYSVIFFQDGVVPGKLWCFRYWKSNGVHGLTKGWRCFVREKGLKAGDTISFFRGSACGRLFICCRLGTHATFASSSTLHHGFSMPPPPARPLVGLQSGMLARDVPSLGQARLHDGNQDGGGAPSRHVPSSGRRVEAQLSRVSSRRQRRTMKHSIPEPTIETPPILESMFLIAAPPAVKCLRLFGVNIYVLPVSSSGQPKQESSP |
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| Function | B3 domain-containing protein Os02g0455800 [UniProtKB/Swiss-Prot:Q6K3B2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0455800 | OsNip_02t0455800-01 | Chr02 | 15130358 | 15131464 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAGCCTCTCTGCCACTGTCAGCTGCCATCGTTGGAGCCGAAGAGTCGGTTGACAAGGAGGTCTTGGAGATGGAGTACCTCTTTGAGAAGTTTTTGATGCCAAGTGACTTGTGCAGCAATACTGAATGGCTTGGGATCCCAGAAGAACATGTTAGGAAATTTGGCATGATGTTGGAGGACAGGGACGGTTACTCCGTCATTTTCTTTCAGGACGGTGTGGTGCCTGGGAAGTTGTGGTGCTTTAGGTACTGGAAAAGCAATGGAGTCCATGGCTTGACCAAGGGCTGGAGGTGCTTTGTTAGGGAGAAGGGCCTCAAAGCCGGAGACACCATCTCCTTCTTCCGAGGATCTGCATGTGGCCGTCTCTTCATCTGCTGCAGGTTAGGCACCCATGCAACCTTTGCGTCATCCTCCACCTTGCATCATGGCTTTTCTATGCCCCCACCACCTGCCCGCCCGCTGGTGGGTCTTCAATCTGGCATGTTGGCAAGAGATGTCCCATCATTAGGACAAGCTAGGTTGCATGATGGAAATCAAGATGGAGGCGGTGCACCATCAAGACATGTTCCATCCTCAGGACGACGTGTGGAGGCACAGCTATCACGTGTGTCGTCGCGCCGTCAACGCCGTACTATGAAGCACTCGATACCAGAGCCCACGATAGAGACGCCACCAATTCTTGAGTCGATGTTCCTCATAGCCGCACCACCGGCAGTGAAGTGCTTACGGCTTTTTGGCGTCAACATCTATGTGTTGCCTGTGTCCTCTAGTGGCCAGCCAAAACAAGAATCCAGCCCATAA
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| Protein seq | MAASLPLSAAIVGAEESVDKEVLEMEYLFEKFLMPSDLCSNTEWLGIPEEHVRKFGMMLEDRDGYSVIFFQDGVVPGKLWCFRYWKSNGVHGLTKGWRCFVREKGLKAGDTISFFRGSACGRLFICCRLGTHATFASSSTLHHGFSMPPPPARPLVGLQSGMLARDVPSLGQARLHDGNQDGGGAPSRHVPSSGRRVEAQLSRVSSRRQRRTMKHSIPEPTIETPPILESMFLIAAPPAVKCLRLFGVNIYVLPVSSSGQPKQESSP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.539039 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0455900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g25820 | RBH | 0.0 | 0.0 | 0.138759 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0455800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015880 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016010 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015930 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0015650 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0248200 | SBH | 0.00837 | 0.013687 | 0.0009225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015450 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0266200 | SBH | 0 | 0 | 0.038663 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0016010 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0015570 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0016070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0015900 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0015610 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G016050 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015780 | SBH | 0.0 | 0.0 | 0.0 |
