Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0307300 | OGI:02033610 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:12057458-12059380 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGAAGCCACGTTTATTACTATTGTACAGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGATAAAGACAGCTAAGTGAAATGTAAATATGCCAAATTCTCTCTCCAATAATGAAAATGCTCCTATATCGTGTTTACCCAACTGTTATGATATCGTGTTAACAAAGATACATCAGATCTTCTCTTTATCTGGTAAGGAGCAAGGACAGAAATGCTCCTATGTCGTAGGGTCGTGCTCCCTACGAGAACTTGAGCACAGCAGCGAAGAAATGCCTCAACACATTGCTGTTGATTTGTTTAAAAAAGCTTCGACAGCCTAACAACTCAACAATCCTTAAAAAGAGTAGTACATATTATGAAGCAACAAGGCTGTATGACTTCCAAAACTTAAACAGCGATGCATGAAATCCCACCTAATATCGTGCAGTTTTTTAGCTGCATCAATAATCTGTGCGATCTTACATATGTTACAGGAAATGAATAAGAATAGCTATCAATTACAATTACAATTACAACAGATTTTGCGAATCTGGATCGCCAAAGGCACATATTGCACTTATTTCAGAGTAATGTGGAGGAAGAATCGCATGGAGTGACAATATTTTCTATTTTCGAACCAACATGCAATGAATTGCTGGTCCCAAAACACAGAGAACCTCGCAGCTCAGGTAAAGCTTCAGTCCATAAGGCTATACAGCTCCGTCGGGAGTTCCAAAGATAGGCCCTCTTTGAAAGATTAGCCCAGGGCTAATTTTGAGAGCTAATGTTTAGTCATGAATTGGTAGGCTAAACATTAGCCTAGGGTGGTATGTTTAGATCCATGGGCTAATTCAAGGCTAAAAGGTGGAGAGAGAGTAGAAAGAGAGGAGAGAGAGAAGGAGAGAGAGAGAGAGCTGCTTTTTGATGGTCCCCACACGAAATTAGCCCCATTAGTACCCCTTAGAGGGGCTAATGTTTTGAGGGGGGCTAATTCATATTAGCTCAAAATTAGCTCACCTGTTTGGATCTCTGAGGGCTAATTTGAGGCTAAAAGGTGAGGGCTAAATATTAGCCCATGAACCAAACAGGGCCATAATCTGTTATATTGCAAGCACAGTGCAAGAAGTTAATACATATAACCCAAAATGGACATGGTGATCAAAATAACAGTAGAGGAAAGAAACGGATGAAACATACCACAGCATGCAACAGTTTATTGTGTAGATGGACACATGCAGATTTTCCTGATATACAAGGAGATTCCTCAAGTGTGCTCTTGTTCCTTAGATCCTCTGACACCGGATAATGCCTGCAGCACCTCCATAGCACAACCATTTCTCGCTACCTTTATTCATGGTCCATCTCAACCGATGCATTGCTACAGCTTTAGGAGGAAATACCTCAAAATTTTCAGGGGATTCGCTACCCCTGCTGGTGCTTGTGCCAAAGTTCTCTTGCATTGAAGGAGCAGCTAAAACTATGGCACCAGTTTCTTGTCCTTCATCAGGTTCATCTTGTTGACCATCTCTGATGCTCGGATTTATAGCACAATTGCATTCTGTATGGTGGTTAAGCAGGCATGTCAGGTACAAGCAAAATGATACAAGTTGCAGGTGACAGCGATTACCTGAGTTGGTAAGAAGTTTCCCTTCTTCTATAACATGCAATTGAGCTACATCTTTGCAAGTTTTAGTAGCCCGTTTGGTCTCCAGAGGAACATTTGACAAAGGAGAGTTTGGTAATGCGATACCAATTTTAATGGTTGTTCCCTCTGATAATGAACCACAAAGAAAATATGGTACACGGTTTCTCCCAGGTTCCTTTTCCTAGAATCTCGGAGTAAGCTACAGTAAGTTGAATATTTATTTAGCAATGTTATAGAGAATCACAATAGCATGCATAAATCAATAGTTTATGTGCTGTTTAGTTTACCTCAAAGC
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| CDS seq | GAAAAGGAACCTGGGAGAAACCGTGTACCATATTTTCTTTGTGGTTCATTATCAGAGGGAACAACCATTAAAATTGGTATCGCATTACCAAACTCTCCTTTGTCAAATGTTCCTCTGGAGACCAAACGGGCTACTAAAACTTGCAAAGATGTAGCTCAATTGCATGTTATAGAAGAAGGGAAACTTCTTACCAACTCAGGTAATCGCTGTCACCTGCAACTTGTATCATTTTGCTTGTACCTGACATGCCTGCTTAACCACCATACAGAATGCAATTGTGCTATAAATCCGAGCATCAGAGATGGTCAACAAGATGAACCTGATGAAGGACAAGAAACTGGTGCCATAGTTTTAGCTGCTCCTTCAATGCAAGAGAACTTTGGCACAAGCACCAGCAGGGGTAGCGAATCCCCTGAAAATTTTGAGGTATTTCCTCCTAAAGCTGTAGCAATGCATCGGTTGAGATGGACCATGAATAAAGGTAGCGAGAAATGGTTGTGCTATGGAGGTGCTGCAGGCATTATCCGGTGTCAGAGGATCTAA
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| Protein seq | EKEPGRNRVPYFLCGSLSEGTTIKIGIALPNSPLSNVPLETKRATKTCKDVAQLHVIEEGKLLTNSGNRCHLQLVSFCLYLTCLLNHHTECNCAINPSIRDGQQDEPDEGQETGAIVLAAPSMQENFGTSTSRGSESPENFEVFPPKAVAMHRLRWTMNKGSEKWLCYGGAAGIIRCQRI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0307300 | OsNip_02t0307300-01 | Chr02 | 12057458 | 12059380 | - | RAP2018-11-26 | ||
| CDS seq | GAAAAGGAACCTGGGAGAAACCGTGTACCATATTTTCTTTGTGGTTCATTATCAGAGGGAACAACCATTAAAATTGGTATCGCATTACCAAACTCTCCTTTGTCAAATGTTCCTCTGGAGACCAAACGGGCTACTAAAACTTGCAAAGATGTAGCTCAATTGCATGTTATAGAAGAAGGGAAACTTCTTACCAACTCAGGTAATCGCTGTCACCTGCAACTTGTATCATTTTGCTTGTACCTGACATGCCTGCTTAACCACCATACAGAATGCAATTGTGCTATAAATCCGAGCATCAGAGATGGTCAACAAGATGAACCTGATGAAGGACAAGAAACTGGTGCCATAGTTTTAGCTGCTCCTTCAATGCAAGAGAACTTTGGCACAAGCACCAGCAGGGGTAGCGAATCCCCTGAAAATTTTGAGGTATTTCCTCCTAAAGCTGTAGCAATGCATCGGTTGAGATGGACCATGAATAAAGGTAGCGAGAAATGGTTGTGCTATGGAGGTGCTGCAGGCATTATCCGGTGTCAGAGGATCTAA
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| Protein seq | EKEPGRNRVPYFLCGSLSEGTTIKIGIALPNSPLSNVPLETKRATKTCKDVAQLHVIEEGKLLTNSGNRCHLQLVSFCLYLTCLLNHHTECNCAINPSIRDGQQDEPDEGQETGAIVLAAPSMQENFGTSTSRGSESPENFEVFPPKAVAMHRLRWTMNKGSEKWLCYGGAAGIIRCQRI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g27140 | SBH | 2.236399 | 2.281820 | 0.822905 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0307300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013860 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0014040 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013860 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013710 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0191200 | RBH | 0 | 0.0059585 | 0.009804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0203200 | RBH | 0.0795135 | 0.319138 | 0.3190875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0014070 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013610 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0014160 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013970 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039880 | SBH | 0.385373 | 1.621924 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013840 | RBH | 0.0 | 0.0 | 0.0 |
