Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0266100 | OGI:02027000 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:9505868-9509878 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATATTAACCAAAATCTTTTTTTTTTCATACAAATTACACGGGGTAATGTTCACCAAACCGAAGAACAAATCATCACAGAAACTAGTACTACAGAGCCATGCCAAATATTTGAGGAACGATCCCGTTACCAGCTTTGGTAAATGTGTTCTGAAATCAATACTAACTTCAGCAGATTACAAAATTAACGTTACATATCTAAAATACCATCACCAGATGCACAGATACAGTTACAAGAAGCCTTCTTCAACAATCCCTCAAATTAAGTGACAGTTGATCTCATTTAAACGATAGCAGCATCATATTCCAATGGATCAGACTGGGCATACTTCATATGCTTCTTAAATAAAAGCCCAAAGAACACAATCAGTGGTTGCCCTCAGGAGGTTGTGCATAGGAGAAAGGAGCCTGTGGAGGTGCTGCTGGAGGTGGAGCAGAAACCGGAGGTGGAGCACCAGAAGTTGGGCCTGCAGGTTGCGGTGGATTTGTTTGATACATGGCTGGAGGTGCCCCACTGTTGGGGATGGGGGCCCCTGGGGCTCCAGATGTTGGAGGTGGTAGTGTCGGAGGCCTTGGGAGAGGTGCCATCTGCATAGGCATAGAACCAGGTGGCATAGAGCCAGGCGGCATGGAACCAGGTGGGGCGCCTGTTTGTGGCATGGTTGGAACATTTGGAGCACCAGGATAACCTGAGGAGCGTACAGAGAAGTCACATAAATAATATACTCGTTATTTGGTTTGATCAAGTGAAATGGATTAATAAGTGGAAAGAACATCAGTCCATGATTAGCGTGCATTTTCTGTAAGTGTATGCAATGGCAAAATGATAACATTAGCAGTAGCGTTCCTTTGGTAAGTGGTAGCTCATCTTCTGTGGCACTGCGGAATGAATTGAAGTACCATGATAGCACTGGATGTAGAGCTCATCTCACCATCCATCATCCACTATCTGGTTTATACAATTCCATGATGAAATATAATTTACTAAGCTACAGTGAGTCAATTAAGCTATTCTAAAGAAATAAATTAAATAAGAAGAAGCTCATAGTTTAGTTAAGTTGTAAGATAAAAATGATGCCCATATTTTCCAAACCATGTCACCAGATCAGTGAAAGTGGTTTTTATACTCAAGGCCTCTACTTTAATAATAGTTGCACATATTTAAAAGTTGAAGGTCGGCTTTATTTTTGTTAACTAATGTGTTTCAAAACTGCAACTTTGGCCACTTATTGCTATTCTGATTTTTTTTTATCAAACACGATATGCTATGGAAGTACTTTTTGAGACAAATCTACACATGGTACCCCATGACCCAATCTAAATAGCTAAAACAATACTAAATATCAGATGATCAAATGCTTAGACTAAGAAAAAATACTTTTTTTTGGATAAACTGTCTATATTTCAAGACCTTAAAAAATGAGTACAGAAAGGTTTGCATTTATCTATAAACTATGATTGGCGGTTAAAACTCAATAAGAGCTCCCTTAGTGTAACTTGGAGGATCAGAAATTTTATTTTGATTAAGAAAGTATTCCTTGAGAGTATCCAAGTCAGTTTTACTATGGTCAAAATCATCAAGTCATATAATTATGGTCTAACATGTGGAAGGCATATGGTTTTGTTCTTAATCTATACTCCTTTTAAAGAAGGCAATGCTGCTGCAGGTGATCGAATTCCCACGTCATTTCCCCTACACTACAGATGTTACAAATCACACTATGAAGTTCTTCAATAGTACACAATAGACCTTTCACACATTGTTGTTTTTGTATTTGGCCTTCAAAAATACAAATTTAATACAGAAAAGTTACAAGATGACTTGAACTGTCAAATATATGTGGTATACATGTTAATGGTAAATACTGTCAAGTGATCTTTCCAATAAGATTGTGATGGGTGTCTTCATTGCAAAATTGAAGTCACATTCTTTCGTATTGAACAACAGCCTATTAAGACATGTATGCTTCATTCTTGTCCATGTGATACATTAACCCAAATAATGTAGTGAACATAGCCTGAACATACTGAGCACCCAGAATGAAGCTATGGAAGAGTTTGTTATCATTATTGCTCCACTTAAATATGTATCGCATTCCTTGTTGAAATCCAATTGGTAGTTTTTTAGCTCCAATGGAAGGAATGAACTATATAAGCTATCAAGATCAGGAAAGTACACACCACAGAAAAAAAAAATTCGCCGGGTCACACCACAGAAATTATATGCCATATAATTTGAATGAGAACTTGGTTAATGATACTGTAATTATGAGCAACAACGAAAATGAGTTCTGTTACCTGGAATACCAGGAGCTGGCAAAATAGGAGGCCTAACGCCTGGCATCAAAGGTGCACCAGGTACTTGAGGAACACCAAGTGGCATGCCAGGTGTTGGCAGAATTGGAAGACGAGGACGAGGCACACCTCCTGGAAATGAGAGAAGATGTTGATTGAAAGGAGCACCAACTTGGAAAGCTGCAGCTTGTCCAAGATGTTCTTTAATTCTTTGATCAATCAAGCTTTGAGTTTGCTGCTCCTCAAATTGTTGATAGTAGGTTCGAACATTTGCCTAGAAATGTTCACATGAAAAGAAAAAGGTCATAACATCTACGCAGATGAATGAGAAAAAAATAGACACCAATTACAAACTGGAATTATTAAGATGAAGAGAATTAAGATAGATACCTTATGTTTGTACCCAGCATTGTGCTGTTTACGGACAGATGGCTGCAGCATTTTTTTTAGAATAAGTTAACAGACATATCAACTATACAAAAAAACTATATATCTAGAACAGAATGCACCACAGAGGCACATATAATTACAAAAGAATTGGATAATCGTCATGGGATTTATAGAGCTTTCAACACTAATCACATACAATTCATGGTATTTGACAGTCTCAAAAGCAACAAAATGATCTATTGAAATTTACAGAAGCAATAAGTTGAAAGTTCGTAAATATTTCACTGCATTGAAGCATTTTTATCTTAAAAATGATGTTATGTAGTTTGCATATATCTCACTGCACATTGCATATACGTAAATAAGTGGCCACCGAGTGCTTAATTGTGTGTTTATTTAGGCTAAGCAATCCAGGGTAAACTAATATCCAGTTACACATTAATTATATGAAGACAACATTAGTTACAGCTATTCACATGTACTTGGCACAAAATTGATTGAATGGCCATGATGGTATTCAGTGGCACAGGAATATCTTCAGAAACAGGCATGAATATACTGTAACATCCTCCCAGTAAAAAAGAACATGTACTGTTGACAGGGAACTGATCTTTAACCACTTCAGCAACAGCATTATACTTGGTAACGCCAATCATGCTATGATTATTTTACTGGGCATAATACTATAGAAACCTAAAATCAAATTAAAGAACTGGCTATCTATAGCAGTGCAAAGTGGAGGGGGAGGGGGAGGAGGAGAAACTCACAGAGTCATGGGTCAGGTAGGTGTCGCAGTAGTCGCAATAGTACCTGCAAAAAGAAAAAGTTAAAACGAGTAAGAGATAGAACAATTAAAACAAGAATAAACACGTTGAAACGGAGCGCCGAGGATGGCAGCAACAAGTAGCAGCAGCGCAAAGGCTCCCCGCAGTGGGCAAAAAACGGCAGCTCTCTCCTCGACTTCTCTACCGCAAATCCCCAAACCCAACCATACACAATACGCAATCCACCAACGCGATGTACGACCTAACCACAAGATTCACGGCGTTCTAAGCTAGGGTCTCGAACCCGAAGGCTCAAACATCGAGCTACGTATACTATCTAGGGTTCGAAACAACAGCCTTCCCACCCACCGCCCCCCACCCCCCATGTTACCTTCCGCTGCGCCCCCAACAGGAGGAGGGACAGAGACACGGATACTCACCGAGGCATCGCGGCGGATGATCTCGTCGGCGACGGCGACGGCGACGGCGACGAGAGCGGTAGGGATCCCTGCCGCGAGCGGAATCGGAGCAGACGACCGCGGCAATGGTGGGGGGGAATTTCGC
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| CDS seq | ATGCCTCGGTACTATTGCGACTACTGCGACACCTACCTGACCCATGACTCTCCATCTGTCCGTAAACAGCACAATGCTGGGTACAAACATAAGGCAAATGTTCGAACCTACTATCAACAATTTGAGGAGCAGCAAACTCAAAGCTTGATTGATCAAAGAATTAAAGAACATCTTGGACAAGCTGCAGCTTTCCAAGTTGGTGCTCCTTTCAATCAACATCTTCTCTCATTTCCAGGAGGTGTGCCTCGTCCTCGTCTTCCAATTCTGCCAACACCTGGCATGCCACTTGGTGTTCCTCAAGTACCTGGTGCACCTTTGATGCCAGGCGTTAGGCCTCCTATTTTGCCAGCTCCTGGTATTCCAGGTTATCCTGGTGCTCCAAATGTTCCAACCATGCCACAAACAGGCGCCCCACCTGGTTCCATGCCGCCTGGCTCTATGCCACCTGGTTCTATGCCTATGCAGATGGCACCTCTCCCAAGGCCTCCGACACTACCACCTCCAACATCTGGAGCCCCAGGGGCCCCCATCCCCAACAGTGGGGCACCTCCAGCCATGTATCAAACAAATCCACCGCAACCTGCAGGCCCAACTTCTGGTGCTCCACCTCCGGTTTCTGCTCCACCTCCAGCAGCACCTCCACAGGCTCCTTTCTCCTATGCACAACCTCCTGAGGGCAACCACTGA
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| Protein seq | MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQVGAPFNQHLLSFPGGVPRPRLPILPTPGMPLGVPQVPGAPLMPGVRPPILPAPGIPGYPGAPNVPTMPQTGAPPGSMPPGSMPPGSMPMQMAPLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPPVSAPPPAAPPQAPFSYAQPPEGNH |
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| Function | U1 small nuclear ribonucleoprotein C-2 [UniProtKB/Swiss-Prot:C5XYW4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0266100 | OsNip_02t0266100-02 | Chr02 | 9505868 | 9509878 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCTCGGTACTATTGCGACTACTGCGACACCTACCTGACCCATGACTCTCCATCTGTCCGTAAACAGCACAATGCTGGGTACAAACATAAGGCAAATGTTCGAACCTACTATCAACAATTTGAGGAGCAGCAAACTCAAAGCTTGATTGATCAAAGAATTAAAGAACATCTTGGACAAGCTGCAGCTTTCCAAGTTGGTGCTCCTTTCAATCAACATCTTCTCTCATTTCCAGGAGGTGTGCCTCGTCCTCGTCTTCCAATTCTGCCAACACCTGGCATGCCACTTGGTGTTCCTCAAGTACCTGGTGCACCTTTGATGCCAGGCGTTAGGCCTCCTATTTTGCCAGCTCCTGGTATTCCAGGTTATCCTGGTGCTCCAAATGTTCCAACCATGCCACAAACAGGCGCCCCACCTGGTTCCATGCCGCCTGGCTCTATGCCACCTGGTTCTATGCCTATGCAGATGGCACCTCTCCCAAGGCCTCCGACACTACCACCTCCAACATCTGGAGCCCCAGGGGCCCCCATCCCCAACAGTGGGGCACCTCCAGCCATGTATCAAACAAATCCACCGCAACCTGCAGGCCCAACTTCTGGTGCTCCACCTCCGGTTTCTGCTCCACCTCCAGCAGCACCTCCACAGGCTCCTTTCTCCTATGCACAACCTCCTGAGGGCAACCACTGA
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| Protein seq | MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQVGAPFNQHLLSFPGGVPRPRLPILPTPGMPLGVPQVPGAPLMPGVRPPILPAPGIPGYPGAPNVPTMPQTGAPPGSMPPGSMPPGSMPMQMAPLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPPVSAPPPAAPPQAPFSYAQPPEGNH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.545041 | 2.556084 | 10.621008 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g16640 | RBH | 3.729003 | 2.175250 | 3.047343 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0266100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0011570 | RBH | 1.352947 | 38.562977 | 8.444850 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0011700 | RBH | 0.910248 | 9.077649 | 5.919886 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011550 | RBH | 1.971264 | 6.147083 | 14.204592 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0011410 | RBH | 0.336967 | 0.206573 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011380 | RBH | 6.077007 | 13.853376 | 14.922696 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0151900 | RBH | 6.6105435 | 14.5803805 | 5.7300615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011220 | RBH | 0.293051 | 0.695571 | 1.067625 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0160600 | RBH | 7.6550195 | 13.3920805 | 12.0223805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011720 | RBH | 0.464334 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0011320 | RBH | 1.312019 | 19.733030 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011710 | RBH | 7.436910 | 29.396854 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0011650 | RBH | 0.853900 | 1.381286 | 2.125561 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0011330 | RBH | 0.372742 | 5.472252 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G011710 | RBH | 0.499709 | 8.025757 | 4.377842 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011500 | RBH | 3.138230 | 12.959764 | 8.082846 |
