Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0241300 | OGI:02023280 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:7991943-7996772 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCCCATACAAAAGCAAGTTCCAGAATATAGTTTCCAACATGTTCCATACAAAAGCACAGAACATGAATACAAAATGATCCATCCACCATTGAACTACACAAGTCCCAGCCGACTACCAAAGTTACTACAGGTAGTGCCAAGTTCCGGCACCAAAAAATTCCACCTAGCAGCCACTACTAAGTCTCAGCCTGCATCTTGCCAATAGCCAGCAAAAAAATTCCACCAAGCACCCACTACACTTCTGGACTGCATCCTGCAGCAGCCAACAACTAGTGCCAAAAAATCCTATGTTCCAGCAACCAACGAAAAAAAAAACTCCGGCCACCAAAAGCGCCAACTTGCAAGCAACCAGCAGCTAGCACCAAGTTCTAGCAGCAACATACACCATACAATAGCAGCCACATACACCACCAAGTTCAACTACACTAACACCAGCCATCAAATTCCAAGCTCATCCACCTCATTCCTGCCATCAAAAGGTGCATGTTTTCAGTTGCTGGTGAATAAAAAGTCCATTTTGTTTGGACTTGGAGGCAAACAAATGAATAAACAGTGTTTAAAGAGTAATAATCCAGCAAGTAAATTGAGTAATAAGTATCTTGATATGCCTCTTTTCCGGCAAGTCCAAACAAATGGATCTTTTCTACTCACAACTAAATCCAAACAAATGGCTCTTTTGCAGCTAATAATCCAGAAAAAATAGAGTATCTAGATCAATTAATCAAATGACTCTTTTCCAGTCACACTAAACAATATCTAATTTCACAGTAACAACAACTATAAACAATCCAGCAAGTAAATTGAAATAGGCAGAGTAATAGGCAATTTTGATACACACCATGAACAAAAAATTCAGCCACCAATGAAACAGTACCTGAGGATACAAGTGCACAAGAGACAAGTTAAAGCTTTGTACCTGAGCATACAACTAGCTTAGGGAGGACTGATCTGACCCTGTCCAAATGCTATCATTTGTCGAAGGAGGCTCTGAGTATCTGCTGCCATCTTCCTCAGGCTCTCAATCTCCTCAGCTTGTTTTTCCACTTTCGCATCAGATTCTTGTGCCTGCGCCTTCAATCTTTCAAGCTCCTCCTGAAAGTACTGCAGACTCTAGCTTCTTTGCATCTAGTTCAGCTTGTATCTCTTTCATCACATTGGTTGTCTTGGCAGCGGGCTGCTGAATTCCGACGTTGCGCAAAAATGTGTTTGACTTCGGCAACACTTTGGAAACAGCTTCAATAGAAGTCTTAGCTTGCTGCCCATCTTCTACTGATGGTGAAGTGAGGGCTTCCCAGGTATGCATATCCTCCTAGCAATCAAAGTAGTTTCAGTTTTGCATTATTATATAAATAAAGGTTCATTGCATAAGGTATTTAATAAAAGAAGGAAAGAAGAGGTAATAGCTTAGTACTTACTATAGCTTTCTTCACAGGTTCACTAAAACCTTTAGTTTTGCTACAATGCAACTCCTTAAAGAGATCAATTGCAGTGGGCTCACTGTCTTTGTATTTTTCTTGCTTCTGCAATGTTGAGAGATGGCATGAGTAATGGTTATGTTAAAGTACATAGATAACACAAAAACATGTCCTCCAGAACAAGCATTCCAGTTGACATTGAGTCTTTTTGTTAAACATTGACAGTGGTTGCCATGTATAAACTTAATTGATGTCACCCCAAATAAGTATAAGCATGACAAGAGCAATCAAACCAAATTGATACAGATTTATGGATAAAACATGAGCATATTTTTACGTGGTCAAAGTGTGAGATAATATGCTACTCTCCCTACTAAAGCTTTAAATCATATAGCATTATGCAGAGCCACTATCAATATGCAGATATATATCTCCACTGGATCTGAACACCTCCATCAGGAAACACAAAAACTACATCCAACTAGATGACATCATCATTTTTTTTCTTACCACGACATAGGCATGTGCAATGTAAGACCGAGATCCGGTACGCTGTTGAAACTGAACTTTTTCACGATTCAGTTGGTTTTGGCACATTTGTCCTGCACATGACACAATTACATAGCATTAGTAATAGAACCACTATGCATCTGTCATTTCCATGCAACATCATTTTCATTTGTTTTCGCAAGTCACTATTACATTAAAAATGCAAATAGAGCTGATCCAAACAGAGCTATAAACTGGACTATGGAATAATTATTTTGCCACCTGACTATCAAATTTATGTTGATGTATCTTAGGAAGCTATGTGGTTTAAAAAACTCAGGAAGATTACATGAATTATCTTATAGTCAATCTGAAAACTACTATAATAAATCTAGAATTATCAGATGTAGCTGGCATGTTCCAATTCCTACTGACAGATTCAAAAGATCTCAAATGTACCTCATATCCAATATGTGTATATCCAGCCAAACATGACTTTGTGCTCGAATCCAAGTAATAAGCTCACACAAAATGAAATCTGCTAAACAGTACCTTGTGCTCTGGGCTTGACCACATATCTACCAATTTTGTCCATTGCTCATCGGTCATACACTTCAAGGGCGATGTAGTCCTCACTTGATTAGCAGGTACCCCATCAAAGTACTTCTTTTTGAGCCTATACCTCATATGGCGTGTTCCACACCTTAGGATGTCTTCCATTGCAGCTATTACAGGATCGCTGTGGATATCAATGGAGAATTTTCCCTACTCATCAAATAGCATAACATTAAGCTTCAACAAAAGTAGAAAGTAGAAAGGAACTACAATAATTATATGTAATGTTCGATATGGCTAATGTATTATTTCTTAAAGGTGCACCTAGTTGCACCTTGGGCATCTAGTTTTATTTAAATGTGCATCTATTTTTACTTATATAATGCTGGCAGCACATACAGTAGCATTGATTCAATTAGTGGAACAGAGCCTTACCTTCAGTTTGCCCTTTAAGTTATCAAGTTGACTACTATCATTCTTGTAGTCTGTCCAACTTGGATATATTGGTATATGCTGCCTGATTATGATCCCACTCTCTGAGGCCAGCTTTGCAGTTTGCATAGGAGCCTCTGGCCTTTTTTTCCCTTCCTTGACAATGATTGGTATCATGGTCCCTAAACCTTTGCTTATGGAATCAATCTCTTTGCCCATGCTCTTCCCCCTTGTCTCCACTTGTATACTGCTAGTGAGGGTGCCTAACATAAAACATTTACAAGTGTCAATAAAAAGATCCTGCACTTGATATGAATGAAGCATAGCACATATAAGGACAAAAGAACAAGAATCCAAGTTACTTGCCTTGTTGAGTAGTGCTCAATCCCATTGGCTCTAGTTCTGTACTTAAAGTGAGGTTGCCTAACAAAATACATTATTAAACATATGTTAATAAGAAGATCCCTTCACTTAATATGAGTGCAGCATACCACACATATTGACAATAAAATAACAGTAGGGTAGCCACTTGCCTTGTCCAGTATTGTTGGTGTCACCCTGATTCTGGTTTGCAGACAAATCAGGTTCGAGTCCAACCTCTGTGGCTTCAATCAGGCTAGTGGTGGACACTTGTTTCATAGCCCTTTGCCTAGTGCATCTCATTGTTTCTTCTAGATTTTCAAGTGCTAGCACTCTCTTAGATGCTCTTCCTGTTCCAGTTGTGACACAATCACCAGTGATGGCCACATCTTCCCCTAGTAACAAAGCCTCACAAAGCAAACAAAGACATGTACAAATAAGTTGCAGAAACAAAGTCATGAAAAACTTCCTTAAATATCCACTGCGAATAAATATGTCACAGAATATCAATATAAATGTAAAATTCAGAATGCAAACTCAACATATCTAAGACCTAATCTTACGTCTTTGACAATAGTTTCCAAAAAAATTGCCTAACTATGCCGGAGTCCATATAAGGCAGGGGCTAACTAACAATATATTTGTACCAACTGTACACGTAAGGGATAGAGTACTCTCCCGACAGATTAATCATATTTTTCATACTCTATGACCAACCATTAAGTTTGGATTCAGTGCTATGAACCAGCTATTGGCACTTAAGCAATACTGCAATTGTTCAACATGTTTAACCAAGTAGATCAAAGAATTCATATGCAAAATATAAGTGGCATCTAAACTACATCATACATGTATTGAATCTCACTAAACACGCATAGCTCAGTCAATTAGAGATATTGATTAGTAGAAGAGTTTAGTACTAGAGTTGGTACCTTTGACTTTTTGCCAACAGCTTTCTTCTTTGCAACTGAACTCTGGAATATTTGTGCTAGTTTACGGATACCCAGCTGATTAGCAAATCGATTGTTCCTCATGATATTCCAAGCCCTCGACGTGCTTAAGTCCATGTCTTCCTCTTCTGCACATACATTGCAATTATATTTAGTGGGTATGAAATTAGTTAGAAACCTATAGTCCCCCTACACCACCAGATTGACAATTTGGAAAATTTTAAATCGAGAAACCGAAAATCACCCCACGCACAGACTCATCTCCCAGCGCCCACCTCCCAATCCAGGGCCGCCCAATCCAAGCCTCGAAACCCTAAGGAGGATGAGCTGAGAAGTACCTAGCATCTCCATGGCGGCCGCTTCATCTGGAAGGACCGAAGGATGGCGGGAATGTGTGCTGTTGCCACCAAGCACCATTGTCTTGCTCCTAGGAGGGAGGCAAGGGGTTGCCGCAGGATCTGGAAGGACAGAAGGAGGGTGGGGAGGCTTGTTCTTGCCGCCGAGCATCTTCCTCCCAGGCGCCATCGTCTTGCTCCTGGGAGGGAAGCAAAGGGGTGGCCGGTTTGGAAGCCGAGCAAGATCTGCAAGAAGGTTGTTCTTGCCCGGCGGCTGTGCAGATGGAGGGAGT
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| CDS seq | ATGGCGCCTGGGAGGAAGATGCTCGGCGGCAAGAACAAGCCTCCCCACCCTCCTTCTGTCCTTCCAGATCCTGCGGCAACCCCTTGCCTCCCTCCTAGGAGCAAGACAATGGTGCTTGGTGGCAACAGCACACATTCCCGCCATCCTTCGGTCCTTCCAGATGAAGCGGCCGCCATGGAGATGCTAGAAGAGGAAGACATGGACTTAAGCACGTCGAGGGCTTGGAATATCATGAGGAACAATCGATTTGCTAATCAGCTGGGTATCCGTAAACTAGCACAAATATTCCAGAGTTCAGTTGCAAAGAAGAAAGCTGTTGGCAAAAAGTCAAAGGCTTTGTTACTAGGGGAAGATGTGGCCATCACTGGTGATTGTGTCACAACTGGAACAGGAAGAGCATCTAAGAGAGTGCTAGCACTTGAAAATCTAGAAGAAACAATGAGATGCACTAGGCAAAGGGCTATGAAACAAGTGTCCACCACTAGCCTGATTGAAGCCACAGAGGTTGGACTCGAACCTGATTTGTCTGCAAACCAGAATCAGGGTGACACCAACAATACTGGACAAGGCAACCTCACTTTAAGTACAGAACTAGAGCCAATGGGATTGAGCACTACTCAACAAGGCACCCTCACTAGCAGTATACAAGTGGAGACAAGGGGGAAGAGCATGGGCAAAGAGATTGATTCCATAAGCAAAGGTTTAGGGACCATGATACCAATCATTGTCAAGGAAGGGAAAAAAAGGCCAGAGGCTCCTATGCAAACTGCAAAGCTGGCCTCAGAGAGTGGGATCATAATCAGGCAGCATATACCAATATATCCAAGTTGGACAGACTACAAGAATGATAGTAGTCAACTTGATAACTTAAAGGGCAAACTGAAGGGAAAATTCTCCATTGATATCCACAGCGATCCTGTAATAGCTGCAATGGAAGACATCCTAAGGTGTGGAACACGCCATATGAGGTATAGGCTCAAAAAGAAGTACTTTGATGGGGTACCTGCTAATCAAGTGAGGACTACATCGCCCTTGAAGTGTATGACCGATGAGCAATGGACAAAATTGGTAGATATGTGGTCAAGCCCAGAGCACAAGGACAAATGTGCCAAAACCAACTGA
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| Protein seq | MAPGRKMLGGKNKPPHPPSVLPDPAATPCLPPRSKTMVLGGNSTHSRHPSVLPDEAAAMEMLEEEDMDLSTSRAWNIMRNNRFANQLGIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTTGTGRASKRVLALENLEETMRCTRQRAMKQVSTTSLIEATEVGLEPDLSANQNQGDTNNTGQGNLTLSTELEPMGLSTTQQGTLTSSIQVETRGKSMGKEIDSISKGLGTMIPIIVKEGKKRPEAPMQTAKLASESGIIIRQHIPIYPSWTDYKNDSSQLDNLKGKLKGKFSIDIHSDPVIAAMEDILRCGTRHMRYRLKKKYFDGVPANQVRTTSPLKCMTDEQWTKLVDMWSSPEHKDKCAKTN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0241300 | OsNip_02t0241300-01 | Chr02 | 7991943 | 7996772 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGCCTGGGAGGAAGATGCTCGGCGGCAAGAACAAGCCTCCCCACCCTCCTTCTGTCCTTCCAGATCCTGCGGCAACCCCTTGCCTCCCTCCTAGGAGCAAGACAATGGTGCTTGGTGGCAACAGCACACATTCCCGCCATCCTTCGGTCCTTCCAGATGAAGCGGCCGCCATGGAGATGCTAGAAGAGGAAGACATGGACTTAAGCACGTCGAGGGCTTGGAATATCATGAGGAACAATCGATTTGCTAATCAGCTGGGTATCCGTAAACTAGCACAAATATTCCAGAGTTCAGTTGCAAAGAAGAAAGCTGTTGGCAAAAAGTCAAAGGCTTTGTTACTAGGGGAAGATGTGGCCATCACTGGTGATTGTGTCACAACTGGAACAGGAAGAGCATCTAAGAGAGTGCTAGCACTTGAAAATCTAGAAGAAACAATGAGATGCACTAGGCAAAGGGCTATGAAACAAGTGTCCACCACTAGCCTGATTGAAGCCACAGAGGTTGGACTCGAACCTGATTTGTCTGCAAACCAGAATCAGGGTGACACCAACAATACTGGACAAGGCAACCTCACTTTAAGTACAGAACTAGAGCCAATGGGATTGAGCACTACTCAACAAGGCACCCTCACTAGCAGTATACAAGTGGAGACAAGGGGGAAGAGCATGGGCAAAGAGATTGATTCCATAAGCAAAGGTTTAGGGACCATGATACCAATCATTGTCAAGGAAGGGAAAAAAAGGCCAGAGGCTCCTATGCAAACTGCAAAGCTGGCCTCAGAGAGTGGGATCATAATCAGGCAGCATATACCAATATATCCAAGTTGGACAGACTACAAGAATGATAGTAGTCAACTTGATAACTTAAAGGGCAAACTGAAGGGAAAATTCTCCATTGATATCCACAGCGATCCTGTAATAGCTGCAATGGAAGACATCCTAAGGTGTGGAACACGCCATATGAGGTATAGGCTCAAAAAGAAGTACTTTGATGGGGTACCTGCTAATCAAGTGAGGACTACATCGCCCTTGAAGTGTATGACCGATGAGCAATGGACAAAATTGGTAGATATGTGGTCAAGCCCAGAGCACAAGGACAAATGTGCCAAAACCAACTGA
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| Protein seq | MAPGRKMLGGKNKPPHPPSVLPDPAATPCLPPRSKTMVLGGNSTHSRHPSVLPDEAAAMEMLEEEDMDLSTSRAWNIMRNNRFANQLGIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTTGTGRASKRVLALENLEETMRCTRQRAMKQVSTTSLIEATEVGLEPDLSANQNQGDTNNTGQGNLTLSTELEPMGLSTTQQGTLTSSIQVETRGKSMGKEIDSISKGLGTMIPIIVKEGKKRPEAPMQTAKLASESGIIIRQHIPIYPSWTDYKNDSSQLDNLKGKLKGKFSIDIHSDPVIAAMEDILRCGTRHMRYRLKKKYFDGVPANQVRTTSPLKCMTDEQWTKLVDMWSSPEHKDKCAKTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.389591 | 2.304563 | 3.406482 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g14500 | RBH | 1.590698 | 1.613171 | 0.892260 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0241300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010310 | RBH | 1.059936 | 4.454241 | 6.904360 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010380 | RBH | 0.155058 | 1.298015 | 2.883022 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010260 | RBH | 1.986840 | 7.821269 | 9.287423 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010200 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0132600 | RBH | 0 | 0 | 0.0123455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0140300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010450 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010350 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010140 | RBH | 0.0 | 0.0 | 0.0 |
