Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0234500 | OGI:02022250 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:7621905-7627260 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTCCACTCTCCAACTTCTCCCGCAGCATCGCCGCCGTCGTCGTCGCCGCCGCCGCCGCGAGGTGAGGGCTCGTAGCACCGTCCGGGAGGGCGGAGGAGGAGGAGAGATGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGGTGAGTACGCACGCCCTACCCCGTCTTCGCCTTGCCGGCCCGCCGCCGCCGTCCTCTCCATCGACGGCGGCGTGAAATTCCTGCAGGAATCCGATGCGTTCCCCTTCCGCTAGTTCATTTCAGCCGCCATCATTGGTCTTAGCGGACTTAGGGCAAGATCAATCCCGCCGCGAACAAACCCGCGCGCTTCCGATTTTTCTCACAAATTCTTCGGTTCGATGTGCTCGTGGAATCGAATCGTCGGCGCGAATTCGCTAGTTCGTTGGGATTCCGAAAGGGAGGGAATGTTCCGAAGAGAATCGATTTTATAATATGTCTGGATTTATCTTTCACCAAGGTCCCATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATCTCGGTGGGACCTATTTTTTCTCCATTTTTTTTCTGACTCGCTGATCCTTGCTAGGATGTGGCTACATCCAAAACACCATTTGCTGAGTCGAGGCGTCGAGCTGAATCCATTTGCTGAGTCGAGCTGAATTTATATATGCTCCATGAAATCTTTGCTACGAATTTATGCTTTGTTTTCATTTCAAGGATGTTGCTGCATCAAAACACCATTTGCTTAGTTGAGCTAAATTTATAAATCCCCATGAAATCTTTGCAACGAATTTATGCTTTGTTTTCATTTTTTATTTTAAACTTTCAGGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTCCTCGGTTCAAGGCAGTTTTCTCCGATCATATACAGCCCAGCACGCCGCGCGTCGTCACGGCTGTCTCGGAGAGAGGTGATAGCTTTTGCAGGCCAGCAATCTTGGGATATCGGCAGATTTGTCAGGACGCTGTATTTCTTCAACGGGCCACCGAATCCTCTCAAGGTTTACTCACTGTATTGGGATTTTTTTTCACCTCTTCTCGTTACAGTTATTTCACATTTGGCATTGTGCTCATGTTTTGTCTGTTCAATCTGTAGATTGTAGAGTCCATTCTTAGCAGTTTCACTGGCTCTGCTCCTGGTGAGGTGCCAAAGAAAATGGAATCTTCTGATGTGGTGCTGGTCACTGGAGCTACCGGTGGCGTTGGACGAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGGTACAATACTTGTCAAGCTTATCTACTTTTGGCTTCTCTGTTTTCATTCATTATTACATGGATAGTCCAACTTCTCCCTCTTTTGTTGGATCTTTGCTGCTCTTAATGTTGATCTAACATTTCAAATTTCAATTCAGGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTGGTAAGCCACTTGTTTAGCTGGATTTAGATTCATGTTCCATGTGCGGTTTAGTTTCAACCAACTAGGTCTATTTCAATACCCCATGTATTCCAATATGCATTACCCTTACCCAATACCCAATGTATTCCAGCAATATGATTGCCTGAGGTAAGTCTCACTGTTACATTTCTGCTAACCTTCTAGTTGTGAATGAAATGAAACTAGGGAATTTTGTTCTTAAATGATAGTGAAAATTTCTGTGTATTTTTTATGACATTTTGTTTGAAGTGACCACGTATATGCAATGATTCACTACATATAATGAACCTTCCTATCTCATTGCTAGTTTGCATATGGTTTATGTGGTTATTGAATCTTCCACACCTGTAAAGACGGAAGTATTGAATATTTATATTATTAAAATTTCTATTTTGTGTCAGATCATAGGAGATGTCACAAAGGAAAATTCACTTGATCCCAAGTACTTCAAAGGGATTAAGAAAGTGGTAAATGCAGTGTCAGTTATAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAGGTACGCCAAATGCCCTATCATATGTTACCAATATTTCACGTACTCTACTTTACACCCTACAAACTTACATTTAATCTCATCTTCATGCAGGGCATCAAGTTTTTTGAACCTGAGGTAGCTGCATCAATACATTCCTTCTCTTGTAGAATATAAGTAACAATGGATGACTGACATCCTCATTCCCAACATACAACATGGAAATATTGCATCAGTTTGCACTTTTGCTCGTTCAAAAGCTAGTTCATTATATTATTTTGTTATGCCTATCAGATCAAGGGACCTTCACCTGAAATGGTAGAATACCTTGGAATGCAAAACTTGATTAATGCTGTCAAGAACAGTGTGGGTCTGACTGAAGGGAAACTGCTTTTTGGGGGCACAGGTAAATCTTTCATTCCATACCAAAATGTTTTTTGAAAGAAATATCGGAGATTTAAATCTACACTCAACTCAACTCATATTCATTAGGGGACCTCCATAGTACCCAAAAACTTTGGTGCAAGATCTGCGGGAAATCCAGTTTTTAGTAATTATGGTGATCATAACAGTGATTTTTTTCAAAACAACAAAATAGTGAATTGCTTGCAACTGAATCATGTATAAATTTATTTTTCCATCCCTACATGTGTATACATTTGTATGTTAGTTGTCTTTCAATATATAAGTTTTTTTTCCTTATCACAACATGTTAGTTATTTTATTTAGGCAACTTATCCGGAAAGATTGTTTGGGGAGCACTTGATGATGTTGTGATGGGAGGTGTTAGTGAAAGCACATTCCAAATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAGGTATTTTGTTTTTTTTTAATGATCCCTCGACTCCTTGTATATGCGATGTGGCAATTCTTTGGAAAACCTCTAGTCTAAGCAGGTCTGTGCAATGTATTCTAGGTACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGACAAAGGTACCTACTGACATGTATTTTCCCAAAAAAAAAAAAAACAAAGTTGCTGCCGTTTTGTGTGTTGATTTATATTTTATTTCCATGTCCTAACTATTAGGAATAATTAATTATTTGTCACTCTTACAGATGGTGATAAATAATTTGCCACTGGACCCACATGTCATAGACAAATGAGGACCCACATGTCATAAACAGCGAGTGGCAAATAATTAATTGCCACATCTTAAAAGTGGTACAAAGTTAAATGTCCCTAACTATTATTGTGATATGTTACTCTGATTGCAGAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTGAATGGGATACTGTCGGCTACATTGCAAGCTTTGACACGACTAAGGGGGAATGGCAAAGTGTATGTTGTATTTGTTGATTTATTGAAAAAAATACGTCCCTTTGTTTCAGCAACTTACAGCTATGCTTCTTATTGATGGAACAGGTTAAATTACCTTTCTCTTCACTGAATCCTGTATTCCGTGCCCGCACTATGCCTGATGCTGCACCCTTTGATGCAAGCAATGTTACTTCCTTACAGGTACAATGTGTTCATGTGTTGGTATAATTTTTTAGGAATAACTGAACCTGAAATTGCTGTGATAATTCTGTAGCTCATGTTTAGCAAGTTTGAGTATGACGGAAAGCTGAACCCAACATTTACAGAAGGTTCATTTGAGCTCCCCTTTTCAAGTATTAGAGCATACATAAACGAGCCAATCACTCCAAGGTTTGTTCTTTGTACTAGTTTTACTATATGACATCATCAGAATAAATGAGCACTGTAATCGTCCGATTGTTTGGAAGTCATCAAGACTCACTAGAATAAATGACAATTCTACTTGCAGGTTTGTCCATGTTAGTTCTGCAGGAGTTACAAGACCTGAGAGACCAGGCCTGGATTTAAGTAAACAACCTCCTGCTGTTCGCATGAACAAAGAGCTGGGCTCCATTCTAACTTACAAGTTGAAGGTATGCGCCATTTTTCCTTTATTATTGTGCATTTGTGCTTATTGATTCACATCATGTCTAAATGCTTATCGCATGTCCTTTCAGGGTGAGGATTTAATCCGGGAAAGTGGCATTCCATATACTATTGTGCGGCCATGTGCTCTAACAGAGGAACCAGCTGGAGCTGACCTCATATTTGACCAGGGAGATAATATCACAGTATGTAGAGGCAGCATTTGTTTGTTGCCTTCATAAGATGCCACGCCATTCTTCTTCCTCCATAAGATCAAATAAAGCATCAGTTTCATATAAGTTTCCTGTATTTTTTTTTTCAGGGAAAGATATCAAGGGAAGAAATTGCTTTCATTTGTGTTGCAGCTCTGGCAAGTCCAAATGCAGTAGAGAAAACCTTTGAGGTTAAAATTCTGCAACTCATTTGCAAGACACTACTTGGGACAACAAAACTTCAGAAGGAAATTGTGGCATTTTATTTCATTTTAAGCTAACTCATGTACTTTTTTTTGTTAGGTCAAGAGCACTGTTCCATTCAGTGAACCTTTCGTGGTTGATCCTTCAAATCCTCCTCCAGAGAAAGACTATGATGTGTATTTCAAAGAGCTCAAAGCTGGCATAACAGGTAAAGAGGCACTAGAAGGAACACCTGCTCAGGTCTGAAGAACATGTTAAATGCAGAACGCCCAACTGCTTTGACAAATCTTGACATGGTAATTCTCCATTGTATTTAGGTCTTAACCACTTAAGATATATGAGATTATAACGCTGAATTTCATAAATTAACTTCATGATAGGTGCTTCTTGAACATGAACAGAATTACATAAATATGCAAGTCTGATTCATAAACCACCAATAGTTGCAGTACCTGAGCATATGTGCCACACTTAATCTTTGCAGTCATGTGGTTTCCAAAATACCAAATGGGAAGTACTTTGTGAAGTATGTGAAGGAACAGTTGTTTCTTTTTTTTATGTAAAGTAGTATATCCTCTGGAGTTTGTGTTATATTTAATCTGCTGTATCTGTATGAGAAGATATGCATACATCTTCAGAAGACATATGGATGTCGATCAAGAGCTCAAAGGTTATGGAGCATTGGAGCTCTTTCTGTAGCAGATTCTGTATATTATGTTGCTTTTATTTTCACTGAATTGTGTGCTGTAGATAGCGTCATTGGAATCTAGATCGACCATTTTGTAAAATCAAATACATTGTCATACAGAGAGAAGAGAAGTTTACAGTTCCAGTTTTTTTTTTC
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| CDS seq | ATGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTCCTCGGTTCAAGGCAGTTTTCTCCGATCATATACAGCCCAGCACGCCGCGCGTCGTCACGGCTGTCTCGGAGAGAGGTGATAGCTTTTGCAGGCCAGCAATCTTGGGATATCGGCAGATTTGTCAGGACGCTGTATTTCTTCAACGGGCCACCGAATCCTCTCAAGATTGTAGAGTCCATTCTTAGCAGTTTCACTGGCTCTGCTCCTGGTGAGGTGCCAAAGAAAATGGAATCTTCTGATGTGGTGCTGGTCACTGGAGCTACCGGTGGCGTTGGACGAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTGATCATAGGAGATGTCACAAAGGAAAATTCACTTGATCCCAAGTACTTCAAAGGGATTAAGAAAGTGGTAAATGCAGTGTCAGTTATAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAGGGCATCAAGTTTTTTGAACCTGAGATCAAGGGACCTTCACCTGAAATGGTAGAATACCTTGGAATGCAAAACTTGATTAATGCTGTCAAGAACAGTGTGGGTCTGACTGAAGGGAAACTGCTTTTTGGGGGCACAGGCAACTTATCCGGAAAGATTGTTTGGGGAGCACTTGATGATGTTGTGATGGGAGGTGTTAGTGAAAGCACATTCCAAATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAGGTACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGACAAAGAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTGAATGGGATACTGTCGGCTACATTGCAAGCTTTGACACGACTAAGGGGGAATGGCAAAGTGTTAAATTACCTTTCTCTTCACTGAATCCTGTATTCCGTGCCCGCACTATGCCTGATGCTGCACCCTTTGATGCAAGCAATGTTACTTCCTTACAGCTCATGTTTAGCAAGTTTGAGTATGACGGAAAGCTGAACCCAACATTTACAGAAGGTTCATTTGAGCTCCCCTTTTCAAGTATTAGAGCATACATAAACGAGCCAATCACTCCAAGGTTTGTCCATGTTAGTTCTGCAGGAGTTACAAGACCTGAGAGACCAGGCCTGGATTTAAGTAAACAACCTCCTGCTGTTCGCATGAACAAAGAGCTGGGCTCCATTCTAACTTACAAGTTGAAGGGTGAGGATTTAATCCGGGAAAGTGGCATTCCATATACTATTGTGCGGCCATGTGCTCTAACAGAGGAACCAGCTGGAGCTGACCTCATATTTGACCAGGGAGATAATATCACAGGAAAGATATCAAGGGAAGAAATTGCTTTCATTTGTGTTGCAGCTCTGGCAAGTCCAAATGCAGTAGAGAAAACCTTTGAGGTCAAGAGCACTGTTCCATTCAGTGAACCTTTCGTGGTTGATCCTTCAAATCCTCCTCCAGAGAAAGACTATGATGTGTATTTCAAAGAGCTCAAAGCTGGCATAACAGGTAAAGAGGCACTAGAAGGAACACCTGCTCAGGTCTGA
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| Protein seq | MSCCAASSSSPVLANPRGGFAASCSTRRNHRVIFLGSRQFSPIIYSPARRASSRLSRREVIAFAGQQSWDIGRFVRTLYFFNGPPNPLKIVESILSSFTGSAPGEVPKKMESSDVVLVTGATGGVGRRVVDILRNKGIPVRVLARNEEKARSMLGPDVDLIIGDVTKENSLDPKYFKGIKKVVNAVSVIVGPKEGDTPDRQKYKQGIKFFEPEIKGPSPEMVEYLGMQNLINAVKNSVGLTEGKLLFGGTGNLSGKIVWGALDDVVMGGVSESTFQIQPTGSETDGPTGLFKGTVSTSNNGGFTSIRTKNFTVPEDLSAYDGIELRVKGDGRRYKLIVRTSFEWDTVGYIASFDTTKGEWQSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFSKFEYDGKLNPTFTEGSFELPFSSIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEIAFICVAALASPNAVEKTFEVKSTVPFSEPFVVDPSNPPPEKDYDVYFKELKAGITGKEALEGTPAQV |
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| Function | Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic [UniProtKB/Swiss-Prot:Q8W4D6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0234500 | OsNip_02t0234500-01 | Chr02 | 7621905 | 7627258 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGCTGCTGCGCCGCCTCGTCTTCCTCTCCGGTTCTCGCCAACCCCCGGGGGGGATTCGCTGCTAGCTGCTCAACAAGAAGGAACCACAGGGTGATCTTCCTCGGTTCAAGGCAGTTTTCTCCGATCATATACAGCCCAGCACGCCGCGCGTCGTCACGGCTGTCTCGGAGAGAGGTGATAGCTTTTGCAGGCCAGCAATCTTGGGATATCGGCAGATTTGTCAGGACGCTGTATTTCTTCAACGGGCCACCGAATCCTCTCAAGATTGTAGAGTCCATTCTTAGCAGTTTCACTGGCTCTGCTCCTGGTGAGGTGCCAAAGAAAATGGAATCTTCTGATGTGGTGCTGGTCACTGGAGCTACCGGTGGCGTTGGACGAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTGATCATAGGAGATGTCACAAAGGAAAATTCACTTGATCCCAAGTACTTCAAAGGGATTAAGAAAGTGGTAAATGCAGTGTCAGTTATAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAGGGCATCAAGTTTTTTGAACCTGAGATCAAGGGACCTTCACCTGAAATGGTAGAATACCTTGGAATGCAAAACTTGATTAATGCTGTCAAGAACAGTGTGGGTCTGACTGAAGGGAAACTGCTTTTTGGGGGCACAGGCAACTTATCCGGAAAGATTGTTTGGGGAGCACTTGATGATGTTGTGATGGGAGGTGTTAGTGAAAGCACATTCCAAATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAGGTACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGACAAAGAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTGAATGGGATACTGTCGGCTACATTGCAAGCTTTGACACGACTAAGGGGGAATGGCAAAGTGTTAAATTACCTTTCTCTTCACTGAATCCTGTATTCCGTGCCCGCACTATGCCTGATGCTGCACCCTTTGATGCAAGCAATGTTACTTCCTTACAGCTCATGTTTAGCAAGTTTGAGTATGACGGAAAGCTGAACCCAACATTTACAGAAGGTTCATTTGAGCTCCCCTTTTCAAGTATTAGAGCATACATAAACGAGCCAATCACTCCAAGGTTTGTCCATGTTAGTTCTGCAGGAGTTACAAGACCTGAGAGACCAGGCCTGGATTTAAGTAAACAACCTCCTGCTGTTCGCATGAACAAAGAGCTGGGCTCCATTCTAACTTACAAGTTGAAGGGTGAGGATTTAATCCGGGAAAGTGGCATTCCATATACTATTGTGCGGCCATGTGCTCTAACAGAGGAACCAGCTGGAGCTGACCTCATATTTGACCAGGGAGATAATATCACAGGAAAGATATCAAGGGAAGAAATTGCTTTCATTTGTGTTGCAGCTCTGGCAAGTCCAAATGCAGTAGAGAAAACCTTTGAGGTCAAGAGCACTGTTCCATTCAGTGAACCTTTCGTGGTTGATCCTTCAAATCCTCCTCCAGAGAAAGACTATGATGTGTATTTCAAAGAGCTCAAAGCTGGCATAACAGGTAAAGAGGCACTAGAAGGAACACCTGCTCAGGTCTGA
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| Protein seq | MSCCAASSSSPVLANPRGGFAASCSTRRNHRVIFLGSRQFSPIIYSPARRASSRLSRREVIAFAGQQSWDIGRFVRTLYFFNGPPNPLKIVESILSSFTGSAPGEVPKKMESSDVVLVTGATGGVGRRVVDILRNKGIPVRVLARNEEKARSMLGPDVDLIIGDVTKENSLDPKYFKGIKKVVNAVSVIVGPKEGDTPDRQKYKQGIKFFEPEIKGPSPEMVEYLGMQNLINAVKNSVGLTEGKLLFGGTGNLSGKIVWGALDDVVMGGVSESTFQIQPTGSETDGPTGLFKGTVSTSNNGGFTSIRTKNFTVPEDLSAYDGIELRVKGDGRRYKLIVRTSFEWDTVGYIASFDTTKGEWQSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFSKFEYDGKLNPTFTEGSFELPFSSIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEIAFICVAALASPNAVEKTFEVKSTVPFSEPFVVDPSNPPPEKDYDVYFKELKAGITGKEALEGTPAQV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0234500 | OsNip_02t0234500-02 | Chr02 | 7623044 | 7627260 | + | RAP2018-11-26 | ||
| CDS seq | ATTGTAGAGTCCATTCTTAGCAGTTTCACTGGCTCTGCTCCTGGTGAGGTGCCAAAGAAAATGGAATCTTCTGATGTGGTGCTGGTCACTGGAGCTACCGGTGGCGTTGGACGAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTGATCATAGGAGATGTCACAAAGGAAAATTCACTTGATCCCAAGTACTTCAAAGGGATTAAGAAAGTGGTAAATGCAGTGTCAGTTATAGTTGGGCCAAAGGAAGGCGATACACCAGACAGGCAGAAGTATAAACAGGGCATCAAGTTTTTTGAACCTGAGGTAGCTGCATCAATACATTCCTTCTCTTGTAGAATATAA
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| Protein seq | IVESILSSFTGSAPGEVPKKMESSDVVLVTGATGGVGRRVVDILRNKGIPVRVLARNEEKARSMLGPDVDLIIGDVTKENSLDPKYFKGIKKVVNAVSVIVGPKEGDTPDRQKYKQGIKFFEPEVAASIHSFSCRI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0234500 | OsNip_02t0234500-03 | Chr02 | 7624302 | 7627247 | + | RAP2018-11-26 | ||
| CDS seq | AAGAACAGTGTGGGTCTGACTGAAGGGAAACTGCTTTTTGGGGGCACAGGCAACTTATCCGGAAAGATTGTTTGGGGAGCACTTGATGATGTTGTGATGGGAGGTGTTAGTGAAAGCACATTCCAAATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAGGTACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGACAAAGAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTGAATGGGATACTGTCGGCTACATTGCAAGCTTTGACACGACTAAGGGGGAATGGCAAAGTGTTAAATTACCTTTCTCTTCACTGAATCCTGTATTCCGTGCCCGCACTATGCCTGATGCTGCACCCTTTGATGCAAGCAATGTTACTTCCTTACAGCTCATGTTTAGCAAGTTTGAGTATGACGGAAAGCTGAACCCAACATTTACAGAAGGTTCATTTGAGCTCCCCTTTTCAAGTATTAGAGCATACATAAACGAGCCAATCACTCCAAGGTTTGTCCATGTTAGTTCTGCAGGAGTTACAAGACCTGAGAGACCAGGCCTGGATTTAAGTAAACAACCTCCTGCTGTTCGCATGAACAAAGAGCTGGGCTCCATTCTAACTTACAAGTTGAAGGGTGAGGATTTAATCCGGGAAAGTGGCATTCCATATACTATTGTGCGGCCATGTGCTCTAACAGAGGAACCAGCTGGAGCTGACCTCATATTTGACCAGGGAGATAATATCACAGGAAAGATATCAAGGGAAGAAATTGCTTTCATTTGTGTTGCAGCTCTGGCAAGTCCAAATGCAGTAGAGAAAACCTTTGAGGTCAAGAGCACTGTTCCATTCAGTGAACCTTTCGTGGTTGATCCTTCAAATCCTCCTCCAGAGAAAGACTATGATGTGTATTTCAAAGAGCTCAAAGCTGGCATAACAGGTAAAGAGGCACTAGAAGGAACACCTGCTCAGGTCTGA
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| Protein seq | KNSVGLTEGKLLFGGTGNLSGKIVWGALDDVVMGGVSESTFQIQPTGSETDGPTGLFKGTVSTSNNGGFTSIRTKNFTVPEDLSAYDGIELRVKGDGRRYKLIVRTSFEWDTVGYIASFDTTKGEWQSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFSKFEYDGKLNPTFTEGSFELPFSSIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEIAFICVAALASPNAVEKTFEVKSTVPFSEPFVVDPSNPPPEKDYDVYFKELKAGITGKEALEGTPAQV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0234500 | OsNip_02t0234500-04 | Chr02 | 7621905 | 7627259 | + | IsoSeq | ||
| CDS seq | ATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTGAATGGGATACTGTCGGCTACATTGCAAGCTTTGACACGACTAAGGGGGAATGGCAAAGTGTTAAATTACCTTTCTCTT |
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| Protein seq | MTVLNYVLRVTGGGINLLCALALNGILSATLQALTRLRGNGKVLNYLSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 7626712 | 7626901 | + | OsNip_02t0234500-04,OsNip_02t0234500-02,OsNip_02t0234500-03 | OsNip_02t0234500-03,OsNip_02t0234500-02,OsNip_02t0234500-04,OsNip_02t0234500-01 | All |
| RI | Chr02 | 7624061 | 7624352 | + | OsNip_02t0234500-02 | OsNip_02t0234500-02,OsNip_02t0234500-04,OsNip_02t0234500-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.175946 | 11.534314 | 7.274728 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13970 | RBH | 8.222929 | 7.811331 | 1.837255 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0234500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010040 | RBH | 2.733216 | 3.255290 | 1.582650 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010120 | RBH | 2.369297 | 0.440653 | 5.162599 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009990 | RBH | 8.654712 | 0.000000 | 14.938733 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009820 | RBH | 1.043538 | 0.077956 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009950 | RBH | 47.913151 | 0.000000 | 19.831913 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009720 | RBH | 2.413263 | 0.0 | 2.349754 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0130500 | RBH | 39.0300865 | 8.035832 | 2.6665015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010220 | RBH | 2.129572 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009880 | RBH | 4.377474 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010180 | RBH | 44.737030 | 2.750398 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010200 | RBH | 5.503901 | 0.104130 | 1.766345 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009890 | RBH | 5.469837 | 0.620043 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010100 | RBH | 3.691530 | 0.937722 | 2.170421 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009910 | RBH | 9.034949 | 10.629937 | 13.759494 |
