Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0231600 | OGI:09005370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:7431357-7433852 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGTTTCCTCGCCGTTGCCGTCGCCGTCGCCGTCGCCGCTGCCGCTTCCGCTTGCGTGCCCTCGTCGCCGTCGAATCGCTCGCCCGTCGGTCGGGTCCGGTGACCTCGCTGCCTCCGAGATCCTCCTCTCCTCGCCTGCGCGCTCTTCCCGTCGGCTAGAAGGGCTGCTTCTTCCGTCCCGGCTCCGTCGCCATCCCCCCGCCGGCGGCGACTTGGGCGGCCTCGGCTACTTCGCCCTTGTTTTCCGGCCAAGTTGAAGGTTCCGGTTCCGTTTCCGATCCTCAGGTAAAAGAGCACATACTTCTCCAATCATTTGAATAGCTAACAGCAATCCATTGTGCATTTGTGCTTCATGCGGCTACGGATGTATCCATCAATTAGTTGAGAGATAGGATCGATTCACTGTGTGTTCTACTGATGTGTAAATGCCGCTATGTTCTGCATCATCTGTGCTGTGGGATTTGCTATTTCTGTTACTTTGATGCGGCCGCGGTAATGTATAGGAGTAGGAAGGATTTATTGGCATTTCACCAATCGTCCTTAGTTAGGTAGCTGATGCGACGCTGAAGTTGGCTGCACTGCCTCAACAGTATAACTGAGGGCCTTTCCTTGAATCATTCGTGTGACTTCTTTCACATTCCTCTGTTGTTTGGAGGAATACCAAGGGGGATGGGCTCATCTGTAGAGTATTTTTTAAAATATAGACAGTAGCATGTGTTCTGGATCATAAACTATGCGAAATTGCGAGCCAAAATTTTGATGCAAGGTTGCTTTGTTACAAATATGATCTGTATTTCCTTGATTTAAAATTAAGTTGTTGTGTAATTTGTTCAACTACAAAGAATGTAAAATCTTGGGACTCGGATTGTTGGCCTGTATTTCACGCATAAAACTACAAATATTGTTATGCTTTTGTTTAACTCCTCAGGGGTTTTGCAGCCAGCACTCGAATTTTCATCATTGTTTTAGGCATTTGATATTCTTATCAGTTCATCATTCTAAAATTAATCTACTCGGATTCTAATAGATTTTGAGAAAATGGATCCTGAAGATCTTACTGACTCTGAGGAAGATGAAGATGATGACATGATGTTTTTTATCTTGCCTACACTATATCTTGTTTCTACTGGAAGCGAAGAGCCATGTCATACATCGAAGTTCAGTGGTGCAGAGTGGATTTGTGAAGTGCTTGAAGATGACCGTGGTGAAGGCTATGCCAAATTTCGAATGGAGCCTCAAATTCTTCAGAAATTTTCAGACCTTCTTAGGTCAAAGAATCTTTTGCGGAATACAAGAGGCGTTTCTGTGGAAGAGCAAATTGGCATGTTTATTTATATGCTCTCTCGAAATGCCAGCTTTCAGAAAATGAGTGATAGATTTGAGCACAGTAGGGAGACTATCCATAGACATATCAAGGCATGCTTTGATGCAATCACCTCATTGACAGATGAGTTTGTCAAGCATCCTTCAACTGAGACTCATTGGAAAATATCATCTGATCCGCAATATGGGCCTTATTTTAAGGTAGGTTTAACCTGTCTCTTTGCATTGTATGAAGTTCTACACTTCTCTGCTACATCTGAATCAGTAGTGTGTTTCCTTGCAGAACTGTATAGGGGCAATCGATGGAGTTCATGTACCTATCACAATATCAGACTATGAAGCAGCTCCATATCGAAATATAGAAGATTCCCTTTCTCAAAATGTGATGCTGGCTTGTGACTTTGATTTGAATTTTGTCCATGTGTGCAGTGGCCACGAAGGGTCTGCATCCGACGCGGCAGTCCTATATGCTGCTGTGGAGTCTGGATTTGAAGTCCCAAGTAACAAGTATTATTTGGTTGATAGGGGTTATGCAAACACACCATCTTTTCTTGCTCCTTATAGAGAAGCTGCATACCATATTGAAGAGGAGGAGCAGAGCAATTGTCAGCCAAGTGACTACAAGGAGTTGTTCAACCTTCGTCACTCAAAGCTGCGCAACAACATAAAGCGTGCCACAGCGCTATTGAAGATGAGGTTCCCAATTTTAAATGTCGCAACATTCTATCAGATAGAAACTCAAGCGAAAATCCCAGCAGCAGCAGTGGTGCTGCACAATATAATGCAGGGCCAAAAAGATGATGATGATGATGATGGGTGGGCATTTAACCAGGCAATGCCAGTTTCATCCCGTAGAACTGTAGTTTTACCCAGTGGGGATGATGCTTATGGCAATGATGTCGAAGAACTGAACAACCAATGTAGCATGGGTGATGCTTTGAGAGATTATATTGCGAAGAAGATGTGGACAGATTATGAAAGGAACAGGAGGTAGGTTTCCCTATTCTGAGGCCAAACAACATATAGGTGAAAGGAAAGAGCTGCTCATGTGTGATTTGTATCTTGAATTCTGATGTTTATGGTTAAAGATGGAACTAGGCAATGCCCTGTAGAAGCTGTACTCAGTTGACACCCACCAGTAAGATATGGCATTTTCATGTCCTCCATTTGGCT
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| CDS seq | ATGGATCCTGAAGATCTTACTGACTCTGAGGAAGATGAAGATGATGACATGATGTTTTTTATCTTGCCTACACTATATCTTGTTTCTACTGGAAGCGAAGAGCCATGTCATACATCGAAGTTCAGTGGTGCAGAGTGGATTTGTGAAGTGCTTGAAGATGACCGTGGTGAAGGCTATGCCAAATTTCGAATGGAGCCTCAAATTCTTCAGAAATTTTCAGACCTTCTTAGGTCAAAGAATCTTTTGCGGAATACAAGAGGCGTTTCTGTGGAAGAGCAAATTGGCATGTTTATTTATATGCTCTCTCGAAATGCCAGCTTTCAGAAAATGAGTGATAGATTTGAGCACAGTAGGGAGACTATCCATAGACATATCAAGGCATGCTTTGATGCAATCACCTCATTGACAGATGAGTTTGTCAAGCATCCTTCAACTGAGACTCATTGGAAAATATCATCTGATCCGCAATATGGGCCTTATTTTAAGAACTGTATAGGGGCAATCGATGGAGTTCATGTACCTATCACAATATCAGACTATGAAGCAGCTCCATATCGAAATATAGAAGATTCCCTTTCTCAAAATGTGATGCTGGCTTGTGACTTTGATTTGAATTTTGTCCATGTGTGCAGTGGCCACGAAGGGTCTGCATCCGACGCGGCAGTCCTATATGCTGCTGTGGAGTCTGGATTTGAAGTCCCAAGTAACAAGTATTATTTGGTTGATAGGGGTTATGCAAACACACCATCTTTTCTTGCTCCTTATAGAGAAGCTGCATACCATATTGAAGAGGAGGAGCAGAGCAATTGTCAGCCAAGTGACTACAAGGAGTTGTTCAACCTTCGTCACTCAAAGCTGCGCAACAACATAAAGCGTGCCACAGCGCTATTGAAGATGAGGTTCCCAATTTTAAATGTCGCAACATTCTATCAGATAGAAACTCAAGCGAAAATCCCAGCAGCAGCAGTGGTGCTGCACAATATAATGCAGGGCCAAAAAGATGATGATGATGATGATGGGTGGGCATTTAACCAGGCAATGCCAGTTTCATCCCGTAGAACTGTAGTTTTACCCAGTGGGGATGATGCTTATGGCAATGATGTCGAAGAACTGAACAACCAATGTAGCATGGGTGATGCTTTGAGAGATTATATTGCGAAGAAGATGTGGACAGATTATGAAAGGAACAGGAGGTAG
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| Protein seq | MDPEDLTDSEEDEDDDMMFFILPTLYLVSTGSEEPCHTSKFSGAEWICEVLEDDRGEGYAKFRMEPQILQKFSDLLRSKNLLRNTRGVSVEEQIGMFIYMLSRNASFQKMSDRFEHSRETIHRHIKACFDAITSLTDEFVKHPSTETHWKISSDPQYGPYFKNCIGAIDGVHVPITISDYEAAPYRNIEDSLSQNVMLACDFDLNFVHVCSGHEGSASDAAVLYAAVESGFEVPSNKYYLVDRGYANTPSFLAPYREAAYHIEEEEQSNCQPSDYKELFNLRHSKLRNNIKRATALLKMRFPILNVATFYQIETQAKIPAAAVVLHNIMQGQKDDDDDDGWAFNQAMPVSSRRTVVLPSGDDAYGNDVEELNNQCSMGDALRDYIAKKMWTDYERNRR |
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| Function | Putative nuclease HARBI1 [UniProtKB/Swiss-Prot:B0BN95] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0231600 | OsNip_02t0231600-01 | Chr02 | 7431357 | 7433852 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATCCTGAAGATCTTACTGACTCTGAGGAAGATGAAGATGATGACATGATGTTTTTTATCTTGCCTACACTATATCTTGTTTCTACTGGAAGCGAAGAGCCATGTCATACATCGAAGTTCAGTGGTGCAGAGTGGATTTGTGAAGTGCTTGAAGATGACCGTGGTGAAGGCTATGCCAAATTTCGAATGGAGCCTCAAATTCTTCAGAAATTTTCAGACCTTCTTAGGTCAAAGAATCTTTTGCGGAATACAAGAGGCGTTTCTGTGGAAGAGCAAATTGGCATGTTTATTTATATGCTCTCTCGAAATGCCAGCTTTCAGAAAATGAGTGATAGATTTGAGCACAGTAGGGAGACTATCCATAGACATATCAAGGCATGCTTTGATGCAATCACCTCATTGACAGATGAGTTTGTCAAGCATCCTTCAACTGAGACTCATTGGAAAATATCATCTGATCCGCAATATGGGCCTTATTTTAAGAACTGTATAGGGGCAATCGATGGAGTTCATGTACCTATCACAATATCAGACTATGAAGCAGCTCCATATCGAAATATAGAAGATTCCCTTTCTCAAAATGTGATGCTGGCTTGTGACTTTGATTTGAATTTTGTCCATGTGTGCAGTGGCCACGAAGGGTCTGCATCCGACGCGGCAGTCCTATATGCTGCTGTGGAGTCTGGATTTGAAGTCCCAAGTAACAAGTATTATTTGGTTGATAGGGGTTATGCAAACACACCATCTTTTCTTGCTCCTTATAGAGAAGCTGCATACCATATTGAAGAGGAGGAGCAGAGCAATTGTCAGCCAAGTGACTACAAGGAGTTGTTCAACCTTCGTCACTCAAAGCTGCGCAACAACATAAAGCGTGCCACAGCGCTATTGAAGATGAGGTTCCCAATTTTAAATGTCGCAACATTCTATCAGATAGAAACTCAAGCGAAAATCCCAGCAGCAGCAGTGGTGCTGCACAATATAATGCAGGGCCAAAAAGATGATGATGATGATGATGGGTGGGCATTTAACCAGGCAATGCCAGTTTCATCCCGTAGAACTGTAGTTTTACCCAGTGGGGATGATGCTTATGGCAATGATGTCGAAGAACTGAACAACCAATGTAGCATGGGTGATGCTTTGAGAGATTATATTGCGAAGAAGATGTGGACAGATTATGAAAGGAACAGGAGGTAG
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| Protein seq | MDPEDLTDSEEDEDDDMMFFILPTLYLVSTGSEEPCHTSKFSGAEWICEVLEDDRGEGYAKFRMEPQILQKFSDLLRSKNLLRNTRGVSVEEQIGMFIYMLSRNASFQKMSDRFEHSRETIHRHIKACFDAITSLTDEFVKHPSTETHWKISSDPQYGPYFKNCIGAIDGVHVPITISDYEAAPYRNIEDSLSQNVMLACDFDLNFVHVCSGHEGSASDAAVLYAAVESGFEVPSNKYYLVDRGYANTPSFLAPYREAAYHIEEEEQSNCQPSDYKELFNLRHSKLRNNIKRATALLKMRFPILNVATFYQIETQAKIPAAAVVLHNIMQGQKDDDDDDGWAFNQAMPVSSRRTVVLPSGDDAYGNDVEELNNQCSMGDALRDYIAKKMWTDYERNRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.292038 | 0.149746 | 0.887762 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13770 | RBH | 0.191534 | 0.097679 | 0.221634 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0231600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006180 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0124400 | RBH | 1.9429785 | 5.184614 | 3.8196325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006160 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0127400 | RBH | 2.3429635 | 3.4966995 | 8.847309 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022890 | SBH | 0.158770 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0023080 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006390 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022580 | SBH | 0.158905 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023030 | SBH | 0.084022 | 0.0 | 0.190163 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0022880 | RBH | 0.0 | 0.0 | 0.0 |
