Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0225900 | OGI:02020950 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:7062837-7064444 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCTCCACCATCACATTCCACATCCCCCTCACCCCTCACCTCACCTCCGGCGTCGACCTCGACCTCGACTCCACTAACCAACCTGACCCAAGCATCCAACTCCATCGCCTCTGTCTCCATCCATCCATGGCGGCCATCCAGGCTCACCAACGCCTCTTCTTGGCATCTACCTGCGCCGGCCAGCGGCTGCGGCCGAGGCCGAGCCGGATCGCCGCGCCCTGCCGCGCGGCGGTCAGCGGCGGCGTGCGCACGGCGCAGAGCCCGTCTTCGTCGTCGGGGAGCGGGAGCCCCAGTAGCATGAGTCTTAACCTTGACTGGATCGCTGCCGTCCCGGCGAAGGAGGATGTCAGCGGCGCGGCGGCGGTGGAGCTGGAGAAGCTCAGGGCGATCGCGGAGGCTGCGGCGGACAGGGCCGAGATGCACGACATCATCGGGAGGCAGCGGGACAACTGGAACCACCTGCTGCTCCACTCCAACAACTCCCTCCTCCTCGCGGCGTCCGTCATGGCCGCGCTCGCGCCCGCCGCGCCCACCGTCGTGGCGCTCAAGGCATCCGCGGGGGTCCTCCTGGCCTCCGCCGCCGTCACCATGGCCGCCGTCAACAAGATCCAGCCGTCGCAGCTCGCCGAGGAGCAGCGGAACGCCACAAGGCTGTGGAGGCAGCTGGAGCGCGACGTCCGCGCCACGCTCGCGCTCGCCGCGCCGGTGACCAGGGCCGACGTCCACGACGCCATGGACAGGGTCCTCGCGCTCGACGCCGCGTACCCGCTGCCCCTCCTCCCCGGCATGCTCGAGAAGTTCCCCAAGACCGTCGAGCCGACCCGGTGGTGGCCGAAGAAGAAGCAGCAGCAGCAGCAGCAGCAGCGCGCTGCGGTGAACAAGTCGAACAGCTTCGGCAGCAGCAGCCGCCGCCGCGGCGCACGCGGCAACGGCTGGACGCCGGAGCTGGAGGAGGAGATGCGCGGCATCCTCCGCGTCATCAAGGCCAAGGACGAGCACCAGTACATCACGGTCGGCAAGATGGTCCTCGGCCTCAACAAGGGCCTCGCCGTGGCGGGGCCAGCGCTCGCCGGCACGGCCGCGGTGGCCGCGGCCTTCATCGGCTCCGGCGAGGCCGGCGCGTGGGCGTCCGGCGCCGCCGTCCTCGGCGGCGCGCTGGCGGCGGCGGCGAACACCGTCGAGCACGGCGGGCAGCTGGGCATGGTGTTCGAGCTGCTCCGCAACTGCGCGGGGTTCTACCGGAAGATGCAGGAGGAGATCGAGGCGAACCTGGGCGAGGCCGACGTGGAGCGGAGGGAGGACGGCGAGGTGTTCGAGACGAAGGTGGCGCTGCAGCTCGGGCGGAGCACGTCGGAGCTGAAGCAGTTCAGGAGGATGGCCTCGCCGGCGGTCAAGGACGACGACGTCAAGGATTTTGCCGGAAAACTCTTCTAAAAAAAAACAAATTCTAATCACTCACTTATTAGTCAGCTACCTCGTTAGGCTCGAATTTTCCAATTTGCTCCCATAGGGAGTCGAACCCAGGACCTCAGGTGCTACTGAGGCTCTTATAACCATTAGGCTACAAGCCCTTTCACAGAGGCTCGAATTTGAGCGAGATGTGCATAT
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| CDS seq | ATGGCGGCCATCCAGGCTCACCAACGCCTCTTCTTGGCATCTACCTGCGCCGGCCAGCGGCTGCGGCCGAGGCCGAGCCGGATCGCCGCGCCCTGCCGCGCGGCGGTCAGCGGCGGCGTGCGCACGGCGCAGAGCCCGTCTTCGTCGTCGGGGAGCGGGAGCCCCAGTAGCATGAGTCTTAACCTTGACTGGATCGCTGCCGTCCCGGCGAAGGAGGATGTCAGCGGCGCGGCGGCGGTGGAGCTGGAGAAGCTCAGGGCGATCGCGGAGGCTGCGGCGGACAGGGCCGAGATGCACGACATCATCGGGAGGCAGCGGGACAACTGGAACCACCTGCTGCTCCACTCCAACAACTCCCTCCTCCTCGCGGCGTCCGTCATGGCCGCGCTCGCGCCCGCCGCGCCCACCGTCGTGGCGCTCAAGGCATCCGCGGGGGTCCTCCTGGCCTCCGCCGCCGTCACCATGGCCGCCGTCAACAAGATCCAGCCGTCGCAGCTCGCCGAGGAGCAGCGGAACGCCACAAGGCTGTGGAGGCAGCTGGAGCGCGACGTCCGCGCCACGCTCGCGCTCGCCGCGCCGGTGACCAGGGCCGACGTCCACGACGCCATGGACAGGGTCCTCGCGCTCGACGCCGCGTACCCGCTGCCCCTCCTCCCCGGCATGCTCGAGAAGTTCCCCAAGACCGTCGAGCCGACCCGGTGGTGGCCGAAGAAGAAGCAGCAGCAGCAGCAGCAGCAGCGCGCTGCGGTGAACAAGTCGAACAGCTTCGGCAGCAGCAGCCGCCGCCGCGGCGCACGCGGCAACGGCTGGACGCCGGAGCTGGAGGAGGAGATGCGCGGCATCCTCCGCGTCATCAAGGCCAAGGACGAGCACCAGTACATCACGGTCGGCAAGATGGTCCTCGGCCTCAACAAGGGCCTCGCCGTGGCGGGGCCAGCGCTCGCCGGCACGGCCGCGGTGGCCGCGGCCTTCATCGGCTCCGGCGAGGCCGGCGCGTGGGCGTCCGGCGCCGCCGTCCTCGGCGGCGCGCTGGCGGCGGCGGCGAACACCGTCGAGCACGGCGGGCAGCTGGGCATGGTGTTCGAGCTGCTCCGCAACTGCGCGGGGTTCTACCGGAAGATGCAGGAGGAGATCGAGGCGAACCTGGGCGAGGCCGACGTGGAGCGGAGGGAGGACGGCGAGGTGTTCGAGACGAAGGTGGCGCTGCAGCTCGGGCGGAGCACGTCGGAGCTGAAGCAGTTCAGGAGGATGGCCTCGCCGGCGGTCAAGGACGACGACGTCAAGGATTTTGCCGGAAAACTCTTCTAA
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| Protein seq | MAAIQAHQRLFLASTCAGQRLRPRPSRIAAPCRAAVSGGVRTAQSPSSSSGSGSPSSMSLNLDWIAAVPAKEDVSGAAAVELEKLRAIAEAAADRAEMHDIIGRQRDNWNHLLLHSNNSLLLAASVMAALAPAAPTVVALKASAGVLLASAAVTMAAVNKIQPSQLAEEQRNATRLWRQLERDVRATLALAAPVTRADVHDAMDRVLALDAAYPLPLLPGMLEKFPKTVEPTRWWPKKKQQQQQQQRAAVNKSNSFGSSSRRRGARGNGWTPELEEEMRGILRVIKAKDEHQYITVGKMVLGLNKGLAVAGPALAGTAAVAAAFIGSGEAGAWASGAAVLGGALAAAANTVEHGGQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERREDGEVFETKVALQLGRSTSELKQFRRMASPAVKDDDVKDFAGKLF |
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| Function | Probable F-box protein At4g22030 [UniProtKB/Swiss-Prot:O65451] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0225900 | OsNip_02t0225900-00 | Chr02 | 7062837 | 7064444 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGGCCATCCAGGCTCACCAACGCCTCTTCTTGGCATCTACCTGCGCCGGCCAGCGGCTGCGGCCGAGGCCGAGCCGGATCGCCGCGCCCTGCCGCGCGGCGGTCAGCGGCGGCGTGCGCACGGCGCAGAGCCCGTCTTCGTCGTCGGGGAGCGGGAGCCCCAGTAGCATGAGTCTTAACCTTGACTGGATCGCTGCCGTCCCGGCGAAGGAGGATGTCAGCGGCGCGGCGGCGGTGGAGCTGGAGAAGCTCAGGGCGATCGCGGAGGCTGCGGCGGACAGGGCCGAGATGCACGACATCATCGGGAGGCAGCGGGACAACTGGAACCACCTGCTGCTCCACTCCAACAACTCCCTCCTCCTCGCGGCGTCCGTCATGGCCGCGCTCGCGCCCGCCGCGCCCACCGTCGTGGCGCTCAAGGCATCCGCGGGGGTCCTCCTGGCCTCCGCCGCCGTCACCATGGCCGCCGTCAACAAGATCCAGCCGTCGCAGCTCGCCGAGGAGCAGCGGAACGCCACAAGGCTGTGGAGGCAGCTGGAGCGCGACGTCCGCGCCACGCTCGCGCTCGCCGCGCCGGTGACCAGGGCCGACGTCCACGACGCCATGGACAGGGTCCTCGCGCTCGACGCCGCGTACCCGCTGCCCCTCCTCCCCGGCATGCTCGAGAAGTTCCCCAAGACCGTCGAGCCGACCCGGTGGTGGCCGAAGAAGAAGCAGCAGCAGCAGCAGCAGCAGCGCGCTGCGGTGAACAAGTCGAACAGCTTCGGCAGCAGCAGCCGCCGCCGCGGCGCACGCGGCAACGGCTGGACGCCGGAGCTGGAGGAGGAGATGCGCGGCATCCTCCGCGTCATCAAGGCCAAGGACGAGCACCAGTACATCACGGTCGGCAAGATGGTCCTCGGCCTCAACAAGGGCCTCGCCGTGGCGGGGCCAGCGCTCGCCGGCACGGCCGCGGTGGCCGCGGCCTTCATCGGCTCCGGCGAGGCCGGCGCGTGGGCGTCCGGCGCCGCCGTCCTCGGCGGCGCGCTGGCGGCGGCGGCGAACACCGTCGAGCACGGCGGGCAGCTGGGCATGGTGTTCGAGCTGCTCCGCAACTGCGCGGGGTTCTACCGGAAGATGCAGGAGGAGATCGAGGCGAACCTGGGCGAGGCCGACGTGGAGCGGAGGGAGGACGGCGAGGTGTTCGAGACGAAGGTGGCGCTGCAGCTCGGGCGGAGCACGTCGGAGCTGAAGCAGTTCAGGAGGATGGCCTCGCCGGCGGTCAAGGACGACGACGTCAAGGATTTTGCCGGAAAACTCTTCTAA
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| Protein seq | MAAIQAHQRLFLASTCAGQRLRPRPSRIAAPCRAAVSGGVRTAQSPSSSSGSGSPSSMSLNLDWIAAVPAKEDVSGAAAVELEKLRAIAEAAADRAEMHDIIGRQRDNWNHLLLHSNNSLLLAASVMAALAPAAPTVVALKASAGVLLASAAVTMAAVNKIQPSQLAEEQRNATRLWRQLERDVRATLALAAPVTRADVHDAMDRVLALDAAYPLPLLPGMLEKFPKTVEPTRWWPKKKQQQQQQQRAAVNKSNSFGSSSRRRGARGNGWTPELEEEMRGILRVIKAKDEHQYITVGKMVLGLNKGLAVAGPALAGTAAVAAAFIGSGEAGAWASGAAVLGGALAAAANTVEHGGQLGMVFELLRNCAGFYRKMQEEIEANLGEADVERREDGEVFETKVALQLGRSTSELKQFRRMASPAVKDDDVKDFAGKLF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0225900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009440 | RBH | 0.0 | 0.0 | 0.254693 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009530 | RBH | 0.0 | 0.820296 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009390 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009210 | RBH | 0.0 | 0.044994 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009360 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0118300 | RBH | 0.0891 | 8.8554875 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009170 | RBH | 0.0 | 0.243632 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0121100 | RBH | 0.170922 | 18.7183245 | 0.0617095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009250 | RBH | 0.139131 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009560 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009290 | RBH | 0.0 | 0.851763 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009510 | RBH | 0.0 | 0.703823 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009330 | RBH | 0.0 | 0.0 | 0.0 |
