Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0167200 | OGI:02011320 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:3614133-3616333 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAATAAAATGATTAATAATTGCTCAACTGAGCAAATGATATTTGTACTAGGTACAGAAGATAAAAATCTCTGCTCCCCAGTACAAGTTGAGTGGCAGTACAAAGTTATCGTCCTTTGCTATAAGACAAATACTCTCTACTCAGCAAGTTTTTGGCTAATTATTAGTCAGCCCATGCTCATGGATGCAAAGAAAAATGGCTCAATTCTAGACCCTTTTATTTATTCTTCAATTGAAGTTTTGAACTGACAAGCTATTTCATTTCATCCAATGGCCCATCCAGATAAATTTAGCTTTACTGTCATATATTGGGGCTGGAATCTCTTTGCATTTCCAAAATCCAGAGGCTCTCCACCCATCAGGATTCAACACTTAGCAGCCATATGACAAACATGAACAGATCATGTAATGTCCCTTTGCGCCTAATCTGCAACATATATCATTTTGCCTTCCAGATTCTTCCACAGATCATTCAGACGCCCCCCTGACCACATTACAAGAATGAATCCTCGAAGGCTCTCAAGCAAATGGCACCAAAGTGGCACAACTGGATTCAGCAACCATTTGCTTAGATTTATCAGTGCATTTTGAGTATTTGACAGCAGAAAATCCACATGTTGAATCAGCCGACACAATTCTCATCTTGGTGTACCTGAGGAATGCTATCTTCGTTGCTAAACATGGTGAGTTCTCCACCATCTGCTCCAAGATCATCAGCAACCATAAAGGCACGAACACCATCCTTCTGATCTATCCAGCTATATCCACGACCTTTGACAACTCCACGATTACTCATCAATGCCCTAACAGCCGATGCATCCCCATGTCGGCCCAAAGACGCATATATATTTGACAGAAGTACATAAGGAGATGGGTTTTTAGGATCAATTCGGAACAGGTGCTCCGCAGCACATTTCCCCAATTCAGCATTGTGATGTACAACACATGCAGCAAGTAGAACTTCCCAGATTATAGGATCATCTTTGCATGGCATTTTATGTATCAGGGCCTCCACTTCTACAAAGCGGCCAGCTCTTCCCAGTGCATCTATGAGACAAGTGTAGTGCTCAGCCAATGGTATAATCCCATAACTGTTCTCCATGGAATTAAAGAATGCCATTGCTTTGTCTACGAGCCCGGAGTGACTACATCCTGTTAAGACGGCGATGAAAGTGACAGCGTCTGGCTTCTGCTCTGTAGTTAGCATATACTCAAATAATTCAACTGCTTTGTCTCCAAGACCATTCTGAGCATATCCATGTATCATCTCATTCCAAGCAACTATGTTTTTCATCATCATGGTGTCAAAGAAAAGACGCGCATCATCCATGTTACCACATTTAGCATACATATCGATAAGCGCACTGCCCACATAGACATTCTGATCATAACCATCTTTCATAACCTGAGCATGTATCTGCCTGCCGTGAGGTATAGAAGACAATCTAGAACACGAGTTTATCATACTAGCATATGAAGATTCTGTTGGCATGATCCCATTTTCCCTCATCTGCTTGAAGAAATCGAAGGCCTCTTTATTCAAGGAATGGATAGTCAAGCCTGAGATGATGGAATTCCAGCAAACCACATCTCTCTCGGTCATCTTATTGAAAATGCTCCTAGCAATACCAATCTGACCACATTTCGAATACATATCGACCAGACCACTAGCAACAAACATGTCGTTGTGAAGCAGGAATCTTACTGAAGCAGAATGCACCTGCCTGCCAAAATCCAAAATTCCTAATTTAGAGCATGAGCTGAGGATCACGGCCAAAGTAGTCCGGTCAGGCTGCACATTTTGATGCTGCATCCTTCTAAACAACTCAATTGTATCTTGATGCTGTTCCTCCTGGCAGTATCCTGACAAAAGTGTGTTCCATGTCGTCACACTTGGCCTTGATATCTTGTCGAACATTGCACGAGCAGAATGAACATCCCTTGCCTTAATACAGGAAGCAAGCAAGTTACTGTAAGTGACCTCATTGGGCTCAAAGCCAGCCTCTTGCATCAGGCTAAGTACCTCCACTGCCTTTGCACAGCTACCCTCTTGACCAAATCCAGTTATAAGGATGTTCCAAGACACAATAGTGACACTGGGCAACGACTCGAAAACCTTGACAGCCTCATCCATCTCCACGCACTTCGTGTACATATCGATCAACGAGTTCCCCACATGTTGGTCTGATCCAAACCCTTTTCT
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| CDS seq | AGAAAAGGGTTTGGATCAGACCAACATGTGGGGAACTCGTTGATCGATATGTACACGAAGTGCGTGGAGATGGATGAGGCTGTCAAGGTTTTCGAGTCGTTGCCCAGTGTCACTATTGTGTCTTGGAACATCCTTATAACTGGATTTGGTCAAGAGGGTAGCTGTGCAAAGGCAGTGGAGGTACTTAGCCTGATGCAAGAGGCTGGCTTTGAGCCCAATGAGGTCACTTACAGTAACTTGCTTGCTTCCTGTATTAAGGCAAGGGATGTTCATTCTGCTCGTGCAATGTTCGACAAGATATCAAGGCCAAGTGTGACGACATGGAACACACTTTTGTCAGGATACTGCCAGGAGGAACAGCATCAAGATACAATTGAGTTGTTTAGAAGGATGCAGCATCAAAATGTGCAGCCTGACCGGACTACTTTGGCCGTGATCCTCAGCTCATGCTCTAAATTAGGAATTTTGGATTTTGGCAGGCAGGTGCATTCTGCTTCAGTAAGATTCCTGCTTCACAACGACATGTTTGTTGCTAGTGGTCTGGTCGATATGTATTCGAAATGTGGTCAGATTGGTATTGCTAGGAGCATTTTCAATAAGATGACCGAGAGAGATGTGGTTTGCTGGAATTCCATCATCTCAGGCTTGACTATCCATTCCTTGAATAAAGAGGCCTTCGATTTCTTCAAGCAGATGAGGGAAAATGGGATCATGCCAACAGAATCTTCATATGCTAGTATGATAAACTCGTGTTCTAGATTGTCTTCTATACCTCACGGCAGGCAGATACATGCTCAGGTTATGAAAGATGGTTATGATCAGAATGTCTATGTGGGCAGTGCGCTTATCGATATGTATGCTAAATGTGGTAACATGGATGATGCGCGTCTTTTCTTTGACACCATGATGATGAAAAACATAGTTGCTTGGAATGAGATGATACATGGATATGCTCAGAATGGTCTTGGAGACAAAGCAGTTGAATTATTTGAGTATATGCTAACTACAGAGCAGAAGCCAGACGCTGTCACTTTCATCGCCGTCTTAACAGGATGTAGTCACTCCGGGCTCGTAGACAAAGCAATGGCATTCTTTAATTCCATGGAGAACAGTTATGGGATTATACCATTGGCTGAGCACTACACTTGTCTCATAGATGCACTGGGAAGAGCTGGCCGCTTTGTAGAAGTGGAGGCCCTGATACATAAAATGCCATGCAAAGATGATCCTATAATCTGGGAAGTTCTACTTGCTGCATGTGTTGTACATCACAATGCTGAATTGGGGAAATGTGCTGCGGAGCACCTGTTCCGAATTGATCCTAAAAACCCATCTCCTTATGTACTTCTGTCAAATATATATGCGTCTTTGGGCCGACATGGGGATGCATCGGCTGTTAGGGCATTGATGAGTAATCGTGGAGTTGTCAAAGGTCGTGGATATAGCTGGATAGATCAGAAGGATGGTGTTCGTGCCTTTATGGTTGCTGATGATCTTGGAGCAGATGGTGGAGAACTCACCATGTTTAGCAACGAAGATAGCATTCCTCAGGTACACCAAGATGAGAATTGTGTCGGCTGA
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| Protein seq | RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVADDLGADGGELTMFSNEDSIPQVHQDENCVG |
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| Function | Pentatricopeptide repeat-containing protein At4g20770 [UniProtKB/Swiss-Prot:Q9SVH0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0167200 | OsNip_02t0167200-01 | Chr02 | 3614133 | 3616333 | - | RAP2018-11-26 | ||
| CDS seq | AGAAAAGGGTTTGGATCAGACCAACATGTGGGGAACTCGTTGATCGATATGTACACGAAGTGCGTGGAGATGGATGAGGCTGTCAAGGTTTTCGAGTCGTTGCCCAGTGTCACTATTGTGTCTTGGAACATCCTTATAACTGGATTTGGTCAAGAGGGTAGCTGTGCAAAGGCAGTGGAGGTACTTAGCCTGATGCAAGAGGCTGGCTTTGAGCCCAATGAGGTCACTTACAGTAACTTGCTTGCTTCCTGTATTAAGGCAAGGGATGTTCATTCTGCTCGTGCAATGTTCGACAAGATATCAAGGCCAAGTGTGACGACATGGAACACACTTTTGTCAGGATACTGCCAGGAGGAACAGCATCAAGATACAATTGAGTTGTTTAGAAGGATGCAGCATCAAAATGTGCAGCCTGACCGGACTACTTTGGCCGTGATCCTCAGCTCATGCTCTAAATTAGGAATTTTGGATTTTGGCAGGCAGGTGCATTCTGCTTCAGTAAGATTCCTGCTTCACAACGACATGTTTGTTGCTAGTGGTCTGGTCGATATGTATTCGAAATGTGGTCAGATTGGTATTGCTAGGAGCATTTTCAATAAGATGACCGAGAGAGATGTGGTTTGCTGGAATTCCATCATCTCAGGCTTGACTATCCATTCCTTGAATAAAGAGGCCTTCGATTTCTTCAAGCAGATGAGGGAAAATGGGATCATGCCAACAGAATCTTCATATGCTAGTATGATAAACTCGTGTTCTAGATTGTCTTCTATACCTCACGGCAGGCAGATACATGCTCAGGTTATGAAAGATGGTTATGATCAGAATGTCTATGTGGGCAGTGCGCTTATCGATATGTATGCTAAATGTGGTAACATGGATGATGCGCGTCTTTTCTTTGACACCATGATGATGAAAAACATAGTTGCTTGGAATGAGATGATACATGGATATGCTCAGAATGGTCTTGGAGACAAAGCAGTTGAATTATTTGAGTATATGCTAACTACAGAGCAGAAGCCAGACGCTGTCACTTTCATCGCCGTCTTAACAGGATGTAGTCACTCCGGGCTCGTAGACAAAGCAATGGCATTCTTTAATTCCATGGAGAACAGTTATGGGATTATACCATTGGCTGAGCACTACACTTGTCTCATAGATGCACTGGGAAGAGCTGGCCGCTTTGTAGAAGTGGAGGCCCTGATACATAAAATGCCATGCAAAGATGATCCTATAATCTGGGAAGTTCTACTTGCTGCATGTGTTGTACATCACAATGCTGAATTGGGGAAATGTGCTGCGGAGCACCTGTTCCGAATTGATCCTAAAAACCCATCTCCTTATGTACTTCTGTCAAATATATATGCGTCTTTGGGCCGACATGGGGATGCATCGGCTGTTAGGGCATTGATGAGTAATCGTGGAGTTGTCAAAGGTCGTGGATATAGCTGGATAGATCAGAAGGATGGTGTTCGTGCCTTTATGGTTGCTGATGATCTTGGAGCAGATGGTGGAGAACTCACCATGTTTAGCAACGAAGATAGCATTCCTCAGGTACACCAAGATGAGAATTGTGTCGGCTGA
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| Protein seq | RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVADDLGADGGELTMFSNEDSIPQVHQDENCVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.221848 | 0.0 | 0.271111 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0681900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07050 | RBH | 0.271105 | 0.0 | 0.126030 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0167200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005130 | RBH | 0.078241 | 0.410686 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005260 | RBH | 0.0 | 0.887285 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005080 | RBH | 0.342849 | 0.0 | 0.236325 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004970 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005030 | RBH | 0.217007 | 1.431629 | 0.613174 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0061700 | RBH | 0.672213 | 1.165533 | 0.494062 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004990 | RBH | 0.080229 | 0.001982 | 0.101855 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0064500 | RBH | 0.8241635 | 1.347121 | 3.971409 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005390 | RBH | 0.034347 | 0.050377 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004980 | RBH | 0.0 | 1.453889 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005220 | RBH | 0.076420 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005000 | RBH | 0.008915 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005130 | RBH | 0.0 | 0.749958 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005100 | RBH | 0.162366 | 0.0 | 0.401356 |
