Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0164900 | OGI:02010890 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:3486813-3492905 | ||||||||
| Gene Symbol | ARF6A, OsARF6a, OsARF6, ARF6 | ||||||||||
| DNA seq | AGCTCACCTCCACTCGTGGGGTTAAAACCCCGAGAACTGCACAGCAGCAGCAGCACACGGCGCAGCAGCGGCAAAGGCGGCAGCAGCAGCAGCAGCAAGAACCGAGCAAAGTCGCAAGAAGCGAGCACACACACTCCTCTCTCTCTCTCCCTCTCTAGCTACTGTTGTTCTTGGAGTTGTAGAGGAGGAGGAGGTGGTGGTGGAGGTGGTGGAGATAGGGGGAGGATGCTGATGCTCCTAGTCCTATCCTAGTTCGTCGTCAACTCCGGCGGCGGATCTGCGGTGGAGCGGCGGCTGGATTGTCGAGCGGTGAGGGTGACACGCATCTCCGGAGCTCGCCGCAGGCGGGAGGGATCTGAGGCGCGTTTCTTAATTTGCCTTCTCTTTGAGCTAGCTGCAAAGGCGGCGGCGTGCGGCGGCGGCGGCGTCTTGGCGCGCGCATTCTATCCGGCGAGTCGACGACGACGACGACCTTCGCGCCGGTGTAGCGGCGCCCGTGATGTGAAGGAATTCGAGCTCGCTCCCTTGGGATCGAAAAGGTTGCGGGTTGGAGAGGCAAGAAGGTTTGGCCGGTTTGGGGAAGGAGAGAAAGCGATGGTGGTGGTGGTGGTGGTGGTGGCTGGGTTGCTTGCTCCATGACACGACAGCGCGTTTGGGAACGCCTCGTGATCTCGGTGCAGAAAGGATTCCTTCTCTGCTCCATTTCTTGCACTCTCCACTTTGCATTCTAGATCGGTTGGGGGAAGAAGAAGAAGAGAAGAAGAAGAATGAAGCTCTCGCCGTCGGCCGGCGGCGTCTCCGACCAGCCGCCGTCGCCGCCGGAAGGTATAGAGAATAGTACTAGCTACTCTAGCATCTTCTTTCTATTGGGCATTGAGTTGACCAGTTGCATCTCTTTTGTTATTATTATTTTTTCTTTTCTTTTTGCTCATTAATGCTCTTCTCATCCATTGGGTAGTTTATGTTCTTAGGACAAGTTAGTTAGGTTGTTGGCTTGGAAGTCTTTAAATTTCGTTTGGTAATTATGTGCTCCAAATCAATTCAATGATGCAGCCTGTCGATTTCTTCATCTTTTGGGTGATTTGTGCTTTGAATAACCGAGTTACTCCTGTTACAGTAATGATACATACACATGATGCATTTTTTTTTCATTAGACTGCTTAGTTATACTTGTCTACAAGCAAATTAGTGTGATTTTTATTTATGCAGTAACTTTTTTCCCTGTAAAAGTCATCTGCTTCTGGAAACATGCAAACAATTCGTATTCTTAATTCTTGAGAACTCTATCCCCTTCCCCTTCATTTTTTTTTGAAAAATCTTTGATTTTAAACATCTTTGTTAGCCTTAAAATTATCTTCTTGAAATACGTTTTGAACTAGGATTTGATTATGGGATGGTTCAAGAATTACTGCTGACAACTAAAATTTATGTTGCTGTGTGTTCTTCTGAAATGATTTTCCCCTCTTTCAGTTGCAGAGGAGCAGAAGTGCCTAAATTCTGAGTTGTGGCATGCATGCGCCGGCCCTCTCGTTTCGCTGCCTGCGGTCGGTAGTCGGGTGGTTTATTTTCCTCAAGGCCACAGTGAGCAGGTAGTCTTCTTCATCTTAGTACAGATTTTATCCTCATAAGTACTAGATTAACCTGCTGCAGTACTTGAAGTATCAGCAAAATTAGTACCGTAAATTTTACGTTTTTTCTTATATTGCAACATCTCATTGTCAGATCTTAAATTGCAAAGGCCAAAGATTTGTTTGAGATGTTAATGAGCTTATGTACATTTCGTACGTAGGTAGCTGCATCAACAAATAAGGAAATGGAGTCTCAGATCCCCAACTATCCTAACCTGCCGCCGCAGCTTATATGCCAGCTACATAATGTGACCATGCACGTAAGTCTGGAGCAACACAAGACATCTTATTGAAAACTATGTAATACTGTTGTTACTTTTGTGTCTCATCAACTTTTTCTGTGTTTCTTCCTTTAGGCCGATGCAGAGACGGATGAAGTCTATGCGCAAATGACGCTGCAGCCACTCAGCCCGGTAAAACAGAATTTTCTACCTTCTACCCTATATTTGTGTACTCTTGTTTGTATCTAAGAAGCTTACACTTTCTCCTTATTTTTTGTTTTGTTTTGTTTGCAGCAAGAGCTCAAGGATCCATTCCTACCCGCCGAGCTAGGCACTGCCAGCAAGCAGCCAACAAATTATTTCTGCAAAACGTTAACTGCTAGTGACACAAGTACACATGGTGGATTCTCTGTTCCCCGTCGAGCAGCAGAGAAAGTATTTCCTCCGCTGGTATGTGTTCTTGGTTGGCTATTGTATGTGGCATCCTTTGAACAGATTATCTGTACTTATTCAGAGAAGACACCAAGTTATTAGTGTTTCTTAAGGGTTCCTTTGATGATTCTGTAGGATTTCACTCAGCAGCCTCCAGCTCAAGAGTTGATGGCGAAAGACCTCCATGGAAATGAATGGAAATTCCGTCATATCTTTCGTGGTTAGCTATTTTCCGTTTACATCCATTCCTTCTTAATATTGTTATTTTCCTCATAATGCTTGCTGCCTTGTTTTCACGTACAACTTATGTGAGAGTCAAATATCTATCAGTGACATTCTATTTTCAAATAAGAATCTTGAACAAGTATGATAAACATGTAAAATTAAACTTGTGCAGGCCAACCGAAGCGGCATCTTCTGACTACGGGTTGGAGCGTCTTTGTAAGTGCAAAGAGACTGGTTGCTGGAGACTCTGTCCTTTTTATCTGGTATGTTCATTCTTTGAAATTCTCAAAAGTCACTAAATTTCTCCACCTTAACCTTGTCATTCCCAGCAGAGATTTTTTATCCTGTCGTATGATGTATGTCTCTGGTTGATCAGGAATGACAGTAATCAGCTGCTTCTGGGAATTCGTCGGGCAAATAGGCCACAAACGGTCATGCCATCATCAGTATTGTCTAGTGACAGCATGCATATTGGTCTGCTTGCTGCAGCTGCTCACGCCGCATCAACAAATAGCCGGTTTACTATTTTCTATAATCCAAGGTAAACCATATTTTGCACATATCTGATCATTTCGTACAAGTACTCAATTCGCATTCATTTTGCAGAGCAAGCCCTTCGGAGTTTGTTATACCACTGGCTAAATATGTAAAGGCTGTCTACCATACCCGCATATCGGTGGGCATGCGTTTCCGGATGCTTTTTGAAACAGAAGAATCCAGTGTTAGGAGGTATGCCAAATATTTGTTTGTTATATATCATTTAATTCATTCTGTGAGCATCACGTAATGCTATTTCCTTTTCTCTACGTGTTTATGCATTGTCTGTTTATACCTTTATGGTTTTATCTTCTGTTGTGATGTGTAGAGCTTTTGCAGTCTCTACCTAATATTAAGTGGCCTAAATTGCACAATTGCTCTTATTTGCAGATACATGGGGACAATAACAGGAATAAGTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGGTAGATCTTGAAACATCTGTTTGTTTATAGACCACTCATATGCTTTTATTACCTCATTTTTAGTCTTATCATATTTTCAGATAGTGTGCTTTAGTCATTTTCTACCTTCACTATGAGCTTGCTTCAAAATTAAGCATGTGAACAAGGTTTTCTTTGAATCATGCAGGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTCCTCTCAGACTAAAGCGTCCATGGCCAACAGGCTTACCTTCTTTATATGGTACGAGTGACATTAGCATCTTAGTCAGCCCTTTAAACTATAGCAGTGCACAATGATCAATGATGTCTCGTATGTATTATTAGTGCATTGCTCTGATGTTATGATAATCATATTCACCTCTGATGGTTTTGGCAGGCGGAAAGGAGGATGACTTGGCTTCTTCTCTTATGTGGCTTCGAGATAGTCAAAACACAGGTTTCCAATCTCTGAATTTTGGAGGACTTGGTATGAGTCCGTGGATGCAGCCAAGGCTGGATAGTTCCCTACTTGGTCTGCAACCTGACATGTACCAAACGATAGCGGCGGCGGCGGCTTTACAGAACACCACTAAGCAAGTATCACCTGCCATGCTGCAGTTCCAGCAGCCGCAAAACATTGTCGGTAGATCTTCTCTTCTATCCAGTCAGATTCTGCAGCAAGCACAGCCTCAATTTCAGCAGATGTACCACCAAAACATCAATGGCAACTCAATCCAAGGCCATAGTCAGCCTGAGTACCTCCAGCAACCGCTTCAACATTGCCAATCATTTAACGAACAGAAGCCTCAGTTGCAGCCGCAGCAACAGCAGCAAGAATCACACCAGCAGCAACCTCAGCATCAACAAATGCAACAACAGAAACACTTGTCCAACTTTCAGACTGTACCAAATGCATTGTCGGTTTTTTCACAGCTTTCCTCCACCCCTCAGTCTACACCCTCCACATTGCAGACAGTTTCACCATTCTCACAGCAACATAATTTCCCTGACACAAATATCAGTTGTCTCTCTCCATCCAATGTCTCATCCATGCACGATACACTGAGATCATTCCCTTCAGAAGCTGCTTCAGACCTCCCAGGTGTGCCAAGAATCACCCCTGTACCTGTCTCTGACCCATGGTCATCTAAGCGAGTTGCAGTGGAATCTACGATCACTTCTCGCCCACATGACATTTCATCACAGATAGAGAACTTCGACTTGACACCTTCTAGTATTCCTCAAAACTCCACGTTAGCACCACTGCCTGGAAGGGAATGCCTGGTGGATCAAGATGGGAGCTCTGATCCTCAAAATCACTTCTTGTTTGGTGTAAATATAGACTCACAGTCACTTTTGATGCAAGATGGCATTCCAAGCCTTCACAATGAAAACAGTTCAAGCACAATTCCATATTCCACATCCAACTTCCTTAGCCCTTCTCAAGATGATTATCCATTGAGTCAAACACTAACTACTCCGGGCTGCTTAGATGAATCAGGATATGTTCCATGTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGGTGAGTGAATGGCTTGCATGCTTGATGCACCATCAGTTGCAAAGTTGCATGTTTTTTTTTCCTTTTTCCTCAATTCACTTTGAATTGACAAACTTGTGTCCTATAGGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCAGTTATCATGAACTTCGTAGTGAGGTAGGGCGCCTTTTTGGCCTTGAGGGCCAGTTGGAAGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGGACGACGTTCTTCTAGTTGGCGATGATCCGTGGCAGTAAGTTTTAACAATCATCACGAGTTCCTTAGCATCTTTCTTTACTGTTTATGCCATCTTCTTACATCCGTGAGGTTCGGAATCTGCAGGGAATTTGTGAACAGTGTGTCTTGCATAAAGATACTTTCGCCGCAGGAGGTTCAGCAGATGGGCAAGCCGGGCATTGAACTCTTCTCGACTTCTGCAAGGAGACTTGGCAACAGCTGTGACAACTACATGAGCAGGCAGGAATCAAGAAGCCTAAGCACTGGAATCGCGTCGGTGGGCTCAGTTGAGTTCTGAGAAATAGGGAGCTCATAGCACCCGGCGTTAGGCGTCCAGTTCTGTACGTCTCTGTAGCTCTTAGTTCTGTGACCTGGAACCCAAGCACATAGGTCAAGTGTAGCTCTAAGTTATGCGCTGTCTGGTAATTATGTCATATTACATTGACTTTTAGTGGTACCTATTACATTTTGGTATACATGCCGACACTTTGTTTCCTGGAATACTGATCATGTTAACTTAGGGCATCTAATTATTAGGTTCATGTTGAGTAGTGCTGTAGTGCCGCAGGCGCTAGCTTTGGCCATATTCTGTATATTGATGATGTTTTCCTCCTGCAATGTACTGTTAATGACAGCAAGTAAGGTTTTCCATGCAACTGTGAAAATTCAGTTCAAGAACTATTGAGCT
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| CDS seq | ATGAAGCTCTCGCCGTCGGCCGGCGGCGTCTCCGACCAGCCGCCGTCGCCGCCGGAAGTTGCAGAGGAGCAGAAGTGCCTAAATTCTGAGTTGTGGCATGCATGCGCCGGCCCTCTCGTTTCGCTGCCTGCGGTCGGTAGTCGGGTGGTTTATTTTCCTCAAGGCCACAGTGAGCAGGTAGCTGCATCAACAAATAAGGAAATGGAGTCTCAGATCCCCAACTATCCTAACCTGCCGCCGCAGCTTATATGCCAGCTACATAATGTGACCATGCACGCCGATGCAGAGACGGATGAAGTCTATGCGCAAATGACGCTGCAGCCACTCAGCCCGCAAGAGCTCAAGGATCCATTCCTACCCGCCGAGCTAGGCACTGCCAGCAAGCAGCCAACAAATTATTTCTGCAAAACGTTAACTGCTAGTGACACAAGTACACATGGTGGATTCTCTGTTCCCCGTCGAGCAGCAGAGAAAGTATTTCCTCCGCTGGATTTCACTCAGCAGCCTCCAGCTCAAGAGTTGATGGCGAAAGACCTCCATGGAAATGAATGGAAATTCCGTCATATCTTTCGTGGCCAACCGAAGCGGCATCTTCTGACTACGGGTTGGAGCGTCTTTGTAAGTGCAAAGAGACTGGTTGCTGGAGACTCTGTCCTTTTTATCTGGAATGACAGTAATCAGCTGCTTCTGGGAATTCGTCGGGCAAATAGGCCACAAACGGTCATGCCATCATCAGTATTGTCTAGTGACAGCATGCATATTGGTCTGCTTGCTGCAGCTGCTCACGCCGCATCAACAAATAGCCGGTTTACTATTTTCTATAATCCAAGAGCAAGCCCTTCGGAGTTTGTTATACCACTGGCTAAATATGTAAAGGCTGTCTACCATACCCGCATATCGGTGGGCATGCGTTTCCGGATGCTTTTTGAAACAGAAGAATCCAGTGTTAGGAGATACATGGGGACAATAACAGGAATAAGTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTCCTCTCAGACTAAAGCGTCCATGGCCAACAGGCTTACCTTCTTTATATGGCGGAAAGGAGGATGACTTGGCTTCTTCTCTTATGTGGCTTCGAGATAGTCAAAACACAGGTTTCCAATCTCTGAATTTTGGAGGACTTGGTATGAGTCCGTGGATGCAGCCAAGGCTGGATAGTTCCCTACTTGGTCTGCAACCTGACATGTACCAAACGATAGCGGCGGCGGCGGCTTTACAGAACACCACTAAGCAAGTATCACCTGCCATGCTGCAGTTCCAGCAGCCGCAAAACATTGTCGGTAGATCTTCTCTTCTATCCAGTCAGATTCTGCAGCAAGCACAGCCTCAATTTCAGCAGATGTACCACCAAAACATCAATGGCAACTCAATCCAAGGCCATAGTCAGCCTGAGTACCTCCAGCAACCGCTTCAACATTGCCAATCATTTAACGAACAGAAGCCTCAGTTGCAGCCGCAGCAACAGCAGCAAGAATCACACCAGCAGCAACCTCAGCATCAACAAATGCAACAACAGAAACACTTGTCCAACTTTCAGACTGTACCAAATGCATTGTCGGTTTTTTCACAGCTTTCCTCCACCCCTCAGTCTACACCCTCCACATTGCAGACAGTTTCACCATTCTCACAGCAACATAATTTCCCTGACACAAATATCAGTTGTCTCTCTCCATCCAATGTCTCATCCATGCACGATACACTGAGATCATTCCCTTCAGAAGCTGCTTCAGACCTCCCAGGTGTGCCAAGAATCACCCCTGTACCTGTCTCTGACCCATGGTCATCTAAGCGAGTTGCAGTGGAATCTACGATCACTTCTCGCCCACATGACATTTCATCACAGATAGAGAACTTCGACTTGACACCTTCTAGTATTCCTCAAAACTCCACGTTAGCACCACTGCCTGGAAGGGAATGCCTGGTGGATCAAGATGGGAGCTCTGATCCTCAAAATCACTTCTTGTTTGGTGTAAATATAGACTCACAGTCACTTTTGATGCAAGATGGCATTCCAAGCCTTCACAATGAAAACAGTTCAAGCACAATTCCATATTCCACATCCAACTTCCTTAGCCCTTCTCAAGATGATTATCCATTGAGTCAAACACTAACTACTCCGGGCTGCTTAGATGAATCAGGATATGTTCCATGTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCAGTTATCATGAACTTCGTAGTGAGGTAGGGCGCCTTTTTGGCCTTGAGGGCCAGTTGGAAGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGGACGACGTTCTTCTAGTTGGCGATGATCCGTGGCAGGAATTTGTGAACAGTGTGTCTTGCATAAAGATACTTTCGCCGCAGGAGGTTCAGCAGATGGGCAAGCCGGGCATTGAACTCTTCTCGACTTCTGCAAGGAGACTTGGCAACAGCTGTGACAACTACATGAGCAGGCAGGAATCAAGAAGCCTAAGCACTGGAATCGCGTCGGTGGGCTCAGTTGAGTTCTGA
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| Protein seq | MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWMNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLYGGKEDDLASSLMWLRDSQNTGFQSLNFGGLGMSPWMQPRLDSSLLGLQPDMYQTIAAAAALQNTTKQVSPAMLQFQQPQNIVGRSSLLSSQILQQAQPQFQQMYHQNINGNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQPQHQQMQQQKHLSNFQTVPNALSVFSQLSSTPQSTPSTLQTVSPFSQQHNFPDTNISCLSPSNVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKRVAVESTITSRPHDISSQIENFDLTPSSIPQNSTLAPLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPSLHNENSSSTIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELFSTSARRLGNSCDNYMSRQESRSLSTGIASVGSVEF |
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| Function | Auxin response factor 6 [UniProtKB/Swiss-Prot:Q6H6V4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0164900 | OsNip_02t0164900-01 | Chr02 | 3486813 | 3492905 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAGCTCTCGCCGTCGGCCGGCGGCGTCTCCGACCAGCCGCCGTCGCCGCCGGAAGTTGCAGAGGAGCAGAAGTGCCTAAATTCTGAGTTGTGGCATGCATGCGCCGGCCCTCTCGTTTCGCTGCCTGCGGTCGGTAGTCGGGTGGTTTATTTTCCTCAAGGCCACAGTGAGCAGGTAGCTGCATCAACAAATAAGGAAATGGAGTCTCAGATCCCCAACTATCCTAACCTGCCGCCGCAGCTTATATGCCAGCTACATAATGTGACCATGCACGCCGATGCAGAGACGGATGAAGTCTATGCGCAAATGACGCTGCAGCCACTCAGCCCGCAAGAGCTCAAGGATCCATTCCTACCCGCCGAGCTAGGCACTGCCAGCAAGCAGCCAACAAATTATTTCTGCAAAACGTTAACTGCTAGTGACACAAGTACACATGGTGGATTCTCTGTTCCCCGTCGAGCAGCAGAGAAAGTATTTCCTCCGCTGGATTTCACTCAGCAGCCTCCAGCTCAAGAGTTGATGGCGAAAGACCTCCATGGAAATGAATGGAAATTCCGTCATATCTTTCGTGGCCAACCGAAGCGGCATCTTCTGACTACGGGTTGGAGCGTCTTTGTAAGTGCAAAGAGACTGGTTGCTGGAGACTCTGTCCTTTTTATCTGGAATGACAGTAATCAGCTGCTTCTGGGAATTCGTCGGGCAAATAGGCCACAAACGGTCATGCCATCATCAGTATTGTCTAGTGACAGCATGCATATTGGTCTGCTTGCTGCAGCTGCTCACGCCGCATCAACAAATAGCCGGTTTACTATTTTCTATAATCCAAGAGCAAGCCCTTCGGAGTTTGTTATACCACTGGCTAAATATGTAAAGGCTGTCTACCATACCCGCATATCGGTGGGCATGCGTTTCCGGATGCTTTTTGAAACAGAAGAATCCAGTGTTAGGAGATACATGGGGACAATAACAGGAATAAGTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTCCTCTCAGACTAAAGCGTCCATGGCCAACAGGCTTACCTTCTTTATATGGCGGAAAGGAGGATGACTTGGCTTCTTCTCTTATGTGGCTTCGAGATAGTCAAAACACAGGTTTCCAATCTCTGAATTTTGGAGGACTTGGTATGAGTCCGTGGATGCAGCCAAGGCTGGATAGTTCCCTACTTGGTCTGCAACCTGACATGTACCAAACGATAGCGGCGGCGGCGGCTTTACAGAACACCACTAAGCAAGTATCACCTGCCATGCTGCAGTTCCAGCAGCCGCAAAACATTGTCGGTAGATCTTCTCTTCTATCCAGTCAGATTCTGCAGCAAGCACAGCCTCAATTTCAGCAGATGTACCACCAAAACATCAATGGCAACTCAATCCAAGGCCATAGTCAGCCTGAGTACCTCCAGCAACCGCTTCAACATTGCCAATCATTTAACGAACAGAAGCCTCAGTTGCAGCCGCAGCAACAGCAGCAAGAATCACACCAGCAGCAACCTCAGCATCAACAAATGCAACAACAGAAACACTTGTCCAACTTTCAGACTGTACCAAATGCATTGTCGGTTTTTTCACAGCTTTCCTCCACCCCTCAGTCTACACCCTCCACATTGCAGACAGTTTCACCATTCTCACAGCAACATAATTTCCCTGACACAAATATCAGTTGTCTCTCTCCATCCAATGTCTCATCCATGCACGATACACTGAGATCATTCCCTTCAGAAGCTGCTTCAGACCTCCCAGGTGTGCCAAGAATCACCCCTGTACCTGTCTCTGACCCATGGTCATCTAAGCGAGTTGCAGTGGAATCTACGATCACTTCTCGCCCACATGACATTTCATCACAGATAGAGAACTTCGACTTGACACCTTCTAGTATTCCTCAAAACTCCACGTTAGCACCACTGCCTGGAAGGGAATGCCTGGTGGATCAAGATGGGAGCTCTGATCCTCAAAATCACTTCTTGTTTGGTGTAAATATAGACTCACAGTCACTTTTGATGCAAGATGGCATTCCAAGCCTTCACAATGAAAACAGTTCAAGCACAATTCCATATTCCACATCCAACTTCCTTAGCCCTTCTCAAGATGATTATCCATTGAGTCAAACACTAACTACTCCGGGCTGCTTAGATGAATCAGGATATGTTCCATGTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCAGTTATCATGAACTTCGTAGTGAGGTAGGGCGCCTTTTTGGCCTTGAGGGCCAGTTGGAAGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGGACGACGTTCTTCTAGTTGGCGATGATCCGTGGCAGGAATTTGTGAACAGTGTGTCTTGCATAAAGATACTTTCGCCGCAGGAGGTTCAGCAGATGGGCAAGCCGGGCATTGAACTCTTCTCGACTTCTGCAAGGAGACTTGGCAACAGCTGTGACAACTACATGAGCAGGCAGGAATCAAGAAGCCTAAGCACTGGAATCGCGTCGGTGGGCTCAGTTGAGTTCTGA
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| Protein seq | MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWMNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLYGGKEDDLASSLMWLRDSQNTGFQSLNFGGLGMSPWMQPRLDSSLLGLQPDMYQTIAAAAALQNTTKQVSPAMLQFQQPQNIVGRSSLLSSQILQQAQPQFQQMYHQNINGNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQPQHQQMQQQKHLSNFQTVPNALSVFSQLSSTPQSTPSTLQTVSPFSQQHNFPDTNISCLSPSNVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKRVAVESTITSRPHDISSQIENFDLTPSSIPQNSTLAPLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPSLHNENSSSTIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELFSTSARRLGNSCDNYMSRQESRSLSTGIASVGSVEF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0164900 | OsNip_02t0164900-02 | Chr02 | 3487434 | 3492876 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAGCTCTCGCCGTCGGCCGGCGGCGTCTCCGACCAGCCGCCGTCGCCGCCGGAAGTTGCAGAGGAGCAGAAGTGCCTAAATTCTGAGTTGTGGCATGCATGCGCCGGCCCTCTCGTTTCGCTGCCTGCGGTCGGTAGTCGGGTGGTTTATTTTCCTCAAGGCCACAGTGAGCAGGTAGCTGCATCAACAAATAAGGAAATGGAGTCTCAGATCCCCAACTATCCTAACCTGCCGCCGCAGCTTATATGCCAGCTACATAATGTGACCATGCACGCCGATGCAGAGACGGATGAAGTCTATGCGCAAATGACGCTGCAGCCACTCAGCCCGCAAGAGCTCAAGGATCCATTCCTACCCGCCGAGCTAGGCACTGCCAGCAAGCAGCCAACAAATTATTTCTGCAAAACGTTAACTGCTAGTGACACAAGTACACATGGTGGATTCTCTGTTCCCCGTCGAGCAGCAGAGAAAGTATTTCCTCCGCTGGATTTCACTCAGCAGCCTCCAGCTCAAGAGTTGATGGCGAAAGACCTCCATGGAAATGAATGGAAATTCCGTCATATCTTTCGTGGCCAACCGAAGCGGCATCTTCTGACTACGGGTTGGAGCGTCTTTGTAAGTGCAAAGAGACTGGTTGCTGGAGACTCTGTCCTTTTTATCTGGAATGACAGTAATCAGCTGCTTCTGGGAATTCGTCGGGCAAATAGGCCACAAACGGTCATGCCATCATCAGTATTGTCTAGTGACAGCATGCATATTGGTCTGCTTGCTGCAGCTGCTCACGCCGCATCAACAAATAGCCGGTTTACTATTTTCTATAATCCAAGAGCAAGCCCTTCGGAGTTTGTTATACCACTGGCTAAATATGTAAAGGCTGTCTACCATACCCGCATATCGGTGGGCATGCGTTTCCGGATGCTTTTTGAAACAGAAGAATCCAGTGTTAGGAGATACATGGGGACAATAACAGGAATAAGTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTCCTCTCAGACTAAAGCGTCCATGGCCAACAGGCTTACCTTCTTTATATGGCGGAAAGGAGGATGACTTGGCTTCTTCTCTTATGTGGCTTCGAGATAGTCAAAACACAGGTTTCCAATCTCTGAATTTTGGAGGACTTGGTATGAGTCCGTGGATGCAGCCAAGGCTGGATAGTTCCCTACTTGGTCTGCAACCTGACATGTACCAAACGATAGCGGCGGCGGCGGCTTTACAGAACACCACTAAGCAAGTATCACCTGCCATGCTGCAGTTCCAGCAGCCGCAAAACATTGTCGGTAGATCTTCTCTTCTATCCAGTCAGATTCTGCAGCAAGCACAGCCTCAATTTCAGCAGATGTACCACCAAAACATCAATGGCAACTCAATCCAAGGCCATAGTCAGCCTGAGTACCTCCAGCAACCGCTTCAACATTGCCAATCATTTAACGAACAGAAGCCTCAGTTGCAGCCGCAGCAACAGCAGCAAGAATCACACCAGCAGCAACCTCAGCATCAACAAATGCAACAACAGAAACACTTGTCCAACTTTCAGACTGTACCAAATGCATTGTCGGTTTTTTCACAGCTTTCCTCCACCCCTCAGTCTACACCCTCCACATTGCAGACAGTTTCACCATTCTCACAGCAACATAATTTCCCTGACACAAATATCAGTTGTCTCTCTCCATCCAATGTCTCATCCATGCACGATACACTGAGATCATTCCCTTCAGAAGCTGCTTCAGACCTCCCAGGTGTGCCAAGAATCACCCCTGTACCTGTCTCTGACCCATGGTCATCTAAGCGAGTTGCAGTGGAATCTACGATCACTTCTCGCCCACATGACATTTCATCACAGATAGAGAACTTCGACTTGACACCTTCTAGTATTCCTCAAAACTCCACGTTAGCACCACTGCCTGGAAGGGAATGCCTGGTGGATCAAGATGGGAGCTCTGATCCTCAAAATCACTTCTTGTTTGGTGTAAATATAGACTCACAGTCACTTTTGATGCAAGATGGCATTCCAAGCCTTCACAATGAAAACAGTTCAAGCACAATTCCATATTCCACATCCAACTTCCTTAGCCCTTCTCAAGATGATTATCCATTGAGTCAAACACTAACTACTCCGGGCTGCTTAGATGAATCAGGATATGTTCCATGTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCAGTTATCATGAACTTCGTAGTGAGGTAGGGCGCCTTTTTGGCCTTGAGGGCCAGTTGGAAGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGGACGACGTTCTTCTAGTTGGCGATGATCCGTGGCAGGAATTTGTGAACAGTGTGTCTTGCATAAAGATACTTTCGCCGCAGGAGGTTCAGCAGATGGGCAAGCCGGGCATTGAACTCTTCTCGACTTCTGCAAGGAGACTTGGCAACAGCTGTGACAACTACATGAGCAGGCAGGAATCAAGAAGCCTAAGCACTGGAATCGCGTCGGTGGGCTCAGTTGAGTTCTGA
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| Protein seq | MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWMNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLYGGKEDDLASSLMWLRDSQNTGFQSLNFGGLGMSPWMQPRLDSSLLGLQPDMYQTIAAAAALQNTTKQVSPAMLQFQQPQNIVGRSSLLSSQILQQAQPQFQQMYHQNINGNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQPQHQQMQQQKHLSNFQTVPNALSVFSQLSSTPQSTPSTLQTVSPFSQQHNFPDTNISCLSPSNVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKRVAVESTITSRPHDISSQIENFDLTPSSIPQNSTLAPLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPSLHNENSSSTIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELFSTSARRLGNSCDNYMSRQESRSLSTGIASVGSVEF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.017519 | 1.702515 | 11.241034 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0677800 | RBH | 0.452855 | 0.933654 | 12.757449 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06910 | RBH | 1.348725 | 1.131968 | 2.745882 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0164900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004990 | RBH | 0.195851 | 5.542718 | 18.106483 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005120 | RBH | 0.733462 | 2.066115 | 7.895317 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004940 | RBH | 1.221448 | 5.399549 | 26.976540 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004830 | RBH | 0.105054 | 0.241009 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004890 | RBH | 4.697021 | 11.874294 | 46.456051 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0059500 | RBH | 10.046568 | 34.8960095 | 21.573311 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004850 | RBH | 0.204075 | 0.393517 | 5.292864 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0062200 | RBH | 11.060045 | 25.5481225 | 53.4899005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005250 | RBH | 0.053463 | 0.326353 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004830 | RBH | 0.335616 | 27.392712 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005150 | RBH | 3.616234 | 9.071963 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005080 | RBH | 0.366498 | 1.169742 | 6.917753 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004860 | RBH | 0.251279 | 6.206534 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004990 | RBH | 0.242887 | 1.148510 | 7.816191 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004950 | RBH | 1.684149 | 22.611845 | 23.214289 |
