Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0150600 | OGI:02009020 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:2787002-2789075 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGGACAACTAGATCATCTAAACAAGATAACGAATTATCATTAATCCCTGATTTACAGATGTTGTGGGCTTCCGATTGTCCAAAGTTGAAATTCCTGCCTTATCCACCAAGGAGCTTGACATGGTTCATAGAGAATAGCAATCACGTGTTGCCAGAACATGGGTTTGGGAACCTTACATCTGCTACTTATCCACTTCATCTTTCCATCGAGCGTGCACCCAATTCTCGCGAAATGTGGCGTAGGGCTCAGCACCTTTCTTCAATCGAGTCTCTTACTCTCATGTCTATAGCTGGCCTTAGAGCCCTGCCAGAGGCTATTCAGTGCTTCACGTCCCTCTGGAGACTCAGTATATTGGGATGTGGTGAGTTGGAGACGCTGCCGGAATGGCTAGGAGATTATTTCACTTGTCTGGAAGAGATTTCGATCGACACTTGCCCAATGCTGTCTTCACTGCCGGAAAGCATACGACGCCTCACTAAGCTGAAGAAGTTACGGATCACCAACTGCCCTGTATTGTCAGAGAAGTGCCAAGGAGAGGACAGGCACAAGATTGCTCATATTCTAGAGCCCATATTCCTGTAAAAGAAGCTCCCACCTAGATCAGCAGGCATACAGGCCGAGATGTAGCATGCATGGTGAGATGAGACATATATATCCCTCTTGATTGCTAGTAGTAGTAAAATGCGTGCCAGTTTTCCTCAACTTTTGTGACTCTTGTCTGCATATTGCAGGTTGGCTGATACTGTTAGCAGGGTAAGTTTACAAAACTTTTAAGGTAATATGAAAAACTATTTGATCTTTCACCAGCGGATCTATATTTGAACTAGAGGGCTGGGACCTCATACGTGCAGGCAATTGGACCGTAAAGCGAAAGCGGCTGCTTATGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTCAGAGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAATACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAACAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTCTGCTAGTAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTAAACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTTGTCGTTCATCACTCTCAGTGGCTGCTTACCAGGCTGGATTAAATCTCGATATCTGTTTGTCAGTAAGACAAGTTAGCAGATGGGTAAGCATGATGCCCATTTCCTTTTTATTTTCACGCAGATATGCTTCTTGAGTTGTTGCTGTGTTGTGTTCTTAGTATGTTGTATCTGCACAAGTATATGATGATGGTGTGAATAGTAATGAACAAAGTGCATATACCTTGTAAACAGAGATTTTCTGGCCCATTGTAATGGTTGTGATAATCATTTATGCATTTGTTCGTTGGCAACTGAACAGTACATCTGCTTGTGTGTAATCACATCATTAATGTCAGCAATGAATATCTGATACCCAAGAGGCACCTGTATGAAAAAAGAATATACATATCTTGTCGACTGCAATGTTGCAAACACATCCATGAAAAGATGCTCTGAGTGATCCTGAACTGGATGTAACATAACGGTGCTTTCTCAGAAAGAAAATGAGAGAGAGGAAGATCCTGAGCCTGGCAAGAACAGCTATGCAACTGTGCAAGTACAAGCCTTGAAATCTTGAAAGGTACATCCTGTCGATTTCACTCCTTTTTGCCCTGTATTCATGAGCCGTGAAGAGGAGACATCTCATTGCAATCCTGAATTTTGGGAGTGTGTGTGGCAGATGCTCAATTTGTTTGGTCTTTGTCCTATGAGGTTTAGGTTAGGTTCCTGGCTCTTCAACTTTGACCTGTCTGTATGAGGGCAGGTCAGCTGGAATTTCTTGGAATTTTTGCAAGTTGTGTACTTCACTTGTACTACCGAATCAGCCAAATTTTAAGCAGTATTTGTTACT
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| CDS seq | TGGACAACTAGATCATCTAAACAAGATAACGAATTATCATTAATCCCTGATTTACAGATGTTGTGGGCTTCCGATTGTCCAAAGTTGAAATTCCTGCCTTATCCACCAAGGAGCTTGACATGGTTCATAGAGAATAGCAATCACGTGTTGCCAGAACATGGGTTTGGGAACCTTACATCTGCTACTTATCCACTTCATCTTTCCATCGAGCGTGCACCCAATTCTCGCGAAATGTGGCGTAGGGCTCAGCACCTTTCTTCAATCGAGTCTCTTACTCTCATGTCTATAGCTGGCCTTAGAGCCCTGCCAGAGGCTATTCAGTGCTTCACGTCCCTCTGGAGACTCAGTATATTGGGATGTGGTGAGTTGGAGACGCTGCCGGAATGGCTAGGAGATTATTTCACTTGTCTGGAAGAGATTTCGATCGACACTTGCCCAATGCTGTCTTCACTGCCGGAAAGCATACGACGCCTCACTAAGCTGAAGAAGTTACGGATCACCAACTGCCCTGTATTGTCAGAGAAGTGCCAAGGAGAGGACAGGCACAAGATTGCTCATATTCTAGAGCCCATATTCCTGTAA
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| Protein seq | WTTRSSKQDNELSLIPDLQMLWASDCPKLKFLPYPPRSLTWFIENSNHVLPEHGFGNLTSATYPLHLSIERAPNSREMWRRAQHLSSIESLTLMSIAGLRALPEAIQCFTSLWRLSILGCGELETLPEWLGDYFTCLEEISIDTCPMLSSLPESIRRLTKLKKLRITNCPVLSEKCQGEDRHKIAHILEPIFL |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0150600 | OsNip_02t0150600-01 | Chr02 | 2787002 | 2789075 | + | RAP2018-11-26 | ||
| CDS seq | TGGACAACTAGATCATCTAAACAAGATAACGAATTATCATTAATCCCTGATTTACAGATGTTGTGGGCTTCCGATTGTCCAAAGTTGAAATTCCTGCCTTATCCACCAAGGAGCTTGACATGGTTCATAGAGAATAGCAATCACGTGTTGCCAGAACATGGGTTTGGGAACCTTACATCTGCTACTTATCCACTTCATCTTTCCATCGAGCGTGCACCCAATTCTCGCGAAATGTGGCGTAGGGCTCAGCACCTTTCTTCAATCGAGTCTCTTACTCTCATGTCTATAGCTGGCCTTAGAGCCCTGCCAGAGGCTATTCAGTGCTTCACGTCCCTCTGGAGACTCAGTATATTGGGATGTGGTGAGTTGGAGACGCTGCCGGAATGGCTAGGAGATTATTTCACTTGTCTGGAAGAGATTTCGATCGACACTTGCCCAATGCTGTCTTCACTGCCGGAAAGCATACGACGCCTCACTAAGCTGAAGAAGTTACGGATCACCAACTGCCCTGTATTGTCAGAGAAGTGCCAAGGAGAGGACAGGCACAAGATTGCTCATATTCTAGAGCCCATATTCCTGTAA
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| Protein seq | WTTRSSKQDNELSLIPDLQMLWASDCPKLKFLPYPPRSLTWFIENSNHVLPEHGFGNLTSATYPLHLSIERAPNSREMWRRAQHLSSIESLTLMSIAGLRALPEAIQCFTSLWRLSILGCGELETLPEWLGDYFTCLEEISIDTCPMLSSLPESIRRLTKLKKLRITNCPVLSEKCQGEDRHKIAHILEPIFL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.414988 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05686 | RBH | 0.291479 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0150600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0003910 | RBH | 0.391481 | 6.951470 | 1.579643 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004000 | RBH | 0.110054 | 1.369914 | 0.091207 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003940 | RBH | 0.432937 | 1.216031 | 2.076012 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003920 | RBH | 1.045453 | 0.000000 | 3.641723 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0047400 | RBH | 0.880087 | 1.892328 | 1.0673175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003840 | RBH | 0.052037 | 0.137410 | 0.373906 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0003980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0023620 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004020 | RBH | 0.000000 | 0.000000 | 0.335810 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003820 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003860 | RBH | 0.187665 | 0.0 | 0.858865 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003800 | RBH | 1.118449 | 4.813455 | 0.556164 |
