Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0118200 | OGI:02003940 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:950731-954690 | ||||||||
| Gene Symbol | RLCK60, OsRLCK60 | ||||||||||
| DNA seq | CTACTCTTCTTCCTCCTCCCTTTCTTGGCCTCTCTCCTCCACAACCCACCCTTCCTTCCTCCCTTCCTCCCCTTGGTGCGTTCTTGATTGCTGCAGAGAGGGAAAGAGAGAGAGAGAGGGAGAGATGGGGAACATCTGTGGTGGTTCAGGGAAGGCTCATGTATCGGGGGATTGCAGGCCGCCTAGCTCAGGTGAGATTCTGTCCGCTTCAAGAACTCGGTTTCTTTCCTCTTCTTTATTTGCGATCCTATAAGTTGGGCCTGTCCTGGGTGAAGATTTCTTGGTTTCTGATCGAGCGTTTGGTCTTTTCTCTCAAGTCTGATCAATACACTTGAGGTTTCTGAGGGGCGGAAATAAAGTTTTTTTTTTTAAAAAATAATCTCAGTTATTCTAGCTCAAGATCATGTTTAGGGGCGGTAGCTGTAAGAGAATCAGGGCAACTTGTTAAGTTTTCCAAGTTCTAAGTTTTTTTTTTTGTTTTTACATAATCAGTGCTGACATGGTAGCAGAGACTAGAGAAGGAATTAAACGAATTACTGTGACTAACACTTAGTTGTTTAAGATCAATACTTTCTTAGTTTTCTTCTTCAAATTTACATCTTTAATTAGCAGGTTAGAATTTATCACCAAAAAGTAGTTTCCCCCCTTTCCTGAATCACACAGGCTTCATCAACAATATAACCCCTCGTGCAATCCTAACTATTACCTTAGTAAATGGGGAAAAAAGGACTCCAACTTTGGCTGAATTCTCCATTTTTCTCCACATATTTCTGTCATAGCCAAACTTACTGCAAGAAGGTAACGTGAGCTGTTTGTTCTACAGGGACAATGACCCCCAAAACAAGCAGCAGCGTCACAACCAGCAATAGCACAACTGGGAAGCTCTCCTCTGTTGGCAGCAGCTTCATGGCGTCTTCCGGAAGCGGCGGCACGAGCAGCGGATTCGACGACGGGGTGTACCCAGAGGGCCAGATCCTGGAGGCACCAAACCTCAGGACATTCACATTCATTGAGCTCAGGACAGCCACCAAGAACTTCAGGCCGGATAGTGTTCTTGGGGAGGGAGGCTTTGGGAGGGTGTACAAAGGATGGGTGGATGAGAAGACGATGAACCCGGTGAAGGGCGGCACCGGCATGGTTGTTGCTGTCAAGAAGCTCAACTCAGAGAGCATGCAAGGTTATGAGGAATGGCAGGTAAAAATCAGGTTCTTTGTTTAGAAAGAAAGAAAAGAAATACTTGAATTGCAGGATGCCAAGTTGGTTAGCATGAGCATAGGAATCTTGCATGCTTATGGGGTTTGACTTTAGTTTTGATTACTGCTGTATAATAAACTTAACAAGTTAGAGGATGGGATCACTTTCTGGCATTGCACCATTAATGGACAGATAAAAAATGCACCAAACTTTTGAAGTTTCTCCTCATGGTCATCTCATGCTTATGGTTCTTTATGTTTGTTTAGCTTCTGATGACTTGGCTGTCTGTTTTATAAGCTGCAATGTCAATTCTTTAATAGGCCTATGTAATCTGGGTAGTGCCAAACGGCCAATAGCCCAATGCTGACCAGAACCATATTAATGTTATAATACTAGACTCTTCATAATTCCTGACCAGAAGCATCCTATAAACCACATGTTTATCACAATGCAGTGTTTCTCTGGGTCAGTTTTGGTATTCCAGGCAAAATATTACAGCTACCTCCCACATGCCTTTGCAAACTTTAACAAGATATACTACTCAATTAACTTAGTTTACTCTAACAGATGCGATTTTTTTGTCAACATTAATAACATCTAATCATATTTCTCAATGTGTACCCTGCAGTCAGAGATAAACTTTCTGGGTAGGCTCTCGCATCCAAACCTAGTCAAGCTCTTGGGCTACTGCTTTGAGGACAAGGAACTTTTGCTCGTGTATGAATTCATGGCCAAAGGGAGCTTGGAGAACCATCTTTTCAAGAGTGAGTTCTTATTGGTTTGTTGCTAATCATTTCCATCATCTTATTTATATCATGAATGAAGTTCTCTTAGGCATTTCACTGAAAATTTGGGGTGATTACCTTGCTCATGCACACTGTATTTCTTTCCCCCTGCAATACTTTGTCTTCTGGAGTAGAAAATTCTAAATCTGCAAACATATAAGTGCATGATGTGAGAATATCTCGGGGCAGTTACTTGACTTGATTGAGAGGTATACTGATGATGAAACTGGCCGCATCTCTTTTCAGAAGGATGTCCTCCACTATCATGGGAACTGAGGCTGAAGATAGCCATTGGTGCAGCTCGAGGACTTGCGTTCCTGCATGCCTCAGAAAAACAAGTCATCTACCGTGACTTTAAGGCTTCCAACATTCTTCTAGATGCTGTAAGCTTTCTGCTATTTAATGTGCCTGCAACCTTCTCATTATTGAGTTCAAATGCTGATGGTGTTCTTTGGCAGAACTATAATGCAAAGCTCTCTGATTTTGGGCTTGCTAAGCTTGGACCAACTGGTAGCAACTCACATATCACAACAAGGGTCATGGGCACATATGGTTATGCAGCACCGGAGTATGTAGCCACTGGTATGTGTCCTTACGCCTACCCTGCAGTTAATTATCAACACTTAACACTGCATGTGATAGTCATAGTACAGCTGAAATAGCAATATGTGTGGAATTTGACCTCTCAGTCTTCATATGTTCCCAAATTTAGCGTTTTTGATTGTCAATCATGTCACTTACATTTTTGGATGCATGCTATATCTCCTCCTTCTGTCCAATGATAAAATTCGGAATTTTAGCTAACAGACAATATAAATAGTCCATGGATGTTGAATAGAAGTCAAGTGTGAAAATGAATATTGCCTAACTAGAAAGGAAGCAATACCAAGTCATTGAATATATAGAATAGTGGGTATGCACTAGCTAAGTCCAGAGTCTAGACATGTATACGCATGTGACTGTAGGGCTCCATCTTGGACAGATATGGATGAGTAACATGAGTTAGCACCTACTGCCATCCAAGTGGATGATCCATCTTAGGAAAATGTGTGCTAACAATCCTTTTTATGTACGGATATTCGCCTAATGTCACTTTCCACTCAAAAAAAAGTTGACACAGTGCGCACCCAACTTTCCTCAACTCGTACCATTAATATTTCAGAGTTACTAGTTAGTTTTGCATCCCACATGAAATTCAGAATTCAAGTTTCTATAATACATTGTCAAATTATTATTAGCTCTGAAGTACAGTTTACTATCTGTAGATACTTTCTTAGCTGCCGGTGGTTATTTTCGCTTTCTCACTATCTGCTCTACTAAATCATGACTAGGTCATTTATATGTCAAGAGTGATGTTTACGGTTTCGGAGTTGTGATGCTGGAGATGATGTCCGGTCAGCGAGCACTAGACCCCAACCGTCCTAATGGGCAGCTCAGCCTTGTGGACTGGGCGAAGCCCTACTTGGCGGACCGGAGAAAGCTTGCCCGCCTCATGGACCCCCGGTTTGAGGGCCAGTATAACTCCAAACAAGCTGTTCAGGCGGCGCAGTTGACGTTAAATTGCCTGGCAGGTGAGCCCAGGAGCAGGCCCTCAATGAAGGAAGTTCTTGAGACACTCGAAAGGATCGAATCAATGAAGAGCCGAGCAAGGGATGCAAGAGGAAGCGGTTCATCAAGGGACCATAGCCATGGTCGCACCACAGCGCACCAACGGTCATCGCCGCGCCCTGATGGTCGCCGTGGATCAAGGACCAATGGTCACGCCACGAAGGCACGGTGATAAACAGCATTGGAGCTGATGACATTCTTCCTGTAAATGGCCTAAATTTTGTCTGATGTTCAGTTGGAGATGGTGATGTTTATTTGTTGCTATATCATGAAAGAAGGCCCTTGTTGCCCAATCATGATGAGTGTAAAATGTAGCAACAAGAAAGATATAACTGTAATTTGTAACCACTAGAAATAGAAGGAATAATTCTTG
More
|
||||||||||
| CDS seq | ATGGGGAACATCTGTGGTGGTTCAGGGAAGGCTCATGTATCGGGGGATTGCAGGCCGCCTAGCTCAGGGACAATGACCCCCAAAACAAGCAGCAGCGTCACAACCAGCAATAGCACAACTGGGAAGCTCTCCTCTGTTGGCAGCAGCTTCATGGCGTCTTCCGGAAGCGGCGGCACGAGCAGCGGATTCGACGACGGGGTGTACCCAGAGGGCCAGATCCTGGAGGCACCAAACCTCAGGACATTCACATTCATTGAGCTCAGGACAGCCACCAAGAACTTCAGGCCGGATAGTGTTCTTGGGGAGGGAGGCTTTGGGAGGGTGTACAAAGGATGGGTGGATGAGAAGACGATGAACCCGGTGAAGGGCGGCACCGGCATGGTTGTTGCTGTCAAGAAGCTCAACTCAGAGAGCATGCAAGGTTATGAGGAATGGCAGTCAGAGATAAACTTTCTGGGTAGGCTCTCGCATCCAAACCTAGTCAAGCTCTTGGGCTACTGCTTTGAGGACAAGGAACTTTTGCTCGTGTATGAATTCATGGCCAAAGGGAGCTTGGAGAACCATCTTTTCAAGAAAGGATGTCCTCCACTATCATGGGAACTGAGGCTGAAGATAGCCATTGGTGCAGCTCGAGGACTTGCGTTCCTGCATGCCTCAGAAAAACAAGTCATCTACCGTGACTTTAAGGCTTCCAACATTCTTCTAGATGCTAACTATAATGCAAAGCTCTCTGATTTTGGGCTTGCTAAGCTTGGACCAACTGGTAGCAACTCACATATCACAACAAGGGTCATGGGCACATATGGTTATGCAGCACCGGAGTATGTAGCCACTGGTCATTTATATGTCAAGAGTGATGTTTACGGTTTCGGAGTTGTGATGCTGGAGATGATGTCCGGTCAGCGAGCACTAGACCCCAACCGTCCTAATGGGCAGCTCAGCCTTGTGGACTGGGCGAAGCCCTACTTGGCGGACCGGAGAAAGCTTGCCCGCCTCATGGACCCCCGGTTTGAGGGCCAGTATAACTCCAAACAAGCTGTTCAGGCGGCGCAGTTGACGTTAAATTGCCTGGCAGGTGAGCCCAGGAGCAGGCCCTCAATGAAGGAAGTTCTTGAGACACTCGAAAGGATCGAATCAATGAAGAGCCGAGCAAGGGATGCAAGAGGAAGCGGTTCATCAAGGGACCATAGCCATGGTCGCACCACAGCGCACCAACGGTCATCGCCGCGCCCTGATGGTCGCCGTGGATCAAGGACCAATGGTCACGCCACGAAGGCACGGTGA
More
|
||||||||||
| Protein seq | MGNICGGSGKAHVSGDCRPPSSGTMTPKTSSSVTTSNSTTGKLSSVGSSFMASSGSGGTSSGFDDGVYPEGQILEAPNLRTFTFIELRTATKNFRPDSVLGEGGFGRVYKGWVDEKTMNPVKGGTGMVVAVKKLNSESMQGYEEWQSEINFLGRLSHPNLVKLLGYCFEDKELLLVYEFMAKGSLENHLFKKGCPPLSWELRLKIAIGAARGLAFLHASEKQVIYRDFKASNILLDANYNAKLSDFGLAKLGPTGSNSHITTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVMLEMMSGQRALDPNRPNGQLSLVDWAKPYLADRRKLARLMDPRFEGQYNSKQAVQAAQLTLNCLAGEPRSRPSMKEVLETLERIESMKSRARDARGSGSSRDHSHGRTTAHQRSSPRPDGRRGSRTNGHATKAR |
||||||||||
| Function | Probable serine/threonine-protein kinase PIX13 [UniProtKB/Swiss-Prot:Q9SII6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0118200 | OsNip_02t0118200-01 | Chr02 | 950731 | 954690 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGGAACATCTGTGGTGGTTCAGGGAAGGCTCATGTATCGGGGGATTGCAGGCCGCCTAGCTCAGGGACAATGACCCCCAAAACAAGCAGCAGCGTCACAACCAGCAATAGCACAACTGGGAAGCTCTCCTCTGTTGGCAGCAGCTTCATGGCGTCTTCCGGAAGCGGCGGCACGAGCAGCGGATTCGACGACGGGGTGTACCCAGAGGGCCAGATCCTGGAGGCACCAAACCTCAGGACATTCACATTCATTGAGCTCAGGACAGCCACCAAGAACTTCAGGCCGGATAGTGTTCTTGGGGAGGGAGGCTTTGGGAGGGTGTACAAAGGATGGGTGGATGAGAAGACGATGAACCCGGTGAAGGGCGGCACCGGCATGGTTGTTGCTGTCAAGAAGCTCAACTCAGAGAGCATGCAAGGTTATGAGGAATGGCAGTCAGAGATAAACTTTCTGGGTAGGCTCTCGCATCCAAACCTAGTCAAGCTCTTGGGCTACTGCTTTGAGGACAAGGAACTTTTGCTCGTGTATGAATTCATGGCCAAAGGGAGCTTGGAGAACCATCTTTTCAAGAAAGGATGTCCTCCACTATCATGGGAACTGAGGCTGAAGATAGCCATTGGTGCAGCTCGAGGACTTGCGTTCCTGCATGCCTCAGAAAAACAAGTCATCTACCGTGACTTTAAGGCTTCCAACATTCTTCTAGATGCTAACTATAATGCAAAGCTCTCTGATTTTGGGCTTGCTAAGCTTGGACCAACTGGTAGCAACTCACATATCACAACAAGGGTCATGGGCACATATGGTTATGCAGCACCGGAGTATGTAGCCACTGGTCATTTATATGTCAAGAGTGATGTTTACGGTTTCGGAGTTGTGATGCTGGAGATGATGTCCGGTCAGCGAGCACTAGACCCCAACCGTCCTAATGGGCAGCTCAGCCTTGTGGACTGGGCGAAGCCCTACTTGGCGGACCGGAGAAAGCTTGCCCGCCTCATGGACCCCCGGTTTGAGGGCCAGTATAACTCCAAACAAGCTGTTCAGGCGGCGCAGTTGACGTTAAATTGCCTGGCAGGTGAGCCCAGGAGCAGGCCCTCAATGAAGGAAGTTCTTGAGACACTCGAAAGGATCGAATCAATGAAGAGCCGAGCAAGGGATGCAAGAGGAAGCGGTTCATCAAGGGACCATAGCCATGGTCGCACCACAGCGCACCAACGGTCATCGCCGCGCCCTGATGGTCGCCGTGGATCAAGGACCAATGGTCACGCCACGAAGGCACGGTGA
More
|
|||||||
| Protein seq | MGNICGGSGKAHVSGDCRPPSSGTMTPKTSSSVTTSNSTTGKLSSVGSSFMASSGSGGTSSGFDDGVYPEGQILEAPNLRTFTFIELRTATKNFRPDSVLGEGGFGRVYKGWVDEKTMNPVKGGTGMVVAVKKLNSESMQGYEEWQSEINFLGRLSHPNLVKLLGYCFEDKELLLVYEFMAKGSLENHLFKKGCPPLSWELRLKIAIGAARGLAFLHASEKQVIYRDFKASNILLDANYNAKLSDFGLAKLGPTGSNSHITTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVMLEMMSGQRALDPNRPNGQLSLVDWAKPYLADRRKLARLMDPRFEGQYNSKQAVQAAQLTLNCLAGEPRSRPSMKEVLETLERIESMKSRARDARGSGSSRDHSHGRTTAHQRSSPRPDGRRGSRTNGHATKAR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.587557 | 3.664550 | 3.707391 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02600 | RBH | 1.706359 | 2.403471 | 0.930640 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0118200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001330 | RBH | 0.345447 | 25.308304 | 2.159544 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001380 | RBH | 0.214327 | 3.262761 | 1.534000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001320 | RBH | 1.099569 | 10.845711 | 1.966893 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001320 | RBH | 0.161296 | 0.170553 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001330 | RBH | 5.966434 | 6.953255 | 9.155452 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0015600 | RBH | 5.929307 | 21.7536575 | 11.1905755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001300 | RBH | 0.379107 | 0.983047 | 0.952669 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0016000 | RBH | 7.041459 | 29.5418935 | 8.3162 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001330 | RBH | 0.338771 | 0.536285 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001270 | RBH | 0.313280 | 15.732156 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001340 | RBH | 3.777188 | 11.494376 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0001380 | RBH | 0.095488 | 0.453923 | 0.155250 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001370 | RBH | 0.071405 | 7.361073 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001340 | RBH | 0.570815 | 1.616656 | 1.203496 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001310 | RBH | 1.720721 | 18.580111 | 8.402069 |
