Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0106300 | OGI:02000920 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:350795-354294 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCTCATGGGTGGTGTGATTAAGCTTATGGATAAGAAATTAATAAGACATTGACATAAATGTAGCACCTGAGTACCTAACAATAATTTAAAACTAAAAAAGAAGAAATATATGCACTAACCGCAATTGTGTGTACCAACTATTTTGCATCCATGTACATATGCGGTTGAGTTTTTCTAGAATTCGACTACCTAGGCTGCTGCTGCGAGTGTGGTGTATCGATCATAATTTGCAGGTTTTAGTCCTTGCAGCCTAGCCAATGTCTTTGAGTATGGATAGCGACCTCCTTGAACTCCTCCCTCGAAAGCCTTCTTTGAAGGGTGAGATACACAAGATTACCCTGAGATAAAAAACTTGTTCAGTAAATTAGCAAATATATCATGAGGCAGGTGTGTGTGGATAGACAATAAAGGTACAGTATATTTAGTACTATTCAGATACATGGAACCAGTCATAATGCAGTCCTTAATATTTGTCGTAAATATCTGACTGATTCTGACATAAACACTGTCAAGCAAAGAAGCATATGGATTCAAAGCCTCTTTTTTTTTGCAAAATAATTCAAAATGATATCAACCGGTTTTGCTAGGCAAATCTGAGTTGAGTAGGATTTCAAGGAACATGTCCTCTTTGAGCAATTTTATAGCCAATTTAGTAAAAAGCTCTCATCTTATTTACATTTTTAAGAGGATATTTCTATGACAGGCATTACATTGGATCATAGAAGGAATCAACGAGATGCTGACCTTTCTTCTCAGGAGGTGATACTTCCCTTTTACCAGTGACATTTTCTGCTTTATGAACTACAGAGTGAGCTAGGAAATGCAGCAGTAGCTTCCCTCCCTACTTCATCTACTGACTGCACTAACGGATCCAAGCAAGAAAAAAATTCTTCCTTGGAGATATTATGATCTATATACTTGGATTGAACTGAAGAAATTTACAGAAAAATGTCAGTGCAAAAAAACAACACACAGAAAAACTCAATTAGAGAATGGATATCAGCTATTGAGCTTGCAAAGTGAGAGGACCTGGATGGCTCAAAGCCAATGGCTCTGACCGGAGGAGCTCGCAGCGATCCCTTCTCCCATTTCAGGAAAGCCAAAGAATTTGATCTAAATTTGACCTTGATTAACCCTTTTCCTTTCTTCAAGTAGGCTGAAAACTCTGGTTCGTATTTCGTACTAGAAGAATGTGGGCTGTCAGCTGGATTGACAGGATGACTACCAGAAGTCTCCGCACGAGCACGTGCCATCACTAAACTTGTGAAATCTGACAGCATCCCTCACAAGAATATCACGGCCAGTTATCTTAGAAATGAACTTGGTAGCATTGTGACAATCCACACATACCCGTAGATTCTTGACAATCCGAATTGGCATTTCTTGTGGAACAAAGATTAAGCCAAAGGCAATTGCTAGCTTCTCGCTGTGATGGCTAATCATGTGAACCTTATCAGCATCTGCCACATCATGCAGCACCGAGCTGACATCAGGCTTGTATCCTTCTTCAGCCATCTTTGAGTTGAGCCACTCTAGCTTTTCGTATATTCTACTGGAGAAGGGGTGGGATTGGTCATCGGCTGAAAATATGTGAACTTTGTTCTTGTACTTGATCCAACTGCAGCCTGGTTCCTTCTTCACCTGCCTGTCCCTCATTCCACGTCTAAGATGAGCGACTTCAGTCCATTGACCTTTAGCAGCATGCATGCTACACAACAACACATAGCTGGCAGGGTTTTGTGGGTCAGTTTCCAAGAGATTCTCAGCTGCCCACTTGCCAATCTCCATGTTCCCACGCAGCCTACACGAGCTCAGCAATGTTGCCCATCCAAAGGCATCAGGACTGTGTGGCATCTGCTTTATGAATTCCTCAGCCTCTTTGAACCTCCCTGATCTACTGTACAAGTCAATCATACAAGTGTAGTGATCATCTATAGGAACAATACCGTGGTCCTTCTGCATGGAATCAAAGTAGTCGCACCCTTTCTCTACAAGTCCTGCACGGCTACAAGCAGAAAGGACACCGATAAATGTTACCCCATCAGGCTTCAAGCCATTTGCCAACATCTTCTCAAACAAATCTATAGTTTCTTTTGCCTTCCCAAATTGAGCATACCCTGTCACAAGAGCAGTCCAGGAGACTTGATCGTGGAAGGACATCTCATCAAATAAGCGGTGTGCATCCTCAATGCTGCCACACTTCCCATACAAGGTAACTAGTGCATTGGACACTGTAATGTACCGCATCAACCCTGAGACAAGTGCTAGGCAGTGGAACTGTGCACCCTCTTCCAGACTTGCTAAATTAGCACAAGAACTTATAACACTGCCTAGAGTGAAATCATCAGGCTTAATGCCATCCATTTGCATCTCTGAGAATGCCCGGACAGCCTCCTCACTGCAAGCATTCTGTCCATATCCAACAATCATCGCAGTCCACGATATGATGTTTCTGCATGTCATCCTCCTGAAAACAGCCTCTGCCAATCTGATGCTCCTGCACTTGGAGTACATGTCAACAAGCGCACTCCCGACAAAGACATTATCTTCATACCAAGTCCGAGTTATGTAGGCATGTATCTGCTTCCCTTCTTCCAAGGCAGCAAGGGCACCGCAGGCTGTAAGAATGCTTCCGAAAGTGTACTGATCAATGCCAACACCCTCTGCCCTCATTCTCCTGAAAACATCAAGAGCCTCCAACTGCAAACCGTTCTGAGTCAGTCCTGTAACCATCGTAGTCCAAGTAATGGAATCCCTGTCCACCATCAGCTGAAACAAACCCTTTGCATCCTCGATCATCTTGCAGCGGAGCAGCCCTGTGATCAAGGTATTGTACATGACCACAGTCTTGGCCTCCATTTCTTGAAACACCCGCCTGGCATCCCTAATGAGGCCCATCTTGGCATACATATCGACCAACGGGCTCCCAACGAAAGCATATGCCCCGAACCCAAGCCGCAGTACCTGGCAATGCACCGAGTGGCCAAGCGCGCGGTCGGAGAGAGCCGAAGCGACCATGATCATCGCCGACAGAGTAATCCGGGTTGGCCTGACGCTCTCCTCCCGGAGCAGCGCGCGGTACAGCTGGACCGACCGGGCAGGAGAGCCGGTGCTGGAGAAGCCGGTGATGAGCGCGTTGTAGGAGACGGCGTCCCGCTCGGGCATCGAGGCGAAGAGGCGCTCCATGTCCGGGACGAGCCTTGAGTGGGCGAGCGCCGAGAGGAGGGCGTTGCGGGTGAAGAGGTTGGGGTCGGGCATTTCGTCGAACACGCGGCGGGCTCGGGCGAGGCGGCCGGACTTGGCGTAGGCGGTGAGGAGGTGGTTGAGGAGGAAGGTTGGGGGAGCCTGGAGAAACGTCTTGAGAATGAGGCAGTGCACAGCGCCGGCCACGCGAACCCCGGTCCGGCCGCCGTCGCCGGCGGCGGAGGAGAGGATGGCGGCGTAGCGGTTGCATAGCGCGTGGGCGGCGTGGGTCATCGCGCGTGGGCTTTCGCTTACT
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| CDS seq | ATGACCCACGCCGCCCACGCGCTATGCAACCGCTACGCCGCCATCCTCTCCTCCGCCGCCGGCGACGGCGGCCGGACCGGGGTTCGCGTGGCCGGCGCTGTGCACTGCCTCATTCTCAAGACGTTTCTCCAGGCTCCCCCAACCTTCCTCCTCAACCACCTCCTCACCGCCTACGCCAAGTCCGGCCGCCTCGCCCGAGCCCGCCGCGTGTTCGACGAAATGCCCGACCCCAACCTCTTCACCCGCAACGCCCTCCTCTCGGCGCTCGCCCACTCAAGGCTCGTCCCGGACATGGAGCGCCTCTTCGCCTCGATGCCCGAGCGGGACGCCGTCTCCTACAACGCGCTCATCACCGGCTTCTCCAGCACCGGCTCTCCTGCCCGGTCGGTCCAGCTGTACCGCGCGCTGCTCCGGGAGGAGAGCGTCAGGCCAACCCGGATTACTCTGTCGGCGATGATCATGGTCGCTTCGGCTCTCTCCGACCGCGCGCTTGGCCACTCGGTGCATTGCCAGGTACTGCGGCTTGGGTTCGGGGCATATGCTTTCGTTGGGAGCCCGTTGGTCGATATGTATGCCAAGATGGGCCTCATTAGGGATGCCAGGCGGGTGTTTCAAGAAATGGAGGCCAAGACTGTGGTCATGTACAATACCTTGATCACAGGGCTGCTCCGCTGCAAGATGATCGAGGATGCAAAGGGTTTGTTTCAGCTGATGGTGGACAGGGATTCCATTACTTGGACTACGATGGTTACAGGACTGACTCAGAACGGTTTGCAGTTGGAGGCTCTTGATGTTTTCAGGAGAATGAGGGCAGAGGGTGTTGGCATTGATCAGTACACTTTCGGAAGCATTCTTACAGCCTGCGGTGCCCTTGCTGCCTTGGAAGAAGGGAAGCAGATACATGCCTACATAACTCGGACTTGGTATGAAGATAATGTCTTTGTCGGGAGTGCGCTTGTTGACATGTACTCCAAGTGCAGGAGCATCAGATTGGCAGAGGCTGTTTTCAGGAGGATGACATGCAGAAACATCATATCGTGGACTGCGATGATTGTTGGATATGGACAGAATGCTTGCAGTGAGGAGGCTGTCCGGGCATTCTCAGAGATGCAAATGGATGGCATTAAGCCTGATGATTTCACTCTAGGCAGTGTTATAAGTTCTTGTGCTAATTTAGCAAGTCTGGAAGAGGGTGCACAGTTCCACTGCCTAGCACTTGTCTCAGGGTTGATGCGGTACATTACAGTGTCCAATGCACTAGTTACCTTGTATGGGAAGTGTGGCAGCATTGAGGATGCACACCGCTTATTTGATGAGATGTCCTTCCACGATCAAGTCTCCTGGACTGCTCTTGTGACAGGGTATGCTCAATTTGGGAAGGCAAAAGAAACTATAGATTTGTTTGAGAAGATGTTGGCAAATGGCTTGAAGCCTGATGGGGTAACATTTATCGGTGTCCTTTCTGCTTGTAGCCGTGCAGGACTTGTAGAGAAAGGGTGCGACTACTTTGATTCCATGCAGAAGGACCACGGTATTGTTCCTATAGATGATCACTACACTTGTATGATTGACTTGTACAGTAGATCAGGGAGGTTCAAAGAGGCTGAGGAATTCATAAAGCAGATGCCACACAGTCCTGATGCCTTTGGATGGGCAACATTGCTGAGCTCGTGTAGGCTGCGTGGGAACATGGAGATTGGCAAGTGGGCAGCTGAGAATCTCTTGGAAACTGACCCACAAAACCCTGCCAGCTATGTGTTGTTGTGTAGCATGCATGCTGCTAAAGGTCAATGGACTGAAGTCGCTCATCTTAGACGTGGAATGAGGGACAGGCAGGTGAAGAAGGAACCAGGCTGCAGTTGGATCAAGTACAAGAACAAAGTTCACATATTTTCAGCCGATGACCAATCCCACCCCTTCTCCAGTAGAATATACGAAAAGCTAGAGTGGCTCAACTCAAAGATGGCTGAAGAAGGATACAAGCCTGATGTCAGCTCGGTGCTGCATGATGTGGCAGATGCTGATAAGGTTCACATGATTAGCCATCACAGCGAGAAGCTAGCAATTGCCTTTGGCTTAATCTTTGTTCCACAAGAAATGCCAATTCGGATTGTCAAGAATCTACGGGTATGTGTGGATTGTCACAATGCTACCAAGTTCATTTCTAAGATAACTGGCCGTGATATTCTTGTGAGGGATGCTGTCAGATTTCACAAGTTTAGTGATGGCACGTGCTCGTGCGGAGACTTCTGGTAG
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| Protein seq | MTHAAHALCNRYAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW |
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| Function | Putative pentatricopeptide repeat-containing protein At1g68930 [UniProtKB/Swiss-Prot:Q9CAA8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0106300 | OsNip_02t0106300-01 | Chr02 | 350795 | 354294 | - | RAP2018-11-26 | ||
| CDS seq | ATGACCCACGCCGCCCACGCGCTATGCAACCGCTACGCCGCCATCCTCTCCTCCGCCGCCGGCGACGGCGGCCGGACCGGGGTTCGCGTGGCCGGCGCTGTGCACTGCCTCATTCTCAAGACGTTTCTCCAGGCTCCCCCAACCTTCCTCCTCAACCACCTCCTCACCGCCTACGCCAAGTCCGGCCGCCTCGCCCGAGCCCGCCGCGTGTTCGACGAAATGCCCGACCCCAACCTCTTCACCCGCAACGCCCTCCTCTCGGCGCTCGCCCACTCAAGGCTCGTCCCGGACATGGAGCGCCTCTTCGCCTCGATGCCCGAGCGGGACGCCGTCTCCTACAACGCGCTCATCACCGGCTTCTCCAGCACCGGCTCTCCTGCCCGGTCGGTCCAGCTGTACCGCGCGCTGCTCCGGGAGGAGAGCGTCAGGCCAACCCGGATTACTCTGTCGGCGATGATCATGGTCGCTTCGGCTCTCTCCGACCGCGCGCTTGGCCACTCGGTGCATTGCCAGGTACTGCGGCTTGGGTTCGGGGCATATGCTTTCGTTGGGAGCCCGTTGGTCGATATGTATGCCAAGATGGGCCTCATTAGGGATGCCAGGCGGGTGTTTCAAGAAATGGAGGCCAAGACTGTGGTCATGTACAATACCTTGATCACAGGGCTGCTCCGCTGCAAGATGATCGAGGATGCAAAGGGTTTGTTTCAGCTGATGGTGGACAGGGATTCCATTACTTGGACTACGATGGTTACAGGACTGACTCAGAACGGTTTGCAGTTGGAGGCTCTTGATGTTTTCAGGAGAATGAGGGCAGAGGGTGTTGGCATTGATCAGTACACTTTCGGAAGCATTCTTACAGCCTGCGGTGCCCTTGCTGCCTTGGAAGAAGGGAAGCAGATACATGCCTACATAACTCGGACTTGGTATGAAGATAATGTCTTTGTCGGGAGTGCGCTTGTTGACATGTACTCCAAGTGCAGGAGCATCAGATTGGCAGAGGCTGTTTTCAGGAGGATGACATGCAGAAACATCATATCGTGGACTGCGATGATTGTTGGATATGGACAGAATGCTTGCAGTGAGGAGGCTGTCCGGGCATTCTCAGAGATGCAAATGGATGGCATTAAGCCTGATGATTTCACTCTAGGCAGTGTTATAAGTTCTTGTGCTAATTTAGCAAGTCTGGAAGAGGGTGCACAGTTCCACTGCCTAGCACTTGTCTCAGGGTTGATGCGGTACATTACAGTGTCCAATGCACTAGTTACCTTGTATGGGAAGTGTGGCAGCATTGAGGATGCACACCGCTTATTTGATGAGATGTCCTTCCACGATCAAGTCTCCTGGACTGCTCTTGTGACAGGGTATGCTCAATTTGGGAAGGCAAAAGAAACTATAGATTTGTTTGAGAAGATGTTGGCAAATGGCTTGAAGCCTGATGGGGTAACATTTATCGGTGTCCTTTCTGCTTGTAGCCGTGCAGGACTTGTAGAGAAAGGGTGCGACTACTTTGATTCCATGCAGAAGGACCACGGTATTGTTCCTATAGATGATCACTACACTTGTATGATTGACTTGTACAGTAGATCAGGGAGGTTCAAAGAGGCTGAGGAATTCATAAAGCAGATGCCACACAGTCCTGATGCCTTTGGATGGGCAACATTGCTGAGCTCGTGTAGGCTGCGTGGGAACATGGAGATTGGCAAGTGGGCAGCTGAGAATCTCTTGGAAACTGACCCACAAAACCCTGCCAGCTATGTGTTGTTGTGTAGCATGCATGCTGCTAAAGGTCAATGGACTGAAGTCGCTCATCTTAGACGTGGAATGAGGGACAGGCAGGTGAAGAAGGAACCAGGCTGCAGTTGGATCAAGTACAAGAACAAAGTTCACATATTTTCAGCCGATGACCAATCCCACCCCTTCTCCAGTAGAATATACGAAAAGCTAGAGTGGCTCAACTCAAAGATGGCTGAAGAAGGATACAAGCCTGATGTCAGCTCGGTGCTGCATGATGTGGCAGATGCTGATAAGGTTCACATGATTAGCCATCACAGCGAGAAGCTAGCAATTGCCTTTGGCTTAATCTTTGTTCCACAAGAAATGCCAATTCGGATTGTCAAGAATCTACGGGTATGTGTGGATTGTCACAATGCTACCAAGTTCATTTCTAAGATAACTGGCCGTGATATTCTTGTGAGGGATGCTGTCAGATTTCACAAGTTTAGTGATGGCACGTGCTCGTGCGGAGACTTCTGGTAG
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| Protein seq | MTHAAHALCNRYAAILSSAAGDGGRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.081571 | 0.083654 | 0.540017 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g01610 | RBH | 0.086391 | 0.050738 | 0.125357 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0106300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0000530 | RBH | 0.185907 | 0.0 | 1.243313 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0000560 | RBH | 0.000000 | 0.000000 | 0.468832 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0000540 | RBH | 0.204694 | 1.094481 | 1.246329 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0000540 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0000530 | RBH | 0.673871 | 0.0 | 0.277556 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0005600 | RBH | 0.673332 | 1.379917 | 0.6874875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0000530 | RBH | 0.0 | 0.072223 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0006000 | RBH | 0.9399105 | 1.50824 | 3.9636895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0000540 | RBH | 0.040670 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0000520 | RBH | 0.088654 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0000550 | RBH | 0.0 | 2.588381 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0000530 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0000530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G000540 | RBH | 0.000000 | 0.0 | 0.148288 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0000530 | RBH | 0.231762 | 0.0 | 0.606063 |
