Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0972000 | OGI:01125830 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:42884953-42886230 | ||||||||
| Gene Symbol | OsRFPH2-3 | ||||||||||
| DNA seq | ACATCTCTCACATCTCTCTCCTCCACTCCGCTCCCGTCGCCGCCACATCGCCATGGACGACGACGCCTCCTCCTACACCTACTGTTGCCACAGCTGCGACAGCTTCGTCCACCCGCACCCCCACCTCGACGCCGCTGTGCTCTGTCCCCACTGCAACGCCGCCGGCTTCCTTCACGACCACGAGATGCCTCCCGCCGCCGACCACTCCCCGTTCAACCCCCCCGTCATCGTCCTCCGCCGCTCCGCATCCCCCGACGACGCCACCACCTTCGATCTCCTCTACGACGACGGCGCCTCCTCCGCCCTCCGCCCCCTCTTCGACCGCCTCCTCCTCCGCATCCCCTCCGCCTCCGACAACCCCAACCCCCCGGCCTCCAAAGCCGCCGTCGACTCCATGCCCACCATCCTCATCGGGGCCTGCCACCTCGCCGCCGACTCCCACTGCGCCGTCTGCAAGGAACCCTTCCACCTCGCCGCCGAGGCCAGGGAGATGCCCTGCGCCCACATCTACCACCACAATTGCATCCTCCCCTGGCTCGCTCTCCACAACTCATGCCCCGTCTGCCGCCACCGCATGCCCACCGATGACCACGACTCGACCAATGCTGCTGCTGCTCAGGCTGCCGCCGGAAGCAGCGACGAGGACGCCACCACCGTGGGTACTCTCACCATTTGGAGGCTTCCCGGTGGGGGATATGCGGTTGGGAGGTTTGCTGCTGCTGGTGGGACAAGAGCCGGTGAGAGGGAGCTCCCGGTTCTCTACACCCAGATGGATGATGGCGGCTTCAACGGCGGCGGCGGCTCGGGCTCGCCGACGATGATCGGGTGGTCATCTAGAGGGAGTCGTTCGTCCCAGAGACAGAGAAGCATCATCCCACGCTTGTTTCGCAACATGTTTGCATGCTTTAGGCATCATGATGCAACTGCAGATTCAGGAGATTATTCCTCACGGGCTGGGAGGAGATCCTCCTCCTCTGTCTTCACCCGCAGCCTGAGGAGCCAGATCACGAGCTGGAGATCGGAAGATGGCCACCCCGATGCCATTGCTACTAGATGATAATGGTGGTATGATTTGGAAATTGATCATCACCTGCATCTTTTTGCTACCTTTTGCTTGATGATTTTGTGTAAGTAGTAGATAATATCAAGAAAGATATGATGAGTATTATTGTTTGTAGGCATAGCAAAATTGCTGCTTAATTTGTACATATAGCAGATTGTTCAGGTAACAATGTAACATTACAATTCAAATATCATATATCTTTGGTTTGCCTATTC
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| CDS seq | ATGGACGACGACGCCTCCTCCTACACCTACTGTTGCCACAGCTGCGACAGCTTCGTCCACCCGCACCCCCACCTCGACGCCGCTGTGCTCTGTCCCCACTGCAACGCCGCCGGCTTCCTTCACGACCACGAGATGCCTCCCGCCGCCGACCACTCCCCGTTCAACCCCCCCGTCATCGTCCTCCGCCGCTCCGCATCCCCCGACGACGCCACCACCTTCGATCTCCTCTACGACGACGGCGCCTCCTCCGCCCTCCGCCCCCTCTTCGACCGCCTCCTCCTCCGCATCCCCTCCGCCTCCGACAACCCCAACCCCCCGGCCTCCAAAGCCGCCGTCGACTCCATGCCCACCATCCTCATCGGGGCCTGCCACCTCGCCGCCGACTCCCACTGCGCCGTCTGCAAGGAACCCTTCCACCTCGCCGCCGAGGCCAGGGAGATGCCCTGCGCCCACATCTACCACCACAATTGCATCCTCCCCTGGCTCGCTCTCCACAACTCATGCCCCGTCTGCCGCCACCGCATGCCCACCGATGACCACGACTCGACCAATGCTGCTGCTGCTCAGGCTGCCGCCGGAAGCAGCGACGAGGACGCCACCACCGTGGGTACTCTCACCATTTGGAGGCTTCCCGGTGGGGGATATGCGGTTGGGAGGTTTGCTGCTGCTGGTGGGACAAGAGCCGGTGAGAGGGAGCTCCCGGTTCTCTACACCCAGATGGATGATGGCGGCTTCAACGGCGGCGGCGGCTCGGGCTCGCCGACGATGATCGGGTGGTCATCTAGAGGGAGTCGTTCGTCCCAGAGACAGAGAAGCATCATCCCACGCTTGTTTCGCAACATGTTTGCATGCTTTAGGCATCATGATGCAACTGCAGATTCAGGAGATTATTCCTCACGGGCTGGGAGGAGATCCTCCTCCTCTGTCTTCACCCGCAGCCTGAGGAGCCAGATCACGAGCTGGAGATCGGAAGATGGCCACCCCGATGCCATTGCTACTAGATGA
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| Protein seq | MDDDASSYTYCCHSCDSFVHPHPHLDAAVLCPHCNAAGFLHDHEMPPAADHSPFNPPVIVLRRSASPDDATTFDLLYDDGASSALRPLFDRLLLRIPSASDNPNPPASKAAVDSMPTILIGACHLAADSHCAVCKEPFHLAAEAREMPCAHIYHHNCILPWLALHNSCPVCRHRMPTDDHDSTNAAAAQAAAGSSDEDATTVGTLTIWRLPGGGYAVGRFAAAGGTRAGERELPVLYTQMDDGGFNGGGGSGSPTMIGWSSRGSRSSQRQRSIIPRLFRNMFACFRHHDATADSGDYSSRAGRRSSSSVFTRSLRSQITSWRSEDGHPDAIATR |
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| Function | E3 ubiquitin-protein ligase RDUF1 [UniProtKB/Swiss-Prot:Q9SNB6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0972000 | OsNip_01t0972000-01 | Chr01 | 42884953 | 42886230 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACGACGACGCCTCCTCCTACACCTACTGTTGCCACAGCTGCGACAGCTTCGTCCACCCGCACCCCCACCTCGACGCCGCTGTGCTCTGTCCCCACTGCAACGCCGCCGGCTTCCTTCACGACCACGAGATGCCTCCCGCCGCCGACCACTCCCCGTTCAACCCCCCCGTCATCGTCCTCCGCCGCTCCGCATCCCCCGACGACGCCACCACCTTCGATCTCCTCTACGACGACGGCGCCTCCTCCGCCCTCCGCCCCCTCTTCGACCGCCTCCTCCTCCGCATCCCCTCCGCCTCCGACAACCCCAACCCCCCGGCCTCCAAAGCCGCCGTCGACTCCATGCCCACCATCCTCATCGGGGCCTGCCACCTCGCCGCCGACTCCCACTGCGCCGTCTGCAAGGAACCCTTCCACCTCGCCGCCGAGGCCAGGGAGATGCCCTGCGCCCACATCTACCACCACAATTGCATCCTCCCCTGGCTCGCTCTCCACAACTCATGCCCCGTCTGCCGCCACCGCATGCCCACCGATGACCACGACTCGACCAATGCTGCTGCTGCTCAGGCTGCCGCCGGAAGCAGCGACGAGGACGCCACCACCGTGGGTACTCTCACCATTTGGAGGCTTCCCGGTGGGGGATATGCGGTTGGGAGGTTTGCTGCTGCTGGTGGGACAAGAGCCGGTGAGAGGGAGCTCCCGGTTCTCTACACCCAGATGGATGATGGCGGCTTCAACGGCGGCGGCGGCTCGGGCTCGCCGACGATGATCGGGTGGTCATCTAGAGGGAGTCGTTCGTCCCAGAGACAGAGAAGCATCATCCCACGCTTGTTTCGCAACATGTTTGCATGCTTTAGGCATCATGATGCAACTGCAGATTCAGGAGATTATTCCTCACGGGCTGGGAGGAGATCCTCCTCCTCTGTCTTCACCCGCAGCCTGAGGAGCCAGATCACGAGCTGGAGATCGGAAGATGGCCACCCCGATGCCATTGCTACTAGATGA
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| Protein seq | MDDDASSYTYCCHSCDSFVHPHPHLDAAVLCPHCNAAGFLHDHEMPPAADHSPFNPPVIVLRRSASPDDATTFDLLYDDGASSALRPLFDRLLLRIPSASDNPNPPASKAAVDSMPTILIGACHLAADSHCAVCKEPFHLAAEAREMPCAHIYHHNCILPWLALHNSCPVCRHRMPTDDHDSTNAAAAQAAAGSSDEDATTVGTLTIWRLPGGGYAVGRFAAAGGTRAGERELPVLYTQMDDGGFNGGGGSGSPTMIGWSSRGSRSSQRQRSIIPRLFRNMFACFRHHDATADSGDYSSRAGRRSSSSVFTRSLRSQITSWRSEDGHPDAIATR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.623172 | 1.305863 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0110000 | RBH | 4.367433 | 3.609869 | 1.558968 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g74040 | RBH | 0.919283 | 0.771373 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0972000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048690 | RBH | 0.0 | 0.0 | 0.415601 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048180 | RBH | 0.0 | 0.704722 | 0.208378 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048570 | RBH | 0.271636 | 1.452420 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048110 | RBH | 0.0 | 0.038654 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047650 | RBH | 1.375136 | 0.0 | 0.743918 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0705300 | RBH | 0.773989 | 31.7828435 | 0.316394 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047120 | RBH | 0.125624 | 0.211049 | 0.081082 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0706500 | RBH | 0.6525335 | 25.9378395 | 0.9062475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0047790 | RBH | 0.060207 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047850 | RBH | 0.181900 | 0.0 | 0.605313 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047600 | RBH | 0.0 | 0.902675 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047930 | RBH | 0.0 | 0.0 | 0.233142 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047680 | RBH | 0.311433 | 0.0 | 0.514361 |
