Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0957000 | OGI:01123620 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:42177836-42183724 | ||||||||
| Gene Symbol | NADK1, OsNADK1 | ||||||||||
| DNA seq | GTGGTGCTCCTCCTCCTCAACAGCGTCGCCTCGCGTCGGCGTCGCCTCTCACCACCCAACCACCAGTCCACCACCCACCTCTCTCCCTCCCCTCCCCTCCCCAAACCCAACCCGAGCCGAGGCCGGAATTTCCTTTTTGGTGCGACGACGACGAGGTGAGGGTGAGCCAACCGCCGGATCGCGCCGCCATGTCGCTCGACGAGCTTCCGCACAAGGTAACCGCGGGTTTTGGCAATCTGCGTGGCTGCGGCTTCGAATTGAGCATTTCGGGGAGGGTGGTTCTGAAATCTGTTTTTGGGGTTCGCTGATGGGTGGTTTGGTTTCTCTCTGTGTGCCAGAAGCTGGCATCCTCGGAGGGAATTCGGTTCGCGCGGTCGGATTCCAGGTTCCGGAGCCTTAGCCCAGCGCCCATCCCAATCCCAACTGCCCCAAGCTTCAGATCATTGGTCGACCCGGTACGTGCGTGCTCTCGATTGGGTACTGGATTATCGCAAGGATGCGTGTCCATTTCCATCACGTCTCGTAGTCATCTTCTTTGCTATCGCTTGCTTAGCATTAGGGGAGTCTGTACTGTGTGGTATTGTCCTTAGAAGTCATGCTACTTTCACAAAAACAATGTGTTTCACAATGTTCCATTGCTCTGCCTCATCATTGGCAAGCTTGAAGACCAGAGGTCATGAGCTCGTGTCCCCCCCATTTTTGTGGGGGAAGACTTGGCCATAGACTTTCGCATTGTAAGGCACGTTGTGTTGAGTCCAACTCTGTCTTTTTTATTATTTGGGAGGGAGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGAGACCACTACGGTCCTACCTTTTCGTTGATTTTTTTAAAAGCAAGTTGTGAAAATTGTACAAGATAAAAATAGAAAAAGAGGAGCACGCAGGCGCAAGGAGAGAGCTTGCGCACACAAGCACAAAACGAATTCAGATTTTCTTTTTGGGTGGTCATGTAGAGCCTCTGCACCCTTATTGTGCATTCTTCTTTATTTTGTTTTGACCCGTTTTCCTAGAATTCAATGGTTGGTTTCCAGGCATTGGGCATGAGTTCTCGTGGGAGCCATGCAAACATTGTGAGAAAATTTCCAAATAGGTCATAAAACGGATAAAAATGCTTGGGCCTAAACTCACAGTTTTTAGCAAGCCTAATCCTTTAGGAATTTCCATATTTGAAATTGGACGATTTTGGAGAGTACCATTATGTAGTCTTGTAATCCCTCTGTTTCATATCATAAGGTGCTTTGATTTTTTCCTAGTCAAACTTTGACCAAGTTTATAGAAAAAAATAGTCACATATAAAACAGCAAACTAGTTTCATTAAATCTAACATTGAATATATTTTGATAATATGTTTGTTTTGTGTTGAAAATACTACCATATTTTTCTATAAACTTGGTTAAACTTAACGAAGTTTGACTAGGAAAACAGTCAAAGCGACTTATAATATGAAATGTGGGGAGTAATTGCGTATTGGACATCAAATTTGAAGTTACTGTTACTGGATCATGTACTTGATTGTATGGGACTATGGGTCGAATTTTAATGTAATGTTCGAGTTTAAAATTTCTAGTTAGCGTCAAAATAAGCCCAACAAAGAGTTAAGGGATGGTTTATTTCTCAGGTTAAGTTTAAAGCTTAGTCCATTGCTCCATTTGAAAATCTGAAGCCAGTTGGGATAGACTATAGAGCTTATTACCAGTTCCTTTGCATTGCAGGTTTCTGATGAGAGAGTAAACCATGATACTGTGACCTCACATGAAAGTGAAATTGGGTCTGGGTCCATCTCCACAGTTAGCTCAACAGTTAGTTCAGTAGAATCAGAGAAAGCAGCTTATGAATTCCTTGCTCAAACTCCTATCAAGTCAACCGATGCACACCTTGTTGAGTTTTCAGAAGCTATGAGAAGTAAGGAGACAAAAGCTTTACATGGCACTACCAAATTCCTGATTATCTACAGTTATATATACCTTTCAGTCCTTTCACTTGCATTCAAAAAACAAAATATTGATAAATATAGTTTATTTTTAAACTGAAGCTGTTGCAAAAGCATTGCGACGAGTTGCAGAAGGGAAAGCTGCTGCTCAAGCTGAGGCGGAAGAGTGGAGGCGTAAATATGAATTAGAGATGGCACACAAACAGCAGAGAAAAATCAAAGGTTAGTTTTGTATACATTCGTAGTTGCTATTCCAGGAGCTATCTCCAAAAATCTAAATTGGAATTCTACCTTGTGCAGGCTATGGCAGTTGTGCCAATAATGAATTAGAAAAGTTGGCCAGCCAACTAACACTGGAGACGCCTGCATCTGATCAAGCGGGATGTTGTGGAAATCATGGTATATGTTCACATGAGGTTCTTCAGGATGAAAGTCCTGGTCCTAACCCCCGATCTAGTCACAAGCTGGTGAGTAGAAAGGCATCATTTAGACTTTCATGGGGATGCAATGGGGATAAAAACGGCCAGCACAAGCATGATTTTGTATCATTTGAAAAGGGAGATATAACAACAGCAGAGCGCAGCAACAAGCAGGTTAGTCCTCCTGTGCTGGAACAGTCAAGAATATTATTCTAATTATTTCACTCCAGTAGCTGGAATAACTAGACCAATGAATCGTCTCTTATGCACATCTATTTCTGTTACAACGATTTTTTTTATTTCAGATTTTGCTGAAATGGGAATCCTCGCCACAAACTGTTCTTTTCATAACCAAACCTAATTCTAACTCCGTGCATGTTCTTTGTGCTGAAATGGTCAGGTGTGTTCTTTGATTTTTATATTTTAAATGCCCTAAATATCTGACAGATGCATGCACGTTTTAAGTATTGTGTTTGCACTGCTAAATGTACTATTTATTTTTCTGCAGATGGCTTAAGGAACATAAAAAGATAAATGTTGTTGTAGAGCCACGTGTTAGCAAGGAACTCTTAACAGAAGATTCCTACTACAATTTCATCCAAACATGGGATGATGGTAAGGCATTTCTATTGATTTAATACATTAGTTTCATGCTGATTCATATTTTTTCTTTTGAAATACTTCATATGCTTAAGAGAAAAAAAAATGGTGTTTCAGTTATGAACCCTTTCCTTGTCATTGATATTCTGAAAAATGAAAGAACTTTCATGATAACTAAATTAGTTGATTACTGCCGAAATGGCATGGGTATATAGTACGGGCATGCTTTTGCTTTACTTTATCACCCTTATGTATCCTATCTTGTTTTACATGGGGGCAAAATTTACAATGAGAACTGAATTAGTTGATTACTGCTTGAATTCGAGATGTTTATTACCTATGTCTAGATTTTTATGAAATCATCCAATCACATCTCAATAAAGATTTCGGTAAAAATCCCCTTCTACTGCTTGAATTTGTGATGTTTATTACCTCTGTATGGAATTTTCTGAAATATTCCAATCACATCCCAATAAAGTAATATCCTTGTACTAGATGTCGGTACAAATCATTCTTGGCATTGAATTGGATACACATTATAAAGTTGTATTTTGTATCAAATGGGAAGATTAGACATCTTGTTTGAGTAAAGTAGTTCTATTCATTCACCTAGCACTCTCCCTTATCTGTGCAACTAATTAGATAATTCTGATAGATGAGGAGAAAAAGATGTTGCACACAAAGGTTGATCTCATTGTAACTCTTGGTGGTGATGGGACTGTTTTATGGGTAAGTAAATTCAATTCTTTGTCTAGAGTTCTGCCTCAACCACTGTATCTTTTGATCGAATCAGACCAACTAGAGGATTAACCTTTTTTTTTTTCCAAAGGTCCATATATTTAGTCAATAATCAATATTGCTTAGTTTAATGGCATATGTGGGGTAGAATTGGCTGACAGCTGAAATGGAAGGTCTGTCGGTGCCTGCAGCATAAGTTATCATGAGAATTGCTTCTTCACAGTTAGGCAGAGTTCTTTTCTGATTCTGACCTATCAAAATCAAAAGTTGGAAGGTTCTAGTACAAATTAGCTATCAAAACCAACTTACCTGATATTTATTGCTTTGTTCTTCCATATTTAGGCGACTGATTATTCCTGCATTTGAAACTATAATTGCTTCTCAATTTGTACTAGTTACTAGTTTTTGTACATTGCTCTGCTGGGCTGACATTTAAATACATGGTGAATCAATCTCTTAACAGGCTGCGTCTTTGTTCAAAGGGCCAGTTCCTCCGGTTGTTGCTTTCTCCCTAGGATCACTGGGATTCATGACACCTTTCCGTATCCTTTTATTATGGATGTTGACTGCTTTCTCGATATCGTTTTGTGTAGTGACTGGTTCTTACTGTTTTGCTATCCAATCTACATTTTTAGTAAGTTTGGATTTGGTCTAAAAGAAACCTGCTTGTTAGACGATAAATCTCACATGAAGCTCCCTGCTCTCCTGTTAACATTTGTGTTATCCATGTTGTCCTCCTTAACATGCTTTTCAGCAAGTGAGCAATATCGTGATTGTCTGGACAATGTGCTGAATGGACCATTTAGCATCACATTGAGAAACCGTCTACAGTGCCATGTAATCCGTGATGCAGCAAAGGATGAACTTGAGACTGAGGAGCCAATTTTAGTGTTAAACGAAGTCACAATTGACCGTGGAATATCATCTTACCTTACCTACTTGGAATGCTACTGTGATAGTTCTTTCGTTACATGTGTACAAGGGGATGGACTGATCATATCAACAACATCTGGAAGCACGGCATATTCATTGGCAGCTGGAGGATCCATGGTTCATCCACAGGTATGCCCTACATCGCATGATACATCCTTAGCACTTGAGTATTTACTGATTAATTTTATTGGATTATCTTCTTGGGCATTTCCTAATCACACCCCCTTAGATTTCTGCAATAAATCGTGAAGCTTTTTTCCCCTTGGTTCTAAAATTGTGTAATGTGGTTCAGAAGTTTAGATAAGTTGCACTGAACACCAGAATCTGATCTGTTTCACAAACATAGGCTACCCTGTACTACCTGTAATTCTTGTAGCAAATTAGCAATGTCTATAAATTAACCTTTTGAGGCCTAGTTACAATCATGAAATGTTGCTATTTCCTTTGTCCAGCTGCTCAACATAACTTGTCGACTCTATTTTGGTGGTCTCAAATGTTGTGCTGGTATATGCAGGTCCCAGGAATCCTATTCACGCCGATCTGCCCGCATTCCCTGTCATTCAGGCCTTTGATACTGCCTGAATATGTGACCCTGCGCGTACAAGTGCCACATAACAGCAGGGGCCAAGCTTGGGCATCATTCGATGGCAAAGATCGGAAGCTGCTGTCACCCGGGGATGCTCTCATCTGCAGCATTTCTCCATGGCCTGTGCCCACGGCTTGCCTGGTGGATTCAACAACCGATTTCCTACGCAGCATCCACGAGGGTCTCCACTGGAACCTGAGGAAGTCCCAGTCATTCGACGGCCCGCGTGATTGATCCCAGCTCCTGGATACAGTCCAGTGTCAGAGTTGAGAGTTTCAGCTGGCCATCAGAAGAGTTTCCCACGAGTCCAGCTAACACCGAGCGGATAAATGTACCTAGCAGAGTTTGTTGCTTGTTACCATTCCATATACATATACATATACATATACATATACTAGAAGGCTGCTGCGTGTAGATTTGGGGTAAGTACTGGGGACTGAAGAATGAATCGAAATAGAAAGTATCGAGAATACACTGTGCCATGATGAATGTATAACAGTAGATGTGGCAGGCAACATATACTGATGTGCACTAGCATCTGAAGTAGCATGGGAGAGTAGATACCGGTGACAAGTCATCGAAGTGTAAAAACACAACATGTATACTGGTATATATATGTACCCCCATGATCTGAATGAAATAATTTGACCATGGAAAGG
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| CDS seq | ATGTCGCTCGACGAGCTTCCGCACAAGGTTTCTGATGAGAGAGTAAACCATGATACTGTGACCTCACATGAAAGTGAAATTGGGTCTGGGTCCATCTCCACAGTTAGCTCAACAGTTAGTTCAGTAGAATCAGAGAAAGCAGCTTATGAATTCCTTGCTCAAACTCCTATCAAGTCAACCGATGCACACCTTGTTGAGTTTTCAGAAGCTATGAGAACTGTTGCAAAAGCATTGCGACGAGTTGCAGAAGGGAAAGCTGCTGCTCAAGCTGAGGCGGAAGAGTGGAGGCGTAAATATGAATTAGAGATGGCACACAAACAGCAGAGAAAAATCAAAGGCTATGGCAGTTGTGCCAATAATGAATTAGAAAAGTTGGCCAGCCAACTAACACTGGAGACGCCTGCATCTGATCAAGCGGGATGTTGTGGAAATCATGGTATATGTTCACATGAGGTTCTTCAGGATGAAAGTCCTGGTCCTAACCCCCGATCTAGTCACAAGCTGGTGAGTAGAAAGGCATCATTTAGACTTTCATGGGGATGCAATGGGGATAAAAACGGCCAGCACAAGCATGATTTTGTATCATTTGAAAAGGGAGATATAACAACAGCAGAGCGCAGCAACAAGCAGATTTTGCTGAAATGGGAATCCTCGCCACAAACTGTTCTTTTCATAACCAAACCTAATTCTAACTCCGTGCATGTTCTTTGTGCTGAAATGGTCAGATGGCTTAAGGAACATAAAAAGATAAATGTTGTTGTAGAGCCACGTGTTAGCAAGGAACTCTTAACAGAAGATTCCTACTACAATTTCATCCAAACATGGGATGATGATGAGGAGAAAAAGATGTTGCACACAAAGGTTGATCTCATTGTAACTCTTGGTGGTGATGGGACTGTTTTATGGGCTGCGTCTTTGTTCAAAGGGCCAGTTCCTCCGGTTGTTGCTTTCTCCCTAGGATCACTGGGATTCATGACACCTTTCCCAAGTGAGCAATATCGTGATTGTCTGGACAATGTGCTGAATGGACCATTTAGCATCACATTGAGAAACCGTCTACAGTGCCATGTAATCCGTGATGCAGCAAAGGATGAACTTGAGACTGAGGAGCCAATTTTAGTGTTAAACGAAGTCACAATTGACCGTGGAATATCATCTTACCTTACCTACTTGGAATGCTACTGTGATAGTTCTTTCGTTACATGTGTACAAGGGGATGGACTGATCATATCAACAACATCTGGAAGCACGGCATATTCATTGGCAGCTGGAGGATCCATGGTTCATCCACAGGTCCCAGGAATCCTATTCACGCCGATCTGCCCGCATTCCCTGTCATTCAGGCCTTTGATACTGCCTGAATATGTGACCCTGCGCGTACAAGTGCCACATAACAGCAGGGGCCAAGCTTGGGCATCATTCGATGGCAAAGATCGGAAGCTGCTGTCACCCGGGGATGCTCTCATCTGCAGCATTTCTCCATGGCCTGTGCCCACGGCTTGCCTGGTGGATTCAACAACCGATTTCCTACGCAGCATCCACGAGGGTCTCCACTGGAACCTGAGGAAGTCCCAGTCATTCGACGGCCCGCGTGATTGA
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| Protein seq | MSLDELPHKVSDERVNHDTVTSHESEIGSGSISTVSSTVSSVESEKAAYEFLAQTPIKSTDAHLVEFSEAMRTVAKALRRVAEGKAAAQAEAEEWRRKYELEMAHKQQRKIKGYGSCANNELEKLASQLTLETPASDQAGCCGNHGICSHEVLQDESPGPNPRSSHKLVSRKASFRLSWGCNGDKNGQHKHDFVSFEKGDITTAERSNKQILLKWESSPQTVLFITKPNSNSVHVLCAEMVRWLKEHKKINVVVEPRVSKELLTEDSYYNFIQTWDDDEEKKMLHTKVDLIVTLGGDGTVLWAASLFKGPVPPVVAFSLGSLGFMTPFPSEQYRDCLDNVLNGPFSITLRNRLQCHVIRDAAKDELETEEPILVLNEVTIDRGISSYLTYLECYCDSSFVTCVQGDGLIISTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPHNSRGQAWASFDGKDRKLLSPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPRD |
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| Function | Probable NAD kinase 1 [UniProtKB/Swiss-Prot:Q5JK52] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0957000 | OsNip_01t0957000-01 | Chr01 | 42177836 | 42183724 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCGCTCGACGAGCTTCCGCACAAGGTTTCTGATGAGAGAGTAAACCATGATACTGTGACCTCACATGAAAGTGAAATTGGGTCTGGGTCCATCTCCACAGTTAGCTCAACAGTTAGTTCAGTAGAATCAGAGAAAGCAGCTTATGAATTCCTTGCTCAAACTCCTATCAAGTCAACCGATGCACACCTTGTTGAGTTTTCAGAAGCTATGAGAACTGTTGCAAAAGCATTGCGACGAGTTGCAGAAGGGAAAGCTGCTGCTCAAGCTGAGGCGGAAGAGTGGAGGCGTAAATATGAATTAGAGATGGCACACAAACAGCAGAGAAAAATCAAAGGCTATGGCAGTTGTGCCAATAATGAATTAGAAAAGTTGGCCAGCCAACTAACACTGGAGACGCCTGCATCTGATCAAGCGGGATGTTGTGGAAATCATGGTATATGTTCACATGAGGTTCTTCAGGATGAAAGTCCTGGTCCTAACCCCCGATCTAGTCACAAGCTGGTGAGTAGAAAGGCATCATTTAGACTTTCATGGGGATGCAATGGGGATAAAAACGGCCAGCACAAGCATGATTTTGTATCATTTGAAAAGGGAGATATAACAACAGCAGAGCGCAGCAACAAGCAGATTTTGCTGAAATGGGAATCCTCGCCACAAACTGTTCTTTTCATAACCAAACCTAATTCTAACTCCGTGCATGTTCTTTGTGCTGAAATGGTCAGATGGCTTAAGGAACATAAAAAGATAAATGTTGTTGTAGAGCCACGTGTTAGCAAGGAACTCTTAACAGAAGATTCCTACTACAATTTCATCCAAACATGGGATGATGATGAGGAGAAAAAGATGTTGCACACAAAGGTTGATCTCATTGTAACTCTTGGTGGTGATGGGACTGTTTTATGGGCTGCGTCTTTGTTCAAAGGGCCAGTTCCTCCGGTTGTTGCTTTCTCCCTAGGATCACTGGGATTCATGACACCTTTCCCAAGTGAGCAATATCGTGATTGTCTGGACAATGTGCTGAATGGACCATTTAGCATCACATTGAGAAACCGTCTACAGTGCCATGTAATCCGTGATGCAGCAAAGGATGAACTTGAGACTGAGGAGCCAATTTTAGTGTTAAACGAAGTCACAATTGACCGTGGAATATCATCTTACCTTACCTACTTGGAATGCTACTGTGATAGTTCTTTCGTTACATGTGTACAAGGGGATGGACTGATCATATCAACAACATCTGGAAGCACGGCATATTCATTGGCAGCTGGAGGATCCATGGTTCATCCACAGGTCCCAGGAATCCTATTCACGCCGATCTGCCCGCATTCCCTGTCATTCAGGCCTTTGATACTGCCTGAATATGTGACCCTGCGCGTACAAGTGCCACATAACAGCAGGGGCCAAGCTTGGGCATCATTCGATGGCAAAGATCGGAAGCTGCTGTCACCCGGGGATGCTCTCATCTGCAGCATTTCTCCATGGCCTGTGCCCACGGCTTGCCTGGTGGATTCAACAACCGATTTCCTACGCAGCATCCACGAGGGTCTCCACTGGAACCTGAGGAAGTCCCAGTCATTCGACGGCCCGCGTGATTGA
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| Protein seq | MSLDELPHKVSDERVNHDTVTSHESEIGSGSISTVSSTVSSVESEKAAYEFLAQTPIKSTDAHLVEFSEAMRTVAKALRRVAEGKAAAQAEAEEWRRKYELEMAHKQQRKIKGYGSCANNELEKLASQLTLETPASDQAGCCGNHGICSHEVLQDESPGPNPRSSHKLVSRKASFRLSWGCNGDKNGQHKHDFVSFEKGDITTAERSNKQILLKWESSPQTVLFITKPNSNSVHVLCAEMVRWLKEHKKINVVVEPRVSKELLTEDSYYNFIQTWDDDEEKKMLHTKVDLIVTLGGDGTVLWAASLFKGPVPPVVAFSLGSLGFMTPFPSEQYRDCLDNVLNGPFSITLRNRLQCHVIRDAAKDELETEEPILVLNEVTIDRGISSYLTYLECYCDSSFVTCVQGDGLIISTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPHNSRGQAWASFDGKDRKLLSPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPRD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0957000 | OsNip_01t0957000-02 | Chr01 | 42179962 | 42183719 | + | RAP2018-11-26 | ||
| CDS seq | CGTAAATATGAATTAGAGATGGCACACAAACAGCAGAGAAAAATCAAAGGCTATGGCAGTTGTGCCAATAATGAATTAGAAAAGTTGGCCAGCCAACTAACACTGGAGACGCCTGCATCTGATCAAGCGGGATGTTGTGGAAATCATGGTATATGTTCACATGAGGTTCTTCAGGATGAAAGTCCTGGTCCTAACCCCCGATCTAGTCACAAGCTGGTGAGTAGAAAGGCATCATTTAGACTTTCATGGGGATGCAATGGGGATAAAAACGGCCAGCACAAGCATGATTTTGTATCATTTGAAAAGGGAGATATAACAACAGCAGAGCGCAGCAACAAGCAGATTTTGCTGAAATGGGAATCCTCGCCACAAACTGTTCTTTTCATAACCAAACCTAATTCTAACTCCGTGCATGTTCTTTGTGCTGAAATGGTCAGATGGCTTAAGGAACATAAAAAGATAAATGTTGTTGTAGAGCCACGTGTTAGCAAGGAACTCTTAACAGAAGATTCCTACTACAATTTCATCCAAACATGGGATGATGATGAGGAGAAAAAGATGTTGCACACAAAGGTTGATCTCATTGTAACTCTTGGTGGTGATGGGACTGTTTTATGGGCTGCGTCTTTGTTCAAAGGGCCAGTTCCTCCGGTTGTTGCTTTCTCCCTAGGATCACTGGGATTCATGACACCTTTCCCAAGTGAGCAATATCGTGATTGTCTGGACAATGTGCTGAATGGACCATTTAGCATCACATTGAGAAACCGTCTACAGTGCCATGTAATCCGTGATGCAGCAAAGGATGAACTTGAGACTGAGGAGCCAATTTTAGTGTTAAACGAAGTCACAATTGACCGTGGAATATCATCTTACCTTACCTACTTGGAATGCTACTGTGATAGTTCTTTCGTTACATGTGTACAAGGGGATGGACTGATCATATCAACAACATCTGGAAGCACGGCATATTCATTGGCAGCTGGAGGATCCATGGTTCATCCACAGGTCCCAGGAATCCTATTCACGCCGATCTGCCCGCATTCCCTGTCATTCAGGCCTTTGATACTGCCTGAATATGTGACCCTGCGCGTACAAGTGCCACATAACAGCAGGGGCCAAGCTTGGGCATCATTCGATGGCAAAGATCGGAAGCTGCTGTCACCCGGGGATGCTCTCATCTGCAGCATTTCTCCATGGCCTGTGCCCACGGCTTGCCTGGTGGATTCAACAACCGATTTCCTACGCAGCATCCACGAGGGTCTCCACTGGAACCTGAGGAAGTCCCAGTCATTCGACGGCCCGCGTGATTGA
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| Protein seq | RKYELEMAHKQQRKIKGYGSCANNELEKLASQLTLETPASDQAGCCGNHGICSHEVLQDESPGPNPRSSHKLVSRKASFRLSWGCNGDKNGQHKHDFVSFEKGDITTAERSNKQILLKWESSPQTVLFITKPNSNSVHVLCAEMVRWLKEHKKINVVVEPRVSKELLTEDSYYNFIQTWDDDEEKKMLHTKVDLIVTLGGDGTVLWAASLFKGPVPPVVAFSLGSLGFMTPFPSEQYRDCLDNVLNGPFSITLRNRLQCHVIRDAAKDELETEEPILVLNEVTIDRGISSYLTYLECYCDSSFVTCVQGDGLIISTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPHNSRGQAWASFDGKDRKLLSPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPRD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0957000 | OsNip_01t0957000-03 | Chr01 | 42177838 | 42183724 | + | IsoSeq | ||
| CDS seq | TGCTCCTCCTCCTCAACAGCGTCGCCTCGCGTCGGCGTCGCCTCTCACCACCCAACCACCAGTCCACCACCCACCTCTCTCCCTCCCCTCCCCTCCCCAAACCCAACCCGAGCCGAGGCCGGAATTTCCTTTTTGGTGCGACGACGACGAGGTGAGGGTGAGCCAACCGCCGGATCGCGCCGCCATGTCGCTCGACGAGCTTCCGCACAAGAAGCTGGCATCCTCGGAGGGAATTCGGTTCGCGCGGTCGGATTCCAGGTTCCGGAG
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| Protein seq | CSSSSTASPRVGVASHHPTTSPPPTSLPPLPSPNPTRAEAGISFLVRRRRGEGEPTAGSRRHVARRASAQEAGILGGNSVRAVGFQVPE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 42178050 | 42179572 | + | OsNip_01t0957000-03 | OsNip_01t0957000-03,OsNip_01t0957000-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.468987 | 1.973778 | 6.256955 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0388400 | RBH | 3.180142 | 3.693697 | 2.337466 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72690 | RBH | 1.327778 | 1.322415 | 1.574384 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0957000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047560 | SBH | 1.283925 | 27.468782 | 11.931639 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0047040 | RBH | 0.602674 | 3.391258 | 2.050633 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047520 | SBH | 1.377969 | 23.687788 | 11.968604 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046920 | RBH | 0.213668 | 0.775251 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046450 | SBH | 7.172562 | 41.338669 | 26.521933 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045960 | SBH | 0.365129 | 2.785048 | 1.725320 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0692900 | RBH | 13.527617 | 24.7889065 | 13.109211 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046550 | SBH | 0.486148 | 0.093786 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046380 | SBH | 0.754905 | 13.362082 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046710 | RBH | 2.300379 | 17.783785 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046700 | RBH | 0.761128 | 2.144010 | 2.547829 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046470 | RBH | 0.529817 | 11.992168 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046730 | RBH | 0.248188 | 8.057961 | 6.325088 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046520 | SBH | 1.482597 | 11.106987 | 8.855438 |
