Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0953400 | OGI:01123130 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:41997484-42000340 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCTGCCTCAACCTCAAGCCAATCGCGCTCACGCTGGGAGCAGACCGGTCGCCGGTGGCGGTATCAGGGAGTAACGTGTTCCGACGAGGGGCGGCTAGCCGGCTATACTGGTAAGCCCCAATCTATAGCCTTAGGGCAGCCACTGAGCCACCCGGGCGGCGGTGAATTTCCCTTTGCTTTTTATGTATTTCTGCAATTGACGGTGCGCTGCTACAGTTTCCTCTCGAAATCTCGATCCATCCGTATGAAGCAGGGAGCATAACGAGCCCTGCCGGCGGGGGGCGAACGACATCGAGGGACGCTTAGCCGCTCGGAGGGCGGTGGATTTTGTTCTCTGGTAGGTATCGTCAGTTCGTCACTATCTCTGAAGCGGTGATACTGTGTACGAATAGATTGTGTTCGATCAGCATGTCAACGTGGTCGGGTGCTGCATCAATGCCTCTCCGTTCAGCAGCGGGAGTGTTCAGTGCTGCCGACAACAGATTGAAGGAGATTGATACCTTGGTAGGGGAGATCCAGATGGATTTTCGGAGCTTACATACGCCTAACTGTGTGTTCAATGGGGAAGAAATAGAGGATGACGACGATGTCGTTGATCCAGAATACCTCGAGATTATGACACTCGCCGGGCAGATCAGATGTGGAGTTCGGGAACTTCAGACTGCTCTAGACCGTAAGCGTATCTACGATAGCAGCTACGGTGATGAGGACAGATCAATGGAGGAAACTCAGGGGCAAGCATGTTGGTTCCCTTCTGCCTCGCAGCTGGAGCTTGTCATTCACTCACTAGATGCTCAGTTGAGGCACTGCCTCCTCTGCCTTGCAATGTTCCCGGCTGATGAGCTCATCAAGAAGAAGATGCTCATCCACTACTGGATTGGCGAGGGGATCGTCCAGTCCGTTACTGCTGGGAAGGACTGCTTTACGGATCTCCTCTCCAGAGGCCTGATACAGCCTGCTTGCCAGCGACAACACTGCAGCAAGGTGCACTACTGCAAGATTCCCCCCATTGTTAGCAACTTTCTTGTTAAGACGGCACATCGCATGGGGTTCTATCAGTTTGATGGTGAAGGCAAACCTATGGAGGATTTTGACAGCGAGAGGTCCCGCCGTGCATGTCTCTGGGAAAGGCAGATCGGTGGAAGAGGCGATGATGTCAATGAACTCTATGGGCCGTCTAGCTGCAAGGATCTGCTCACACTTTACAACTTCAACCGGCAGTATGTCAACATGGATAAGACTTGGTTGTCTAAACAAGCAGAGATGAGCACTCTCCAGCTCGGGCAGTGGAAGCCGTCATGGAGACACCGCATTGAAATTGTGAGCCCCGAGACCCTGGAGGCGGCAACCATGTGCGAGAGCCTAAAGTACCTCAGCCTCCGAGGCATCTCTCTCATTGAGTATATCCCAGACTCTATCGGCAATCTCCAGAATCTCGTGGTGATGGACCTCAGTGCGTGCCACAACTTGGAGAAGTTGTCAGATTCTATCGGCTCACTTCGCAAGCTGCAGTTTTTGGATGTTTCGGAGTGCTATCTCCTGGATGAAATGCCTGAAGGGATAGGAAGCCTGGAGGAACTCCAGGTTCTGAAGGGTTTTCTTGTGGGTGGCGCCACCAGCAAAAGTAACCCATGTCGTCTAGCAGATCTAGCTAGCTTGCCCAAGCTGAGGAAGCTGAGCATTAGCACTGGGCGGCGAGCATTAGTGGTACAGGAAGATGAGCTGAACAAATTGCAAGGGTGCACAGCCCTTGAGTCCTTGACTATAACATGGGGAGCAGCAGCAGCTGCACAAGGGCCGAAGCGTCAACTGATATCTGGTGTTGAAGGAAGCATCAAAGGAACCTCCATGGGATCAGAGCTGTTGCTTCCTCCAAGACTTGAGAAGCTGGACCTGCGGCGCACCCCCATGGAGAACTTGATGCATTTGCTTCATCCAGGAAATGCTGAGAACTTGAAGAGACTGTATATTCGAGGAGGGAAGCTGAAGAGCTTTGGTGATGTGGAAGGTTGGAATGTCGAGACGCTTCGTGTGAGGTTCCTGAAAGTCTTGGAGTGTGATTGGGAGCGACTCAGAGCTTCATTTGGCAAGCTACGTTTTCTGGAGATGCGTGAATGTCCCAATCTAACTTCATGGGAATGCGACGGCGAAGGTGTTTGGAGGGAGGACGATGACAATGGTACCACGCATGTAGGTTGCTTCGACAAATAGCTAGCTAGATTATAGGCAGATAATGGAGGACGAAGCAATTCGGTGCTGTTCGACATGTGCCGGCGCTCGGCTGGCAGAGCAGCTGCAGTAGCTTGAATGGCGGAAGCGGTGGCGGCTGGTCGGGGTGTGGGGTGTTGATGCTGTGCTACGCCGCCGGCAAGTGCAGGGGCAACTTCCACGCCAAGCAGCTGAGCCAGCGCGGCGAGCTGCTCACCGTGGTGTGGCTGCTCGTGGCGCACTTCGGCATGGGTAACCAGTACAGAGTTGAGGCCGGCCACGCCCGCGCCAAGCTCATCACCGAGAACTAGCCTCCTATTGCCGCCGGCACATAACAGCTGAGCATTTCAGAATTCAGATCAGTTCAGACTAAGTTTTTAAAAAATCTCTTTTGTTACTGAAGTTAAAAAGCTTTAGGTTTTGACTTGACTATTGAAGATTTATAACTGTTTAACACTCTTGCGGAGATAAATCCGCGTCAATATGTAAAGATAGCTTTCTTAGTGCCTTTCATAATAGTGATCAAGCTACTTTCTGTAATACAGTTTTCAGTATGTGCAAGCTGTTTTCTGTGGTGCAATTTCCTCTGTTACTGTTAGTCCAAGTCCATATCAGCAAAATGAATAACAAAGAAGCAGATGTTAGCATC
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| CDS seq | ATGTCAACGTGGTCGGGTGCTGCATCAATGCCTCTCCGTTCAGCAGCGGGAGTGTTCAGTGCTGCCGACAACAGATTGAAGGAGATTGATACCTTGGTAGGGGAGATCCAGATGGATTTTCGGAGCTTACATACGCCTAACTGTGTGTTCAATGGGGAAGAAATAGAGGATGACGACGATGTCGTTGATCCAGAATACCTCGAGATTATGACACTCGCCGGGCAGATCAGATGTGGAGTTCGGGAACTTCAGACTGCTCTAGACCGTAAGCGTATCTACGATAGCAGCTACGGTGATGAGGACAGATCAATGGAGGAAACTCAGGGGCAAGCATGTTGGTTCCCTTCTGCCTCGCAGCTGGAGCTTGTCATTCACTCACTAGATGCTCAGTTGAGGCACTGCCTCCTCTGCCTTGCAATGTTCCCGGCTGATGAGCTCATCAAGAAGAAGATGCTCATCCACTACTGGATTGGCGAGGGGATCGTCCAGTCCGTTACTGCTGGGAAGGACTGCTTTACGGATCTCCTCTCCAGAGGCCTGATACAGCCTGCTTGCCAGCGACAACACTGCAGCAAGGTGCACTACTGCAAGATTCCCCCCATTGTTAGCAACTTTCTTGTTAAGACGGCACATCGCATGGGGTTCTATCAGTTTGATGGTGAAGGCAAACCTATGGAGGATTTTGACAGCGAGAGGTCCCGCCGTGCATGTCTCTGGGAAAGGCAGATCGGTGGAAGAGGCGATGATGTCAATGAACTCTATGGGCCGTCTAGCTGCAAGGATCTGCTCACACTTTACAACTTCAACCGGCAGTATGTCAACATGGATAAGACTTGGTTGTCTAAACAAGCAGAGATGAGCACTCTCCAGCTCGGGCAGTGGAAGCCGTCATGGAGACACCGCATTGAAATTGTGAGCCCCGAGACCCTGGAGGCGGCAACCATGTGCGAGAGCCTAAAGTACCTCAGCCTCCGAGGCATCTCTCTCATTGAGTATATCCCAGACTCTATCGGCAATCTCCAGAATCTCGTGGTGATGGACCTCAGTGCGTGCCACAACTTGGAGAAGTTGTCAGATTCTATCGGCTCACTTCGCAAGCTGCAGTTTTTGGATGTTTCGGAGTGCTATCTCCTGGATGAAATGCCTGAAGGGATAGGAAGCCTGGAGGAACTCCAGGTTCTGAAGGGTTTTCTTGTGGGTGGCGCCACCAGCAAAAGTAACCCATGTCGTCTAGCAGATCTAGCTAGCTTGCCCAAGCTGAGGAAGCTGAGCATTAGCACTGGGCGGCGAGCATTAGTGGTACAGGAAGATGAGCTGAACAAATTGCAAGGGTGCACAGCCCTTGAGTCCTTGACTATAACATGGGGAGCAGCAGCAGCTGCACAAGGGCCGAAGCGTCAACTGATATCTGGTGTTGAAGGAAGCATCAAAGGAACCTCCATGGGATCAGAGCTGTTGCTTCCTCCAAGACTTGAGAAGCTGGACCTGCGGCGCACCCCCATGGAGAACTTGATGCATTTGCTTCATCCAGGAAATGCTGAGAACTTGAAGAGACTGTATATTCGAGGAGGGAAGCTGAAGAGCTTTGGTGATGTGGAAGGTTGGAATGTCGAGACGCTTCGTGTGAGGTTCCTGAAAGTCTTGGAGTGTGATTGGGAGCGACTCAGAGCTTCATTTGGCAAGCTACGTTTTCTGGAGATGCGTGAATGTCCCAATCTAACTTCATGGGAATGCGACGGCGAAGGTGTTTGGAGGGAGGACGATGACAATGGTACCACGCATGTAGGTTGCTTCGACAAATAG
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| Protein seq | MSTWSGAASMPLRSAAGVFSAADNRLKEIDTLVGEIQMDFRSLHTPNCVFNGEEIEDDDDVVDPEYLEIMTLAGQIRCGVRELQTALDRKRIYDSSYGDEDRSMEETQGQACWFPSASQLELVIHSLDAQLRHCLLCLAMFPADELIKKKMLIHYWIGEGIVQSVTAGKDCFTDLLSRGLIQPACQRQHCSKVHYCKIPPIVSNFLVKTAHRMGFYQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKDLLTLYNFNRQYVNMDKTWLSKQAEMSTLQLGQWKPSWRHRIEIVSPETLEAATMCESLKYLSLRGISLIEYIPDSIGNLQNLVVMDLSACHNLEKLSDSIGSLRKLQFLDVSECYLLDEMPEGIGSLEELQVLKGFLVGGATSKSNPCRLADLASLPKLRKLSISTGRRALVVQEDELNKLQGCTALESLTITWGAAAAAQGPKRQLISGVEGSIKGTSMGSELLLPPRLEKLDLRRTPMENLMHLLHPGNAENLKRLYIRGGKLKSFGDVEGWNVETLRVRFLKVLECDWERLRASFGKLRFLEMRECPNLTSWECDGEGVWREDDDNGTTHVGCFDK |
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| Function | Disease resistance RPP13-like protein 4 [UniProtKB/Swiss-Prot:Q38834] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0953400 | OsNip_01t0953400-01 | Chr01 | 41997484 | 42000340 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCAACGTGGTCGGGTGCTGCATCAATGCCTCTCCGTTCAGCAGCGGGAGTGTTCAGTGCTGCCGACAACAGATTGAAGGAGATTGATACCTTGGTAGGGGAGATCCAGATGGATTTTCGGAGCTTACATACGCCTAACTGTGTGTTCAATGGGGAAGAAATAGAGGATGACGACGATGTCGTTGATCCAGAATACCTCGAGATTATGACACTCGCCGGGCAGATCAGATGTGGAGTTCGGGAACTTCAGACTGCTCTAGACCGTAAGCGTATCTACGATAGCAGCTACGGTGATGAGGACAGATCAATGGAGGAAACTCAGGGGCAAGCATGTTGGTTCCCTTCTGCCTCGCAGCTGGAGCTTGTCATTCACTCACTAGATGCTCAGTTGAGGCACTGCCTCCTCTGCCTTGCAATGTTCCCGGCTGATGAGCTCATCAAGAAGAAGATGCTCATCCACTACTGGATTGGCGAGGGGATCGTCCAGTCCGTTACTGCTGGGAAGGACTGCTTTACGGATCTCCTCTCCAGAGGCCTGATACAGCCTGCTTGCCAGCGACAACACTGCAGCAAGGTGCACTACTGCAAGATTCCCCCCATTGTTAGCAACTTTCTTGTTAAGACGGCACATCGCATGGGGTTCTATCAGTTTGATGGTGAAGGCAAACCTATGGAGGATTTTGACAGCGAGAGGTCCCGCCGTGCATGTCTCTGGGAAAGGCAGATCGGTGGAAGAGGCGATGATGTCAATGAACTCTATGGGCCGTCTAGCTGCAAGGATCTGCTCACACTTTACAACTTCAACCGGCAGTATGTCAACATGGATAAGACTTGGTTGTCTAAACAAGCAGAGATGAGCACTCTCCAGCTCGGGCAGTGGAAGCCGTCATGGAGACACCGCATTGAAATTGTGAGCCCCGAGACCCTGGAGGCGGCAACCATGTGCGAGAGCCTAAAGTACCTCAGCCTCCGAGGCATCTCTCTCATTGAGTATATCCCAGACTCTATCGGCAATCTCCAGAATCTCGTGGTGATGGACCTCAGTGCGTGCCACAACTTGGAGAAGTTGTCAGATTCTATCGGCTCACTTCGCAAGCTGCAGTTTTTGGATGTTTCGGAGTGCTATCTCCTGGATGAAATGCCTGAAGGGATAGGAAGCCTGGAGGAACTCCAGGTTCTGAAGGGTTTTCTTGTGGGTGGCGCCACCAGCAAAAGTAACCCATGTCGTCTAGCAGATCTAGCTAGCTTGCCCAAGCTGAGGAAGCTGAGCATTAGCACTGGGCGGCGAGCATTAGTGGTACAGGAAGATGAGCTGAACAAATTGCAAGGGTGCACAGCCCTTGAGTCCTTGACTATAACATGGGGAGCAGCAGCAGCTGCACAAGGGCCGAAGCGTCAACTGATATCTGGTGTTGAAGGAAGCATCAAAGGAACCTCCATGGGATCAGAGCTGTTGCTTCCTCCAAGACTTGAGAAGCTGGACCTGCGGCGCACCCCCATGGAGAACTTGATGCATTTGCTTCATCCAGGAAATGCTGAGAACTTGAAGAGACTGTATATTCGAGGAGGGAAGCTGAAGAGCTTTGGTGATGTGGAAGGTTGGAATGTCGAGACGCTTCGTGTGAGGTTCCTGAAAGTCTTGGAGTGTGATTGGGAGCGACTCAGAGCTTCATTTGGCAAGCTACGTTTTCTGGAGATGCGTGAATGTCCCAATCTAACTTCATGGGAATGCGACGGCGAAGGTGTTTGGAGGGAGGACGATGACAATGGTACCACGCATGTAGGTTGCTTCGACAAATAG
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| Protein seq | MSTWSGAASMPLRSAAGVFSAADNRLKEIDTLVGEIQMDFRSLHTPNCVFNGEEIEDDDDVVDPEYLEIMTLAGQIRCGVRELQTALDRKRIYDSSYGDEDRSMEETQGQACWFPSASQLELVIHSLDAQLRHCLLCLAMFPADELIKKKMLIHYWIGEGIVQSVTAGKDCFTDLLSRGLIQPACQRQHCSKVHYCKIPPIVSNFLVKTAHRMGFYQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKDLLTLYNFNRQYVNMDKTWLSKQAEMSTLQLGQWKPSWRHRIEIVSPETLEAATMCESLKYLSLRGISLIEYIPDSIGNLQNLVVMDLSACHNLEKLSDSIGSLRKLQFLDVSECYLLDEMPEGIGSLEELQVLKGFLVGGATSKSNPCRLADLASLPKLRKLSISTGRRALVVQEDELNKLQGCTALESLTITWGAAAAAQGPKRQLISGVEGSIKGTSMGSELLLPPRLEKLDLRRTPMENLMHLLHPGNAENLKRLYIRGGKLKSFGDVEGWNVETLRVRFLKVLECDWERLRASFGKLRFLEMRECPNLTSWECDGEGVWREDDDNGTTHVGCFDK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.177495 | 0.338894 | 0.649291 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0380300 | SBH | 0.156068 | 0.080026 | 0.317876 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72410 | RBH | 0.113971 | 0.354557 | 0.139123 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0953400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047320 | RBH | 0.322978 | 0.889303 | 1.863010 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046850 | RBH | 0.151624 | 0.000000 | 0.820429 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047280 | RBH | 0.286396 | 4.440312 | 3.145811 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046690 | RBH | 0.000000 | 0.060037 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046210 | RBH | 0.312210 | 3.859418 | 3.863094 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0687500 | RBH | 0.500603 | 0.8133145 | 5.975979 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045720 | RBH | 0.050976 | 0.134467 | 0.291689 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0689700 | RBH | 0.568144 | 0.3698205 | 7.560235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046310 | RBH | 0.000000 | 0.108276 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035710 | SBH | 0.0 | 3.285079 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046470 | RBH | 3.089939 | 4.585419 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046440 | RBH | 0.253892 | 0.0 | 0.158546 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046230 | RBH | 0.163501 | 2.188213 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046490 | RBH | 0.053310 | 0.000000 | 0.363560 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046310 | RBH | 0.251055 | 4.176490 | 2.588464 |
