Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0940800 | OGI:01121760 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:41349731-41351118 | ||||||||
| Gene Symbol | GNS6, Gns6, OsGns6 | ||||||||||
| DNA seq | ACTTGCAGCAGCTGCAAAATAAGCGAAGATGACTACGCAAGGATTTGCTCCCGTGCTTGCAGTAGCATTGCTCCTTGCAGCATTTCCTGCAGGTATACTGCAGCATATAGTACATGCATGTTATTCAGCAGCGTGCGAGTACAGAGCATGTGTGCTCCACATAATAATTAAGTGTACTAATTAACTAACTCTTGGTTCATGTTACATGTACGCTTGCTCTGTTGACAAATTAACAGCGGTTCAGTCCATTGGCGTGTGCTACGGCGTGATCGGCAACAACCTGCCGGCGGCGAGCGACGTCGTGAAGCTCTACAAGTCCAAGGGGATCGACTCCATGCGCATCTACTTCCCGAGGAGCGACATCCTCCAGGCACTCACCGGCTCGAACATCGCCCTCACCATGGACGTCGCCAACGAGAACCTCGCCGCGTTCGCCGCCGACGCCACCGCCGCGGCCGCCTGGGTCAAGCAGAACGTCCAGGCCTACCCGGGCGTCTCCTTCCGCTACATCGCCGTCGGCAACGAGGTCACCGGCGACGACACGGGCAACATCCTCCCGGCCATGAAGAACCTCAACGCCGCGCTCGCCGCGGCCGGCCTCGGCGGCGTCGGGGTGTCGACGTCGGTGTCCCAGGGCGTGATCGCCAACTCCTACCCGCCTTCCAACGGCGTCTTCAACGACGACTACATGTTTGACATCGTGGAGTACCTGGCGAGCACCGGAGCGCCGCTGCTGGTTAACGTGTACCCCTACTTCGCCTACGTCGGCGACACGAAAGACATCAGCCTCAACTACGCCACGTTCCAGCCGGGCACGACGGTGACGGACGACGGCAGCGGGCTGATCTACACGAGCCTCTTCGACGCGATGGTGGATTCCGTCTACGCCGCGCTGGAGGACGCCGGCGCGCCGGACGTCGGCGTGGTGGTGTCGGAGACCGGGTGGCCGTCGGCCGGTGGGTTCGGGGCCAGCGTGAGCAACGCGCAGACGTACAACCAGAAGCTTATCAGCCATGTCCAAGGAGGCACTCCGAAGAGACCAGGGGTGGCGTTGGAGACGTACGTGTTCGCCATGTTCAACGAGAACCAGAAGACCGGGGCTGAGACCGAGAGGCACTTCGGGCTGTTCAACCCCAACAAGTCGCCGTCCTACAAAATTAGATTCCACTAGACAAGAGTGATATACTAATATTACATTTGGATTTGGAATAAGCTAGCTGCTCATGTCAAATGCAAAACCGCATGCATGCATGGGAACGTACGGCCAGCATATAGTTTTGTGGTAATAAGCACAGCTGCTCAAGATTCAGCAACGTACGTGTAACTCTGCCTTGGCACTTTGGCAGTGAATACTGAACAATAACGGAATTTATAACTCTGTTTCCTTG
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| CDS seq | ATGACTACGCAAGGATTTGCTCCCGTGCTTGCAGTAGCATTGCTCCTTGCAGCATTTCCTGCAGCGGTTCAGTCCATTGGCGTGTGCTACGGCGTGATCGGCAACAACCTGCCGGCGGCGAGCGACGTCGTGAAGCTCTACAAGTCCAAGGGGATCGACTCCATGCGCATCTACTTCCCGAGGAGCGACATCCTCCAGGCACTCACCGGCTCGAACATCGCCCTCACCATGGACGTCGCCAACGAGAACCTCGCCGCGTTCGCCGCCGACGCCACCGCCGCGGCCGCCTGGGTCAAGCAGAACGTCCAGGCCTACCCGGGCGTCTCCTTCCGCTACATCGCCGTCGGCAACGAGGTCACCGGCGACGACACGGGCAACATCCTCCCGGCCATGAAGAACCTCAACGCCGCGCTCGCCGCGGCCGGCCTCGGCGGCGTCGGGGTGTCGACGTCGGTGTCCCAGGGCGTGATCGCCAACTCCTACCCGCCTTCCAACGGCGTCTTCAACGACGACTACATGTTTGACATCGTGGAGTACCTGGCGAGCACCGGAGCGCCGCTGCTGGTTAACGTGTACCCCTACTTCGCCTACGTCGGCGACACGAAAGACATCAGCCTCAACTACGCCACGTTCCAGCCGGGCACGACGGTGACGGACGACGGCAGCGGGCTGATCTACACGAGCCTCTTCGACGCGATGGTGGATTCCGTCTACGCCGCGCTGGAGGACGCCGGCGCGCCGGACGTCGGCGTGGTGGTGTCGGAGACCGGGTGGCCGTCGGCCGGTGGGTTCGGGGCCAGCGTGAGCAACGCGCAGACGTACAACCAGAAGCTTATCAGCCATGTCCAAGGAGGCACTCCGAAGAGACCAGGGGTGGCGTTGGAGACGTACGTGTTCGCCATGTTCAACGAGAACCAGAAGACCGGGGCTGAGACCGAGAGGCACTTCGGGCTGTTCAACCCCAACAAGTCGCCGTCCTACAAAATTAGATTCCACTAG
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| Protein seq | MTTQGFAPVLAVALLLAAFPAAVQSIGVCYGVIGNNLPAASDVVKLYKSKGIDSMRIYFPRSDILQALTGSNIALTMDVANENLAAFAADATAAAAWVKQNVQAYPGVSFRYIAVGNEVTGDDTGNILPAMKNLNAALAAAGLGGVGVSTSVSQGVIANSYPPSNGVFNDDYMFDIVEYLASTGAPLLVNVYPYFAYVGDTKDISLNYATFQPGTTVTDDGSGLIYTSLFDAMVDSVYAALEDAGAPDVGVVVSETGWPSAGGFGASVSNAQTYNQKLISHVQGGTPKRPGVALETYVFAMFNENQKTGAETERHFGLFNPNKSPSYKIRFH |
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| Function | Glucan endo-1,3-beta-glucosidase GII [UniProtKB/Swiss-Prot:P15737] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0940800 | OsNip_01t0940800-01 | Chr01 | 41349731 | 41351118 | + | RAP2018-11-26 | ||
| CDS seq | ATGACTACGCAAGGATTTGCTCCCGTGCTTGCAGTAGCATTGCTCCTTGCAGCATTTCCTGCAGCGGTTCAGTCCATTGGCGTGTGCTACGGCGTGATCGGCAACAACCTGCCGGCGGCGAGCGACGTCGTGAAGCTCTACAAGTCCAAGGGGATCGACTCCATGCGCATCTACTTCCCGAGGAGCGACATCCTCCAGGCACTCACCGGCTCGAACATCGCCCTCACCATGGACGTCGCCAACGAGAACCTCGCCGCGTTCGCCGCCGACGCCACCGCCGCGGCCGCCTGGGTCAAGCAGAACGTCCAGGCCTACCCGGGCGTCTCCTTCCGCTACATCGCCGTCGGCAACGAGGTCACCGGCGACGACACGGGCAACATCCTCCCGGCCATGAAGAACCTCAACGCCGCGCTCGCCGCGGCCGGCCTCGGCGGCGTCGGGGTGTCGACGTCGGTGTCCCAGGGCGTGATCGCCAACTCCTACCCGCCTTCCAACGGCGTCTTCAACGACGACTACATGTTTGACATCGTGGAGTACCTGGCGAGCACCGGAGCGCCGCTGCTGGTTAACGTGTACCCCTACTTCGCCTACGTCGGCGACACGAAAGACATCAGCCTCAACTACGCCACGTTCCAGCCGGGCACGACGGTGACGGACGACGGCAGCGGGCTGATCTACACGAGCCTCTTCGACGCGATGGTGGATTCCGTCTACGCCGCGCTGGAGGACGCCGGCGCGCCGGACGTCGGCGTGGTGGTGTCGGAGACCGGGTGGCCGTCGGCCGGTGGGTTCGGGGCCAGCGTGAGCAACGCGCAGACGTACAACCAGAAGCTTATCAGCCATGTCCAAGGAGGCACTCCGAAGAGACCAGGGGTGGCGTTGGAGACGTACGTGTTCGCCATGTTCAACGAGAACCAGAAGACCGGGGCTGAGACCGAGAGGCACTTCGGGCTGTTCAACCCCAACAAGTCGCCGTCCTACAAAATTAGATTCCACTAG
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| Protein seq | MTTQGFAPVLAVALLLAAFPAAVQSIGVCYGVIGNNLPAASDVVKLYKSKGIDSMRIYFPRSDILQALTGSNIALTMDVANENLAAFAADATAAAAWVKQNVQAYPGVSFRYIAVGNEVTGDDTGNILPAMKNLNAALAAAGLGGVGVSTSVSQGVIANSYPPSNGVFNDDYMFDIVEYLASTGAPLLVNVYPYFAYVGDTKDISLNYATFQPGTTVTDDGSGLIYTSLFDAMVDSVYAALEDAGAPDVGVVVSETGWPSAGGFGASVSNAQTYNQKLISHVQGGTPKRPGVALETYVFAMFNENQKTGAETERHFGLFNPNKSPSYKIRFH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.760707 | 1.607466 | 0.478087 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0375400 | SBH | 0.529882 | 0.467992 | 2.021434 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71350 | RBH | 0.502316 | 1.055696 | 0.120171 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0940800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046600 | RBH | 0.148534 | 24.620491 | 2.467817 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046110 | RBH | 0.0 | 0.0 | 0.500849 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046500 | RBH | 0.332659 | 9.656500 | 0.522985 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046340 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045610 | RBH | 0.826886 | 8.182694 | 4.462908 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0681200 | SBH | 3.643111 | 1.8056825 | 0.6814965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045150 | RBH | 0.0 | 1.116354 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0682300 | RBH | 1.9534105 | 169.281204 | 0.044626 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045650 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045540 | RBH | 0.0 | 15.502956 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045870 | RBH | 0.000000 | 39.520603 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045870 | RBH | 0.0 | 3.001481 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045610 | RBH | 0.093259 | 9.836069 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045930 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045650 | RBH | 0.0 | 72.895844 | 0.0 |
