Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0914600 | OGI:01118010 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:39849645-39851426 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATCAAATAGATGCTGCTATGTTAGATAAATTCCACAGCGTCAAGTAAATTTCCTCCTTGTGGGGATGTGAACTACCTCCATTCACAAACTCATGAATTTGTCCATCCACCTCAATCACACTCCGTCCAATGTTCTTTTTCATACCCTCAGCACTCATCAACTTCCTAATCCTGAAAACATCATCCCACATTCCTTCATCAGCATAGATATTGGACAGAAGAACATAGACTCCAGAGTCATCTGCTCCGAGACTGGCCAGACGCTCAACTGATAGCTCAGCCAGCTCCACACACCTATGGCTTCGGCAGGAAGCAAGAAGAGATCCCCATAATTCAGGAGTCGGTTCCATCGGCATTGTCTCTATTGTGTTTCTAGCCTGATCCACTCGTCCAGCACGGCCAAGGAGATCAATCAATGCACCATAATGTTCCACCTTAGGTTCTAGTCCTAAATCCTTCTCCATTCTGTAAAATATCCCCAAACCCTCTGAGACTAACCCAGCATGCGTGCAAGAAGTCAACACAGCAAGTATGCTAAGATCATCCATTGGTGCCCTTTCAGTTTCCATTTGGTTAAAAAGCTTGATGGCATCAAGTCCATAACCATGAGTTCCAAGTCCAACAATCATCACATTCCAAGTGACCACACTCTTCTTGGGCATGCTTTCAAAGATCAATTTGGCAAGATCCAAACGACCGCATTTCACGTACATATCTATCAAAGCTGTTTGCACCACAACATCGAACAACACCTTCTTCTTCTCCAAGTATGAGTGCAGCCACCTGCCTTGCTCCAGAGCTCCCAGCTGTGCACAAGCTGCAACAGCCCCAACTGCAGCTACTCTATCAGGCTTGATACCACATCTTAGCATCCTCTGGAAAAACTCCAAAGCTTCATTTGGCTCCCCGAATCTGACATAGCCATCGATGACAATACTCCATGAGATCACATTCCTCTCAGGCATCTCCTCGAACAGAACCCTCGCTTCATCCATTCTCCCATGCCTGGCATAACCATCAATCATGGAGTTCCAGCACACCAAATCCCTGTCAGGCATTTGATCAAACAACTCACGTGCACGATCTACACCACCTGCCATCTCTCCGTACCCATCGATCATGGTGGCCCAGGAGAACGCATCCCTCTGCCGCATTTCGTCGAACAAATCCTGCGCCAGATCCACCTCCCCACACCCAACGTACCCCGCCACCATAGAGTTCCAGGAGACGAGGTCCCGCACGCCGTGATCGAACACCTTCCTCCCGGAACGGCAGTCCCCGATCCTGCAGTAGAAGCTAATCAGCGCGTTCCTCGTGAACAGGTCGGCGTCCAACCCCGTCCTCACCGCCTCGCCGTGCACCACCAACCCCACCCTACACCCGGGCGCGCAGCCGCACGCCTTGAGCACGGCCGGGAACGTGTAGGCGTCGGGCGCCACGGCGGCTCGCCGCATGCGCGAGAAGTAGAGGAGGGATCTCCGCGGGCTCGCGGCGGCGTGGAGGCGGACGAGGGTGTTCCAGGGGAACGCGTGGCGGGAGGCTTCCTCCGCGAGGTGGGCGAAGACGGAGTCGGCGTGGTCGGCGGCGGAGGGGGAGGCGGAGGCGGAGGCGAGGGCGAGGAGGAGGAGGTTGGAGAGGCGGGCCGGGGAGGCGGCGAGGTGGCCGGAGGTGAGGAGGAGGGCGTGGCACTGGAGCGCGTGGGAGGCGGAGCTGCAGGCGCGGAGGCGGGAGAGGAGCGTGGCGAGGGCGTGAGGAGGACGACGACGAGACATGGCAAAGTTT
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| CDS seq | ATGTCTCGTCGTCGTCCTCCTCACGCCCTCGCCACGCTCCTCTCCCGCCTCCGCGCCTGCAGCTCCGCCTCCCACGCGCTCCAGTGCCACGCCCTCCTCCTCACCTCCGGCCACCTCGCCGCCTCCCCGGCCCGCCTCTCCAACCTCCTCCTCCTCGCCCTCGCCTCCGCCTCCGCCTCCCCCTCCGCCGCCGACCACGCCGACTCCGTCTTCGCCCACCTCGCGGAGGAAGCCTCCCGCCACGCGTTCCCCTGGAACACCCTCGTCCGCCTCCACGCCGCCGCGAGCCCGCGGAGATCCCTCCTCTACTTCTCGCGCATGCGGCGAGCCGCCGTGGCGCCCGACGCCTACACGTTCCCGGCCGTGCTCAAGGCGTGCGGCTGCGCGCCCGGGTGTAGGGTGGGGTTGGTGGTGCACGGCGAGGCGGTGAGGACGGGGTTGGACGCCGACCTGTTCACGAGGAACGCGCTGATTAGCTTCTACTGCAGGATCGGGGACTGCCGTTCCGGGAGGAAGGTGTTCGATCACGGCGTGCGGGACCTCGTCTCCTGGAACTCTATGGTGGCGGGGTACGTTGGGTGTGGGGAGGTGGATCTGGCGCAGGATTTGTTCGACGAAATGCGGCAGAGGGATGCGTTCTCCTGGGCCACCATGATCGATGGGTACGGAGAGATGGCAGGTGGTGTAGATCGTGCACGTGAGTTGTTTGATCAAATGCCTGACAGGGATTTGGTGTGCTGGAACTCCATGATTGATGGTTATGCCAGGCATGGGAGAATGGATGAAGCGAGGGTTCTGTTCGAGGAGATGCCTGAGAGGAATGTGATCTCATGGAGTATTGTCATCGATGGCTATGTCAGATTCGGGGAGCCAAATGAAGCTTTGGAGTTTTTCCAGAGGATGCTAAGATGTGGTATCAAGCCTGATAGAGTAGCTGCAGTTGGGGCTGTTGCAGCTTGTGCACAGCTGGGAGCTCTGGAGCAAGGCAGGTGGCTGCACTCATACTTGGAGAAGAAGAAGGTGTTGTTCGATGTTGTGGTGCAAACAGCTTTGATAGATATGTACGTGAAATGCGGTCGTTTGGATCTTGCCAAATTGATCTTTGAAAGCATGCCCAAGAAGAGTGTGGTCACTTGGAATGTGATGATTGTTGGACTTGGAACTCATGGTTATGGACTTGATGCCATCAAGCTTTTTAACCAAATGGAAACTGAAAGGGCACCAATGGATGATCTTAGCATACTTGCTGTGTTGACTTCTTGCACGCATGCTGGGTTAGTCTCAGAGGGTTTGGGGATATTTTACAGAATGGAGAAGGATTTAGGACTAGAACCTAAGGTGGAACATTATGGTGCATTGATTGATCTCCTTGGCCGTGCTGGACGAGTGGATCAGGCTAGAAACACAATAGAGACAATGCCGATGGAACCGACTCCTGAATTATGGGGATCTCTTCTTGCTTCCTGCCGAAGCCATAGGTGTGTGGAGCTGGCTGAGCTATCAGTTGAGCGTCTGGCCAGTCTCGGAGCAGATGACTCTGGAGTCTATGTTCTTCTGTCCAATATCTATGCTGATGAAGGAATGTGGGATGATGTTTTCAGGATTAGGAAGTTGATGAGTGCTGAGGGTATGAAAAAGAACATTGGACGGAGTGTGATTGAGGTGGATGGACAAATTCATGAGTTTGTGAATGGAGGTAGTTCACATCCCCACAAGGAGGAAATTTACTTGACGCTGTGGAATTTATCTAACATAGCAGCATCTATTTGA
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| Protein seq | MSRRRPPHALATLLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTLWNLSNIAASI |
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| Function | Pentatricopeptide repeat-containing protein At3g29230 [UniProtKB/Swiss-Prot:Q9LS72] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0914600 | OsNip_01t0914600-01 | Chr01 | 39849645 | 39851426 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCTCGTCGTCGTCCTCCTCACGCCCTCGCCACGCTCCTCTCCCGCCTCCGCGCCTGCAGCTCCGCCTCCCACGCGCTCCAGTGCCACGCCCTCCTCCTCACCTCCGGCCACCTCGCCGCCTCCCCGGCCCGCCTCTCCAACCTCCTCCTCCTCGCCCTCGCCTCCGCCTCCGCCTCCCCCTCCGCCGCCGACCACGCCGACTCCGTCTTCGCCCACCTCGCGGAGGAAGCCTCCCGCCACGCGTTCCCCTGGAACACCCTCGTCCGCCTCCACGCCGCCGCGAGCCCGCGGAGATCCCTCCTCTACTTCTCGCGCATGCGGCGAGCCGCCGTGGCGCCCGACGCCTACACGTTCCCGGCCGTGCTCAAGGCGTGCGGCTGCGCGCCCGGGTGTAGGGTGGGGTTGGTGGTGCACGGCGAGGCGGTGAGGACGGGGTTGGACGCCGACCTGTTCACGAGGAACGCGCTGATTAGCTTCTACTGCAGGATCGGGGACTGCCGTTCCGGGAGGAAGGTGTTCGATCACGGCGTGCGGGACCTCGTCTCCTGGAACTCTATGGTGGCGGGGTACGTTGGGTGTGGGGAGGTGGATCTGGCGCAGGATTTGTTCGACGAAATGCGGCAGAGGGATGCGTTCTCCTGGGCCACCATGATCGATGGGTACGGAGAGATGGCAGGTGGTGTAGATCGTGCACGTGAGTTGTTTGATCAAATGCCTGACAGGGATTTGGTGTGCTGGAACTCCATGATTGATGGTTATGCCAGGCATGGGAGAATGGATGAAGCGAGGGTTCTGTTCGAGGAGATGCCTGAGAGGAATGTGATCTCATGGAGTATTGTCATCGATGGCTATGTCAGATTCGGGGAGCCAAATGAAGCTTTGGAGTTTTTCCAGAGGATGCTAAGATGTGGTATCAAGCCTGATAGAGTAGCTGCAGTTGGGGCTGTTGCAGCTTGTGCACAGCTGGGAGCTCTGGAGCAAGGCAGGTGGCTGCACTCATACTTGGAGAAGAAGAAGGTGTTGTTCGATGTTGTGGTGCAAACAGCTTTGATAGATATGTACGTGAAATGCGGTCGTTTGGATCTTGCCAAATTGATCTTTGAAAGCATGCCCAAGAAGAGTGTGGTCACTTGGAATGTGATGATTGTTGGACTTGGAACTCATGGTTATGGACTTGATGCCATCAAGCTTTTTAACCAAATGGAAACTGAAAGGGCACCAATGGATGATCTTAGCATACTTGCTGTGTTGACTTCTTGCACGCATGCTGGGTTAGTCTCAGAGGGTTTGGGGATATTTTACAGAATGGAGAAGGATTTAGGACTAGAACCTAAGGTGGAACATTATGGTGCATTGATTGATCTCCTTGGCCGTGCTGGACGAGTGGATCAGGCTAGAAACACAATAGAGACAATGCCGATGGAACCGACTCCTGAATTATGGGGATCTCTTCTTGCTTCCTGCCGAAGCCATAGGTGTGTGGAGCTGGCTGAGCTATCAGTTGAGCGTCTGGCCAGTCTCGGAGCAGATGACTCTGGAGTCTATGTTCTTCTGTCCAATATCTATGCTGATGAAGGAATGTGGGATGATGTTTTCAGGATTAGGAAGTTGATGAGTGCTGAGGGTATGAAAAAGAACATTGGACGGAGTGTGATTGAGGTGGATGGACAAATTCATGAGTTTGTGAATGGAGGTAGTTCACATCCCCACAAGGAGGAAATTTACTTGACGCTGTGGAATTTATCTAACATAGCAGCATCTATTTGA
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| Protein seq | MSRRRPPHALATLLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTLWNLSNIAASI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.333577 | 0.716285 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0913400 | RBH | 0.366359 | 0.472847 | 0.442139 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68610 | RBH | 0.0 | 0.224359 | 0.184386 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0914600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044700 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0044250 | RBH | 0.072091 | 0.603484 | 0.358071 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044620 | RBH | 0.0 | 0.0 | 1.285653 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0044080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043640 | RBH | 0.0 | 0.0 | 0.716488 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0657700 | RBH | 0.5995285 | 1.272635 | 0.7857065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0043280 | RBH | 0.0 | 0.270029 | 0.069161 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0659600 | RBH | 0.624653 | 1.3853605 | 5.405795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0043620 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043580 | RBH | 0.102358 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0043830 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043640 | RBH | 0.0 | 0.260244 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G044000 | RBH | 0.000000 | 0.281109 | 0.112150 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043740 | RBH | 0.266694 | 3.768213 | 0.440470 |
