Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0909150 | OGI:01117230 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:39592613-39595176 | ||||||||
| Gene Symbol | HDT2, OsHDT2, HDT702 | ||||||||||
| DNA seq | CTGCCTATTAGAGGATCATCTTTGAAGCAAAAGCAGCTGCAGTCAAACATGCCACCAGTAGTTCACTTGGCTGGATGTCTTGCCTTCTGATGAGACCGGAGTGATTTATCACTACTAAATGCCCTGTGAGAGAAAAGAACCATCTAATGTTAGAATGCTTGTGATAAGACTGCATCTTATCACAGCATAATAATAAACTGCCAAGCTGTATACATACTTGCTGCAATACTTGCAGGCATGGGTGCCGGAGGATTCGGGAGTCTCCTTATTTGGTTTGCTGATTGCCGGCGTCTTGCCATCTTCCTTTGCTGGATGAGTATTCTTATCACCTTTAGTAAATGCGAAAAATTAGCTAAAGTTGAGTCCCCTGTGTGTTGCAAGGTTAATAAAAATAGCGTCAGTCCGGCAGAGCTAACCTGTTTTCTGGCCAAAGTGTGTTGCAGTCTTTGACTTCTTACCAGAAGAAAGTGTAGATCCAGCAGCTGTCAGCTTGCTGCTCTCAGGCTGCCGAGCACAAAACAAGAGTCAGATCGCATCTTAGAGACAAATCAAGAGTCAGATCGCATCTTAGAGACAAATCAAGAACAGTGGCAGATATCGGGCATACTTTCTCTGGAATTTCATCTTCCTCATCACTTTCATCCTCTTCATCAGTGGACACCATCGATGAAGATGATTCATCCTGCCCATCACTCCCATCCTCTTCTTCACTGGACTCCATTTCTGCTGGTAACTCATCAGATCCATCATCCTCATCACCTGACTCATCCTTAAGGGGAAAAAAGTGAGCAATATTACAAAAACTATACATAAGACTTTCTTCGTCATAAAACTATACATAAAACTTTATGAGGGTAAATGCACTTTCATCATAAACTTACATCATCATCATCGGATGAGGACGAGTCCAAAGAATCATCATCATCATCAGATGAGGACAAGTCCATACCATCATCAGAATTATCCTTTTTACCTTCCTCTGCAACAGGCCTTCCCAGATGTTTACCTTAACAAATATAGTGATATACAGCAATCCCAGAGCATTAATTCAGCCATTGTCAAGAAAGCGCATGTGTGATCTTAAACGCGCAACTAATAAAAAGAAAATAAATCTGCATACCCATAATGTCACAGATGTCAGACATGTTTTCATCTTCATCTGAAATAAGGACATACTAGTTAGTTTATGTTATAATAGAAATATTGGATACTTAAACAATAGAAATTATTTCAGAAATATCAGTCAATGAATTTACCCTCATCTTCACGAGAATCGGATGTGAGAAAAGAAACAACATGGTTAAGGAAACAAGGTTCCCAAAGGATATTTCAAATAAAATCTAAATATGATTCGAAAATAATTCCAAGTGCATATGTTGAAGGATATTCATATGGGTTAGGCATGTCAGTCTTGTAACCACACAGGAAGACACTAGTAGTCTTTGAACTGTGTGAAAGCTCAAAGTCATTGCCAATAAACAAATCACACATAAATTGAGGATGATTTTTAGCCGATAGATTTCCAATAACTGTCTTCTTGCCATCAACTTTAACAGATACAACTACATTCTCACTTCCTGCCTTCTTTGTTTCTCCCAGTGCAACCTAAAAAAAGTAACAATAACATGAAAAGATCAATTATGTAAGGACCGAGATTGAGAACGAACACAAATTATAAATAATCAGACAAGTTGTATTTAAATTTTATTCTCTCCCTCCCTTTTTTTGTTCGTTGTGTGTGTTTGGAAGATGAGGGTTGAGGGTGCTAAACCTGTGATATGTGAATCACACACTCATCATCAACGTTAAATGAAACAGCCTTTCCTGGCTTCACTTCAATACCTGCATGATTCAGATCAATCATTCAAACTCCCATCATAAATCACACTTTACGAATTCCCTTGCATAGCTGGAGATTGAAAATGCAGCCCATAGTGCATTGAGAAAACGTAGAGTTATGCCAAATAACAAATCAGCGCTTGAAAAGCTCCCACAATCTAGCATCAACAATAAGTCAAAAAAAAAAACTTTTCACTACTTGAAATTTGACAACCCACTAAATGATCATCCCATCACCCCACATATAATGGCATAGGAGACCCTTATCAAGTTATCATCAAACTACAAGGCTTTCTACAGGGAAGGAAGGGTGATACTTAACAGTACATCATAAAATTCAGATTATAATACAGACAAGATGGCGAATTTCTCAACCTCGGAACACAAAACCGATGATAAGCCCGTTCCTCGGCACTAGACAAAACAGAGCCTAAAGTGGGATCGCGGAGAAGCTCGTTGACGAGAACACCATCTAAAATCGCACACCCCCCAACACCGTTTGAAGCATTACCAACATCTCATCACGGGAACACGACACGCCCAAAATTCGCACCAAAATAATTGCAAATAAAATCTCCCCGAGAACACAACACAAATATAATCAACCAGAATCTTGGAGAGAGAGAGGGGGGGGATCTTACCCCAGAATTCCATCGCTGCCTCGTTGGGACGACGAATCGGAGGCGCGGCCGCGCGAAACCCTAAGATCGAGGAGGAAGCGGGGA
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| CDS seq | ATGGAATTCTGGGGTATTGAAGTGAAGCCAGGAAAGGCTGTTTCATTTAACGTTGATGATGAGTGTGTGATTCACATATCACAGGTTGCACTGGGAGAAACAAAGAAGGCAGGAAGTGAGAATGTAGTTGTATCTGTTAAAGTTGATGGCAAGAAGACAGTTATTGGAAATCTATCGGCTAAAAATCATCCTCAATTTATGTGTGATTTGTTTATTGGCAATGACTTTGAGCTTTCACACAGTTCAAAGACTACTAGTGTCTTCCTGTGTGGTTACAAGACTGACATGCCTAACCCATATGAATATCCTTCAACATATGCACTTGGAATTATTTTCGAATCATATTTAGATTTTATTTGA |
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| Protein seq | MEFWGIEVKPGKAVSFNVDDECVIHISQVALGETKKAGSENVVVSVKVDGKKTVIGNLSAKNHPQFMCDLFIGNDFELSHSSKTTSVFLCGYKTDMPNPYEYPSTYALGIIFESYLDFI |
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| Function | Histone deacetylase HDT2 [UniProtKB/Swiss-Prot:Q9M4U5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0909150 | OsNip_01t0909150-00 | Chr01 | 39592613 | 39595176 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAATTCTGGGGTATTGAAGTGAAGCCAGGAAAGGCTGTTTCATTTAACGTTGATGATGAGTGTGTGATTCACATATCACAGGTTGCACTGGGAGAAACAAAGAAGGCAGGAAGTGAGAATGTAGTTGTATCTGTTAAAGTTGATGGCAAGAAGACAGTTATTGGAAATCTATCGGCTAAAAATCATCCTCAATTTATGTGTGATTTGTTTATTGGCAATGACTTTGAGCTTTCACACAGTTCAAAGACTACTAGTGTCTTCCTGTGTGGTTACAAGACTGACATGCCTAACCCATATGAATATCCTTCAACATATGCACTTGGAATTATTTTCGAATCATATTTAGATTTTATTTGA
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| Protein seq | MEFWGIEVKPGKAVSFNVDDECVIHISQVALGETKKAGSENVVVSVKVDGKKTVIGNLSAKNHPQFMCDLFIGNDFELSHSSKTTSVFLCGYKTDMPNPYEYPSTYALGIIFESYLDFI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68104 | SBH | 0.390314 | 0.788878 | 0.633378 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0909150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0044270 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043810 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0044200 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043660 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0043230 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0652800 | SBH | 12.4509005 | 30.3803415 | 25.1790535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042880 | RBH | 0.0 | 0.213023 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0653600 | SBH | 5.833362 | 11.695232 | 29.2314345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0043210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0043170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0043450 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0043410 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0043220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G043610 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0043340 | RBH | 0.0 | 0.0 | 0.0 |
