Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0899000 | OGI:01115800 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:39091734-39095307 | ||||||||
| Gene Symbol | RLCK52, OsRLCK52 | ||||||||||
| DNA seq | AAAGCAACACAAGTAACAGCGATACTATTTGAATCAAAGAACATCATCAGTATTCAGCAGTACATCATCTCTAGTTCACTGAATAAACGACTACTAGAACACAAGCCATCGTCTAATCTTCTGTAAACAGGCACCTAAATACTTGCAAATCCTATGGTTGGCCCAGAATGACAGTATATGCAATGCAATCCCGATTGTTAGACACCGTCTGCAAAAATTAAGTATGTTATTGTGCTCGGATCGTGTTCCTTCAAAAGGCAAAACACATTCTCCATGCAGTTAGCCTGAATTCCGAGAAGCAATAAGCAAGTAGCTCCATTCTGTGGTATGCCATGCAAAATGACCAAGCAGGAAAAACAATAGTCCCTGACCCTTAGAAGCTTATATGGTCTTAGTTGTTATTTCTTCTCTGATGATTCTGTACATCAACCGTCCAGAGCTGGTGGAGGCGCGGGTGGAGTCGGCTTACTTGTGAGCAGTGGAGATAAAGCCTTCACCACAATGCTCATGTTTGGGCGAAACTCAGCTTCGTATTGTACGCACAATGCTGCAACCGCTGCAAGCTGCATCGAGAAAGTGCAGTAGTGAGAAATGTGGGGGAAAAGAGAAGGAAAGGATGACTATCATGACTCATGTGTATAAATATTGTGTGCATGTATAGAGATCGAGACCTTGGCAACTCCTTTTGGTGGGTATTCACCATTCAACCGTGGATCTATACACTGCTTCACCTTATCTTCAGTTAATCTTGGTGTAGCCTGCAAAACAGAACTGAGACATGCTCAGAGAACTAGGTAAAAAGTAGCCACTAAAGGATTGGGCTGCGTATTGCTACATTGTACTAATCAAGGTGTTAACTGTAGACACTATAAGCTGCTAAATCAGATATTCAGATGTGATCTGAACTTAACGACAAGATAAATGAGTAAACTATATGGTGAACATTACCCATGTAACCAAGCTCTGCTGCCCTCTAGGCATTGTATGATCTACTGGTTTTCTTCCTGTCAGAAGTTCCAAGAGAACAACTCCGAAGCTATACACATCACTTTTCTGTGTCAGCTGACCGGTCATTGCATACCTGCAAAGTTCACATATTGGGTCAGATAATGATATCATTTCAAGCATAAAAACAGTGTTACATATATATCTTGATTATTCATCAGAAAATGTCATATAGAGGCAATAATGGGCTCTACAGCAACCCAGGCATAAAAACCTATATGTAGAAAGTGCCACAAAGTAAGAAATATCGTAGAGTAAGACCAGTTTCTTTCACTGCAGGAGTCCTAAATGTGCCTATGAATAAATAGAACTTATTGGATCCTTTTCAACAAACTATAATAATCACATTGTATACTGGTCCTTTCCAAAGTTAATTGAAGAAGTAATGCTATAAAGAAACTACAATTGAACAGTAAAATAAAGTTCATCACAGAATATGGTAAGAATTTTTACTCTGGAGCATGATAACCAAAGGTTCCCAGTACACGAGTAGAATGCAGACGAGCAGCCATATCTGGAGCCTGATTTGAGAGATTGAAGTCTGCAACTTTTGCCTTGAAGTCTTCAAATAAGAGTATGTTACTTGATCTAATATCCCTATGAACAATGGAGGGCTGAACCTTCTCATGTAGATATTCAAGTCCTTTGGCAGCATCAACAGCTATTCTTACTCGTTGCATCCAATCAAGTGCTGGACCAGGTTGTGCACCTTGCACCCCTTTTCTTCCTGTTACACAAAGTTAAAAAAGATATATCAACAATTGATCTGCTTCTGCTGCAGCTATACAGCACCCGTTCCCAGCTACCCAAAAACAGTAGTAAAGTTAGTCAAACTGGAGAACATGATGGATATGCCGAACCATACCATGTAGAACATCATGCAGTGAACCCATAGTGGCAAATTCATATGCTACTAGGCGAAGGTTACCCTCCGTGCAGTATCCCAACATATCTACAAAGTTTTCATGTTTCAATCTTGAAACCAAAGCGACCTAGCATCAGAAAATAAGCAGTGTTGTTTAGGATCCTCCATCTGTAGAAATGCATTAATGCTATAACCAAATAATAATAATTCATATCTCTAAAAGCAAGTCAACCTGGGTCAAGAATTCTGAAGTGGGCTCATTTTCATTAGAATCAAGTTTCTTCACTGCAATTTTTGTTCCACTGTCAAGAACAGCGTAGTACACTCTACCATAAGAACCTTCGCCTATCAAAGCACTTGAGCCAAAATCATCTGTCTTTTCTACTAGTTCGTCCAAGGATAGAACAGGAATATTGATAGTGAGAGCCGAATTTTGTGGCTGAGCTTTTTCAGTAGCAGAATCTTTCAAACCCTTTGTCACTCCTGGAAAAGGAGAAAAAAATGTAGAAAGGTGAACAATCAGAAACGGAGTTTTAAGTTTTCAATCAATGAAGTGACACTGCAGGACTAAGAAATATAAATAGAGAACACAAGCAAGGTCAAAGAAGCATACCATCTGCATTACTAGTCAGGACCTTGGCATGTCCATTTTCAAGCTGATCAGACTCGTTCACTTGACAATTGCAGCAGATCCAGCGGCGCCACCTTACCATCTCTTCTCACTACTTTACCCCTTGTAGTCTGTACAGCACATAAATTTTACCAAGAAATATATCAGATTGTCAGCAGAGACAATGTCCTTAGACCGGTTGTAAAATGTTCCAGCCTAAATTGTTCCCCATTCTTAATAAATTTCAGTGGGCAATCCTCTCCGTTCGCTCCTTATTAAGACATTGTCAGCAGAGACATACAGCGTCAGGAATTCAGGATATGTACTGCCACAATGGGCGTCTATGATGCTGATGCTATTCAGAAGGAGAGAATTCCAGATCGTCTAAAAATGAAATTGCTCTCTCGGCTAAAAATGGTGACCTCCATACATCACATACATGAGATTTCTGTACACAGAATTTACGGTGTCGGTAACATAAACCACATAGTCAATAAACAAATAAACCCTCAAAGACAAAGTCTCAAAACAATTTCATTCATTCAACATGAAAAACTGGTCAATCAACTTATCTCATCACGAACACAGCCAGTACTCACGAGGCAGCCATAATTGCCAATAAACCTAAACACAAAAACAGTACGCATGCGTAGCTCCGAGATCCAAACCATGGTCGCACAACACAAACCCACGCGCCTAACAAACCGCCGCATCCAAAAAAAAAAAAAAATCGTCACCTAACACCAATCAAACTAGCACGCACGCGCACCCCACTAGCCTACACCCACATCCACTCACCCCAGCGCAGCGCCGAGCCGACGAATCCCATCCCCCACACAAACCGCGTCGTCTCCACTAGTACTCCGCCGCCGCCCAGAAACGAAATCGGAGACGATCAAGCTCGAAAACGGTGTTGGATTTCATGGGAGGGAGGGAGGGGGGGAGAACCTGAAACCGTGTGCGTACCTCTGCTCCTCTCTGCCTCCGGCGGTTTCGTCGTCGTCGTCGTCGTCGTCGGCGGCGGCGGCGCTGCTTCACTTGGTCGGCTTCGTCGCGGCGGAGGCGCGGTTTTATAGCGGAGTTCGGTTTCCTCT
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| CDS seq | ATGGTAAGGTGGCGCCGCTGGATCTGCTGCAATTGTCAAGTGAACGAGTCTGATCAGCTTGAAAATGGACATGCCAAGGTCCTGACTAGTAATGCAGATGGAGTGACAAAGGGTTTGAAAGATTCTGCTACTGAAAAAGCTCAGCCACAAAATTCGGCTCTCACTATCAATATTCCTGTTCTATCCTTGGACGAACTAGTAGAAAAGACAGATGATTTTGGCTCAAGTGCTTTGATAGGCGAAGGTTCTTATGGTAGAGTGTACTACGCTGTTCTTGACAGTGGAACAAAAATTGCAGTGAAGAAACTTGATTCTAATGAAAATGAGCCCACTTCAGAATTCTTGACCCAGGTCGCTTTGGTTTCAAGATTGAAACATGAAAACTTTGTAGATATGTTGGGATACTGCACGGAGGGTAACCTTCGCCTAGTAGCATATGAATTTGCCACTATGGGTTCACTGCATGATGTTCTACATGGAAGAAAAGGGGTGCAAGGTGCACAACCTGGTCCAGCACTTGATTGGATGCAACGAGTAAGAATAGCTGTTGATGCTGCCAAAGGACTTGAATATCTACATGAGAAGGTTCAGCCCTCCATTGTTCATAGGGATATTAGATCAAGTAACATACTCTTATTTGAAGACTTCAAGGCAAAAGTTGCAGACTTCAATCTCTCAAATCAGGCTCCAGATATGGCTGCTCGTCTGCATTCTACTCGTGTACTGGGAACCTTTGGTTATCATGCTCCAGAGTATGCAATGACCGGTCAGCTGACACAGAAAAGTGATGTGTATAGCTTCGGAGTTGTTCTCTTGGAACTTCTGACAGGAAGAAAACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGGCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGGTTGAATGGTGAATACCCACCAAAAGGAGTTGCCAAGCTTGCAGCGGTTGCAGCATTGTGCGTACAATACGAAGCTGAGTTTCGCCCAAACATGAGCATTGTGGTGAAGGCTTTATCTCCACTGCTCACAAGTAAGCCGACTCCACCCGCGCCTCCACCAGCTCTGGACGGTTGA
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| Protein seq | MVRWRRWICCNCQVNESDQLENGHAKVLTSNADGVTKGLKDSATEKAQPQNSALTINIPVLSLDELVEKTDDFGSSALIGEGSYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRLKHENFVDMLGYCTEGNLRLVAYEFATMGSLHDVLHGRKGVQGAQPGPALDWMQRVRIAVDAAKGLEYLHEKVQPSIVHRDIRSSNILLFEDFKAKVADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLTEDKVKQCIDPRLNGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALSPLLTSKPTPPAPPPALDG |
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| Function | PTI1-like tyrosine-protein kinase 3 [UniProtKB/Swiss-Prot:B9DFG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0899000 | OsNip_01t0899000-01 | Chr01 | 39091734 | 39095307 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTAAGGTGGCGCCGCTGGATCTGCTGCAATTGTCAAGTGAACGAGTCTGATCAGCTTGAAAATGGACATGCCAAGGTCCTGACTAGTAATGCAGATGGAGTGACAAAGGGTTTGAAAGATTCTGCTACTGAAAAAGCTCAGCCACAAAATTCGGCTCTCACTATCAATATTCCTGTTCTATCCTTGGACGAACTAGTAGAAAAGACAGATGATTTTGGCTCAAGTGCTTTGATAGGCGAAGGTTCTTATGGTAGAGTGTACTACGCTGTTCTTGACAGTGGAACAAAAATTGCAGTGAAGAAACTTGATTCTAATGAAAATGAGCCCACTTCAGAATTCTTGACCCAGGTCGCTTTGGTTTCAAGATTGAAACATGAAAACTTTGTAGATATGTTGGGATACTGCACGGAGGGTAACCTTCGCCTAGTAGCATATGAATTTGCCACTATGGGTTCACTGCATGATGTTCTACATGGAAGAAAAGGGGTGCAAGGTGCACAACCTGGTCCAGCACTTGATTGGATGCAACGAGTAAGAATAGCTGTTGATGCTGCCAAAGGACTTGAATATCTACATGAGAAGGTTCAGCCCTCCATTGTTCATAGGGATATTAGATCAAGTAACATACTCTTATTTGAAGACTTCAAGGCAAAAGTTGCAGACTTCAATCTCTCAAATCAGGCTCCAGATATGGCTGCTCGTCTGCATTCTACTCGTGTACTGGGAACCTTTGGTTATCATGCTCCAGAGTATGCAATGACCGGTCAGCTGACACAGAAAAGTGATGTGTATAGCTTCGGAGTTGTTCTCTTGGAACTTCTGACAGGAAGAAAACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGGCTACACCAAGATTAACTGAAGATAAGGTGAAGCAGTGTATAGATCCACGGTTGAATGGTGAATACCCACCAAAAGGAGTTGCCAAGCTTGCAGCGGTTGCAGCATTGTGCGTACAATACGAAGCTGAGTTTCGCCCAAACATGAGCATTGTGGTGAAGGCTTTATCTCCACTGCTCACAAGTAAGCCGACTCCACCCGCGCCTCCACCAGCTCTGGACGGTTGA
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| Protein seq | MVRWRRWICCNCQVNESDQLENGHAKVLTSNADGVTKGLKDSATEKAQPQNSALTINIPVLSLDELVEKTDDFGSSALIGEGSYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRLKHENFVDMLGYCTEGNLRLVAYEFATMGSLHDVLHGRKGVQGAQPGPALDWMQRVRIAVDAAKGLEYLHEKVQPSIVHRDIRSSNILLFEDFKAKVADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLTEDKVKQCIDPRLNGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALSPLLTSKPTPPAPPPALDG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.149767 | 0.880537 | 3.125075 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0890100 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g67340 | RBH | 0.656883 | 0.470394 | 0.898331 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0899000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043620 | RBH | 0.000000 | 11.614460 | 4.387046 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043220 | RBH | 0.260519 | 3.604181 | 0.934887 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043560 | RBH | 0.243015 | 9.222626 | 6.559286 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0043010 | RBH | 0.0 | 0.249027 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042600 | RBH | 5.970371 | 13.714542 | 9.498219 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0644400 | RBH | 8.327455 | 24.1026255 | 6.844775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0042240 | RBH | 0.081021 | 0.782251 | 1.004323 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0645100 | RBH | 7.667656 | 14.171809 | 11.708728 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042570 | RBH | 0.281617 | 0.180274 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042510 | RBH | 0.213960 | 17.648294 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042810 | RBH | 0.000000 | 21.961830 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042800 | RBH | 0.918387 | 0.643981 | 1.214288 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042590 | RBH | 0.107281 | 2.513479 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042990 | RBH | 0.399325 | 3.965508 | 1.585752 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042710 | RBH | 0.000000 | 9.219941 | 5.820145 |
