Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0894100 | OGI:02061080 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:38871380-38874494 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTATTAATTTGTCCATATCATAAATGTTGATTGCATAAATAAATACAAATAATGCAAAACCAAAATATTATCTATACTATTCTTGCTAGTTACGAACATAATCTTCCCACATCTTCTTAGCAATCATATCTCTAATATTATTCCCACTGATCATTTGATTGCTAAGAGATGGCACATCATTTCGGTATTCACTGTCACCTTCTGGTAGATCGACAAAATTAGTAGGTTCTATATTATCAGGTTGGTTGTCCAACCAGCCCTCATCACCATTAAGCAACCGGATCATGTTGTGGAACACCGCAGCAGCTGCTGGAATCCGCACTTGGTTCTTTATCCGATGGAAAGTGCCTACTTTCAGGATGGGAAATCGCTTCTTTAGAACCCCTAGAGCTCTCTCTACATGGTTTCTCAGAATGGCATGGCGATGATTGAATAACTCCTTGTAGTCTCTAGGTCTACGATGACCACGTCCAAACTCCTTTAGATGGTACCGAACACCACGATAAGGAGTAATGAACTATGGTGTGTTGGCATAACCACCATCTACTAGAAAAAATTTACCATTTGGGACTTGAAAGCCACTATTCATTGCTGATCTAAGGACCCTAGCATCGGTTGCAGACCCCTCCCAACCACATGAGATAAAAGTGAAATTTAGGTCGAAATCACAAGCAACTATCACATTTTGGCTCAAAGTCCCTTTTCTGTTCCTATAAGGAGCTGCCTTCTCTCCATCTATAGTTATAGGAATGTGAGTGCCATCAATAGCCCCTATGCAATTCTGCAGCAAAAAGGGAAGAAAAGGACAGAATATGCATGAGTTATTTAATTGGAAAAGGAATAGATATTCATTTCTAGTTTGAGTGCCAGATTCACCTTGAAGTAAGGAAAGAAGCGAGGATTTGTTCTAATCTTCCAATGCGTTTGGTCGGCATGAGGAAGCTTGAGAAATCTATAGGTGAGAGCTGGGATTATCTTGAAAATAGACTTAATATGCCGATGAAGTGTAGACCCACTATGCTTGAATTCATACTGTAGATCTTGAAAGCTTGCATTGTGAGCGAGCATGAACATAAATATCCCAAGCTTCTCCTCAATCCTCAAGCCTCTACTATCCTTTAACAACTTTTCCTCTCTAAGATAATTCGCTATTGTCTTGAAAACATGAGGCTCCATGCGGAATGCAACTTTACAATCCATTACATGTCCTTCAAGGATTTCTTGAAGCCGCTCTTTACCGGATAGTCTTGAGATATGTCTAGGTATTTTCTCACTATTTGTCATACCGCACAGCATATACATCGCAGGAAAAACAAAAAGCATCATATCATCGTCCTCTTCTCTCCTCCTTTTAATTTCATCCGCCATTCTCGAACTGATTTTATCACTAAAAGAGATATAGAATTACTATACTTTAAACTATGTGTGAGAACATAATAATATGCATATGTATTACAATATTATTAAACATGAAATTAGAGGCATTCAAGGTGGCTACATGCATAAATACTTTTAATACTTTCAGCAAATAAACAGTCTGCAATGGAAGGAGGGGGATCAATAATGTGTTCAGATTTTGACTAGTTCCAGAAGTACTTTGTGTACTTAGTTTTGTTTAAACCTCAGAGATAGCAACTTTAATAAAGTGAGGATATCCTTCTAGGGTAGGATGTTTACTTGAAAATAACAGCCTCCTGTTCACTAGCAAAAAAAAACTGAGACCATCTGCCACCTGAGCAAGATCACATAACATTGTACCTACAATCTCTCTCTCTCTCCAACTTCAAATTACTTCTGTTACTCTAGTAAATATGCAGGGGCAAGATTAAATGCTTCATATCAGGCAAATGTAAGTACAACTGTATTTAGTTTTTTCTCAAATACCTTGAGTAATATCAACTCCTTCAGCTTTACTTTTGCCAACCCCACACGCCTGTGCCTCTCCTGAAATTTAATTCAGCACAACAGATTATATTTTTGTCATTCAATAGCAATTTATATAGCTTTGTATGGTATGACCTCTAGTAATATATCTGAACACCCAGTTTCCTGAAACTAGTTGTGAACATAGTAGCAGTTCAGAATAGATAAATATGCTAAATTGATTGCTAAGAGTAAAATAGGTATTCGAACAAAAGATGGACAGCTACATTTCTCAAGTTTTAACAAGGGCATTTTGCTAAACAAAAAGCCATGGAAAAAATTACCAAAACTAGAATGTATACTACAGTGTCCACCTGACCACCTCATAGCATGACTTTAAAAATTTTTGTATCTTCTTGCTCATTCAATTGGCATATAGTATTGGTCGTTCAATCTGAAGCTCAAATGACCTTGGCCAAAAGCAAAGTGATGCATTCTAGACAGCAACAACAGAGTGCACTAGTTTTTATTTTTTAGGTGTGCTCCCACTGCATCTACAATAATTCCTGGAGAATTAACAAACCAGGTTTCTCCCTCACAAAAAAAAGAAAAGAAAGAAGAGAGCCCATGTTCAGAAATATAGGATATGCCAATTCAAATATATATTTCCTTGATTACAGAGCAACTGATAGGCAAGATTTGCGCACACACACAGAGATGTGCATGGAATTTTCTGTGGTTTCAGGTTCTACTACTACAAACCACATCACCCCTCCTTCTAAGCAGAACATGACTGATACTTCAATCCATACAGCCACTCAATACATCAACTAGCAACAAATTCATCCACTAGATAAGTCACAAAATCTTTTCTGAGTGGGAAAAGAGGAGATCAAGAATCAGACCTGCTTCTTGGTGTCCGGGCTGTTGCCCTCGACCTTGCCCTCTCCCGCAACCGGTGAATCCGAAGCGAGGAAGGAGAGATGGCGAGCGCCGGCGACTGGCTGGGATGGAGAGCGGGAAGGAGAGCGGTGGCGGCGGCTGAAGCGGGATGGAGACCGGCGGCGGCTGAGGACGGGATGGAGACCGGTGGCGGCTGAAGCTGGATGGAGATCGTCGGCGACCGAGGGCGGGATGGAGAGCGGCAGCGGCTGGAGATATGCTGCTCCTGGATCTCCACCCTAGAGCCGCCTCCCGGACCTCGCGTCGCCTCCCGGACCTCACGCCGCCTCCAAACCCTAGCGCAGCGAG
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| CDS seq | ATGGCGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTGCGATGTATATGCTGTGCGGTATGACAAATAGTGAGAAAATACCTAGACATATCTCAAGACTATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTGCATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGTTGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAGCTTGGGATATTTATGTTCATGCTCGCTCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGCATAGTGGGTCTACACTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATAGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGATGCTAGGGTCCTTAGATCAGCAATGAATAGTGGCTTTCAAGTCCCAAATGGTAAATTTTTTCTAGTAGATGGTGGTTATGCCAACACACCATAG
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| Protein seq | MADEIKRRREEDDDMMLFVFPAMYMLCGMTNSEKIPRHISRLSGKERLQEILEGHVMDCKVAFRMEPHVFKTIANYLREEKLLKDSRGLRIEEKLGIFMFMLAHNASFQDLQYEFKHSGSTLHRHIKSIFKIIPALTYRFLKLPHADQTHWKIRTNPRFFPYFKNCIGAIDGTHIPITIDGEKAAPYRNRKGTLSQNVIVACDFDLNFTFISCGWEGSATDARVLRSAMNSGFQVPNGKFFLVDGGYANTP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0894100 | OsNip_01t0894100-01 | Chr01 | 38871380 | 38874494 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTGCGATGTATATGCTGTGCGGTATGACAAATAGTGAGAAAATACCTAGACATATCTCAAGACTATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTGCATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGTTGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAGCTTGGGATATTTATGTTCATGCTCGCTCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGCATAGTGGGTCTACACTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATAGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGATGCTAGGGTCCTTAGATCAGCAATGAATAGTGGCTTTCAAGTCCCAAATGGTAAATTTTTTCTAGTAGATGGTGGTTATGCCAACACACCATAG
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| Protein seq | MADEIKRRREEDDDMMLFVFPAMYMLCGMTNSEKIPRHISRLSGKERLQEILEGHVMDCKVAFRMEPHVFKTIANYLREEKLLKDSRGLRIEEKLGIFMFMLAHNASFQDLQYEFKHSGSTLHRHIKSIFKIIPALTYRFLKLPHADQTHWKIRTNPRFFPYFKNCIGAIDGTHIPITIDGEKAAPYRNRKGTLSQNVIVACDFDLNFTFISCGWEGSATDARVLRSAMNSGFQVPNGKFFLVDGGYANTP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0299600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66930 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0894100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006560 | SBH | 0.0 | 0.0 | 2.404276 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006210 | SBH | 0.069970 | 0.0 | 0.512102 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006520 | SBH | 0.0 | 0.566940 | 1.080664 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006040 | SBH | 0.039012 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
