Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0872600 | OGI:01112080 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:37837153-37840372 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | GTTGCACGCACGCTAATTGAAAAATCACACTCAAAACGGTTGGGAGGTTAGCAGCCATGGCAATGGAGGCGGAGGCTCTCCTGCCGGAGCCGGAGCCGGAGTCGCCGCCGCTGCTCGCCGTCGACCACCTCGGCGGCCCGGCCTCCCGCGGCAGCTCCGGCCGGTGGCCCGCCGCGTTCTTCCTCATCGGTACGTACGTTCGCCGCCGCCTTATCCTTTTTTTTTTGGAAAAAGAAAAGAAGAGAAAAAAAAAGTAGCATGTAACGAGGCGTGTTGTGTTGTGAGGTGCAGGAGCGGAGGTAGGCGAGAGGTTCGCATACTCGGGCATCATGGGGAACCTGGTGATCTACCTGACCGGGCCGCTCCGGCAGCCGACGGCGGCGGCGGCGGCGGCGGTGAACGTGTGGATGGGCACCTCGATGCTGCTGCCGCTGCTCGGCTCGGCCGTCGCCGACTCATGGCTCGGCCGCTACCGCACCATCGTCTGCGCCTCCCTCCTCTACATCTTGGTACGTGTACCATGACTATCCTCATTTTTTTTCGTTTATATGCTTATACTTATATTATAAACTAAAATTTAAAAGTTTCAACTTTAAATTTAGAGTTGACTTTAAATTTAGAGTTGATTTTGTGGTTTTTTCATCGTAGTTTGTTTTTTTAGCATTTGCTTTTAAATCGCTAAAAAAACACGTATATAAAAATTTTATTCACAGATTATTTTTCGTTTGCAAATATGTCGTTTGGTTTTTTCCCTGAATAAGCCAACCAAGTATGTAAGTATGTATAATCTTAGGACGTGTTCACTTTGATGCCATTTTAACCTTACCAAATTTTAGTAAAGTTAAAAAAAAAATAGCTACATTTAGTTTGTTATCAAATTTTGGTAACTGTATAAGAAATTCTACTAAAATTTTGGCAAGTTGCCAAAATTTTAGCAACTATGCCACCAAAATTTGATAAGGTTTTTTTTGGCATCAAAATAAACAGGCCCTTATTTTGCCTGTATATATAGACCATAGTAGAGTAGACAGTGATACTACTTATTAATTACTGGTAGATTATTTGCATCAAAATATGATTTTTCCAACAACTTTATATACGTAGACCACTTATTTTAAGCTATTTGTTCGGTTTATAACATACTAAGTCGTGCATAAAGTACTATTTATGTTTTACTATCTCTTAACAACAAAACTATTAATTATAAAAAATTTTCAAATAAGACGGATGATTAAAGTTGGACACGAAAACTCATAGTTGCACTTAAAATGGGAAGGAGGGAGTATAATATTTGGTTCTTCTTTATTTAAGTAGATCATCAATCAACATTTCATCTGAAAAGAATAGCACCCTACTACTAGCACAGACGTGTATTGTGACGTTTCAGAGAGGGACTACACGAGTAGCTGTCAGTTTCACGGCGAACGAATGGATTGGTGAAATCCGCAGAAACAAAAAAGAACCCGGCAAAAGTGCAACTAGAAAATACAGTTTTCCCTTTATAGGTAAAAAGGAGATACTAGCATTTTGATTTGTGAGTCGCTGTCGCAAACAAGAGTTCGAAGTACTCAGATTCTACCATGTCGCATTATCTCATCCAGCAGCTTACAAATTACTATCCTGGCTTGGTTTGGAGCCTGATTTTTTTTTCTTACTGTTTTTGCAGGGGCTGGGCATGATCACTGTCTCGTCGGTTCTTGCACCGGAAGAGTCATCCGAGAGCTCAAATCTAGCTGCTCATGTGGCTTTCTTCTACTTCTCACTCTACGTGGTGGCGTTTGCTCAGGGCGGACACAAGCCTTGCGCGCAGGCGTTGGGTGCAGACCAGTTCGACGAGAACGACCCCGGCGAGCTCGCCTCCAGGAGCTCCTTCTTCAACTGGTGGTTCTTCGCCTCCTACGGCGGCAACACTGTCACTGTTCCCATCTTGAATTATGTCCAGGAAAGCGTAAGCTGGCAGCTTGGCTTCGCAATCCCATGCATCGCCATGGCCGTTTCTCTTGCCATCTTCTTGATCGGGACAAGGAGTTATCGCTTCTACCCTCCGAAGAGTAAGGGAAACCCATTCGGAGAGGTCGCCGAGTGGATTCGACGTTGGATCGCATCGTCCTGTTCGAAGTAAGGTTACTACTGAAAGTCTGAAACTTCCCATTGAGTCATTTTGGAACTAACATTTGCTGCAGATTGCCTGACAGTTCTGATGAGTTGCTACCGTCATCATCGTCTGAGGGGGATGTCAGCAATTCAAGCAGTGAATTCGTCCCTAAAGAAGCTGCAGAGCTGGTCAAGTTGTTTCCAATATGGGCTTCCAGCCTGATATATGCTGCTGTGATGGCACAGTGCATCACTTTCTTTACAAAGCAAGCAAGCACACTGGACAGAAGGGTAGGCAGCTTAGTGCTGCCAGCTGCTTCAAACGGGGCATTGTTCAATGCTACAATCATGGTCTTCCTCCCAATCTATGACAGAATCTTTATCCCAGTGGCCAGAAGATACACCAAGAACCCTAGCGGTATCACGACGCTGCAGAGGATCGGCGTCGGGTTGGTTCTCTCGATCATCACGATGATCGTTGCTGCAATGGTTGAGATGAGGAGGCTCAGGATAGCAAGAGATTTCGGCCTTGTGGACAAACCTGAAGCTGTTGTTCCTATGAGCTTCTTGTGGATTGTTCCGCAGAACATTCTGGCTGCAATTTCTGATATGTTTGCTGTGATTGGATTGCAAGAGTTCTTCTACGGTGAGGCACCGGAGAGTCTGCGAAGCTTTTCCATGGCTCTGTTCTTGAGCATAATTGGAGTTGGGAACTTCATCAGTAGTTTCATTGTATATGCCATTGACAGGGTGACCAGTAGCTTTGGAGACAGCTGGTTCTCTAACAATCCAAACAGAGGGCATGTCGATTACTTCTACTTGCTTATTACCGTGCTCAATGCTTTGTCCCTGGCCTGTTTCTTATACTTTGCTAAAATGTATGAACATAGGAAAAAGGTCATCTCAGTGCAGTGACATTGTGTGCAGCCTACATATTTGTAGCTCCACTGATAAGGTCACCTTCACAATCTGATCCAGTCTCAAGAATGTAACATGGTAAAGCTGTATCTGGTATAATGTATGTTCCAGTTTCACTTCCTTCATTGATACGTCCTAACTATACTTTGTAAGAAATTATGTGACCCAGCTGCAAATGCAAATGAAATGTTCCTTAATTTCATGTTTT
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| CDS seq | GACAGAAGGGTAGGCAGCTTAGTGCTGCCAGCTGCTTCAAACGGGGCATTGTTCAATGCTACAATCATGGTCTTCCTCCCAATCTATGACAGAATCTTTATCCCAGTGGCCAGAAGATACACCAAGAACCCTAGCGGTATCACGACGCTGCAGAGGATCGGCGTCGGGTTGGTTCTCTCGATCATCACGATGATCGTTGCTGCAATGGTTGAGATGAGGAGGCTCAGGATAGCAAGAGATTTCGGCCTTGTGGACAAACCTGAAGCTGTTGTTCCTATGAGCTTCTTGTGGATTGTTCCGCAGAACATTCTGGCTGCAATTTCTGATATGTTTGCTGTGATTGGATTGCAAGAGTTCTTCTACGGTGAGGCACCGGAGAGTCTGCGAAGCTTTTCCATGGCTCTGTTCTTGAGCATAATTGGAGTTGGGAACTTCATCAGTAGTTTCATTGTATATGCCATTGACAGGGTGACCAGTAGCTTTGGAGACAGCTGGTTCTCTAACAATCCAAACAGAGGGCATGTCGATTACTTCTACTTGCTTATTACCGTGCTCAATGCTTTGTCCCTGGCCTGTTTCTTATACTTTGCTAAAATGTATGAACATAGGAAAAAGGTCATCTCAGTGCAGTGA
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| Protein seq | DRRVGSLVLPAASNGALFNATIMVFLPIYDRIFIPVARRYTKNPSGITTLQRIGVGLVLSIITMIVAAMVEMRRLRIARDFGLVDKPEAVVPMSFLWIVPQNILAAISDMFAVIGLQEFFYGEAPESLRSFSMALFLSIIGVGNFISSFIVYAIDRVTSSFGDSWFSNNPNRGHVDYFYLLITVLNALSLACFLYFAKMYEHRKKVISVQ |
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| Function | Protein NRT1/ PTR FAMILY 5.12 [UniProtKB/Swiss-Prot:Q9C7U1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0872600 | OsNip_01t0872600-01 | Chr01 | 37839529 | 37840372 | + | RAP2018-11-26 | ||
| CDS seq | GACAGAAGGGTAGGCAGCTTAGTGCTGCCAGCTGCTTCAAACGGGGCATTGTTCAATGCTACAATCATGGTCTTCCTCCCAATCTATGACAGAATCTTTATCCCAGTGGCCAGAAGATACACCAAGAACCCTAGCGGTATCACGACGCTGCAGAGGATCGGCGTCGGGTTGGTTCTCTCGATCATCACGATGATCGTTGCTGCAATGGTTGAGATGAGGAGGCTCAGGATAGCAAGAGATTTCGGCCTTGTGGACAAACCTGAAGCTGTTGTTCCTATGAGCTTCTTGTGGATTGTTCCGCAGAACATTCTGGCTGCAATTTCTGATATGTTTGCTGTGATTGGATTGCAAGAGTTCTTCTACGGTGAGGCACCGGAGAGTCTGCGAAGCTTTTCCATGGCTCTGTTCTTGAGCATAATTGGAGTTGGGAACTTCATCAGTAGTTTCATTGTATATGCCATTGACAGGGTGACCAGTAGCTTTGGAGACAGCTGGTTCTCTAACAATCCAAACAGAGGGCATGTCGATTACTTCTACTTGCTTATTACCGTGCTCAATGCTTTGTCCCTGGCCTGTTTCTTATACTTTGCTAAAATGTATGAACATAGGAAAAAGGTCATCTCAGTGCAGTGA
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| Protein seq | DRRVGSLVLPAASNGALFNATIMVFLPIYDRIFIPVARRYTKNPSGITTLQRIGVGLVLSIITMIVAAMVEMRRLRIARDFGLVDKPEAVVPMSFLWIVPQNILAAISDMFAVIGLQEFFYGEAPESLRSFSMALFLSIIGVGNFISSFIVYAIDRVTSSFGDSWFSNNPNRGHVDYFYLLITVLNALSLACFLYFAKMYEHRKKVISVQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0872600 | OsNip_01t0872600-02 | Chr01 | 37837153 | 37840313 | + | IsoSeq | ||
| CDS seq | ATGTGGCTTTCTTCTACTTCTCACTCTACGTGGTGGCGTTTGCTCAGGGCGGACACAAGCCTTGCGCGCAGGCGTTGGGTGCAGACCAGTTCGACGAGAACGACCCCGGCGAGCTCGCCTCCAGGAGCTCCTTCTTCAACTGGTGGTTCTTCGCCTCCTACGGCGGCAACACTGTCACTGTTCCCA |
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| Protein seq | MWLSSTSHSTWWRLLRADTSLARRRWVQTSSTRTTPASSPPGAPSSTGGSSPPTAATLSLFP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.084941 | 1.617678 | 1.414021 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0430900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g65210 | RBH | 0.047725 | 0.313718 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0872600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041920 | SBH | 0.279668 | 8.486093 | 1.177331 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0041460 | SBH | 6.233091 | 43.372257 | 2.263746 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041840 | RBH | 1.474215 | 4.866974 | 2.666068 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0041310 | SBH | 0.171914 | 0.182057 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040900 | SBH | 2.478813 | 1.457984 | 8.832377 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0621500 | SBH | 12.265923 | 32.5966235 | 2.5570395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0040540 | SBH | 0.195627 | 0.119247 | 0.359309 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0621500 | SBH | 15.933451 | 19.0095835 | 4.193721 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040880 | SBH | 0.115829 | 0.066542 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040850 | SBH | 0.256550 | 2.458865 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041070 | SBH | 2.037489 | 1.673819 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041050 | SBH | 0.693163 | 0.375836 | 1.153008 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040900 | SBH | 0.487130 | 2.958617 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G041330 | SBH | 0.174183 | 0.372829 | 0.174223 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040990 | SBH | 1.513871 | 53.336914 | 7.698227 |
