Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0870500 | OGI:01111960 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:37745526-37748575 | ||||||||
| Gene Symbol | SDRLK-16 | ||||||||||
| DNA seq | GGTTGGTGCCACACTTTTGGCAAGATTCCTTCACCATGATGTGGGTCCCACTGTCATTGACACATAAAAGTGTGGCAAGTGTACTCTCCTATGGCTGAAGTATGGCTTCAATTTTATTGGCCACATGTTAAGCATGTTAGTTAAATGAAGTATAGCAAGTTTTGGTAACGTGAGTATGCAAGTTCTGGCGATTTTAACGCTTAGCCGCCCAAACGCAGACTGGCGTCAAGCCTGCAACCGCCTCACTTTGACGGTAAATCGGAGAAAAACCGCAAGTTATTCGACTGATTCGCGAGGTCCGCGAGGATTTGGAGTGATCTCGGAACCGGCGGGACGCCGATCTCCACAAGCCCTTCGAGCACCTGCACCACCGTCGCCATGGCCGGCCTCGCCTTCTCGTCGTCCTGGATGCACCAGCACGCCACCCTGCATGCTCTCTCCACCTCGCCCATGTCGGCGTTGACGCCTACACGGCCGTCCACCACGGCGCTGACCAGCTCATCCCGGCCGCCGCCACCGCCGCCGAGCGTGCTCGCCGCCAGCAACGGGAGCAGGCCGTCCACCGCCGCGCCACCCTGCTCCTGCACGTTCCTCCGCCCCGACACGATCTCGAGCAGCGTCATGCCGTAGCTGAACACGTCCGCCTTCGCCGTCACGGCCGTGCCGGCGATCCACTCCGGCGCGATGTACCCCACCGTGCCCCTCGACGTGGTCAGCACCCGGCTGAAGTCGCGGCCCATGAGCTTGGCGAGGCCGAAGTCCGCAACCTTGGGAGCAAACGAGCCATCGAGCAGTATGTTTTCTGGCTTGATGTCGCAGTGTATTATGCAATCCCTGCATTTCTCGTGGAGGTAGTCTAATCCCCTCGCGATTCCAAGAGCAATCTTGTACCTCGTGTTCCAACTCAGGACGTGTTGGTTACTTCCAAAAAGATGCTTGTCCAACGAACCATTCGGCATGTACTCGTAGACGAGTAGTCTTCGAGTTTTCTCTGAACAAAACCCGAGCAATCTAATCAGGTTGACGTGTTGGATGTTGCCGATTGTGCTCACTTCTGAGCGAAACTGCTTCTCCCCCTGACGAAAACCTTCGAGCTTCTTCACGGCCACCATGGTTGCATCAGGCAGTGACCCTTTGAACACTGAACCGAAGGCGCCTCCTCCGAGCTTCTCGGAGAAATTTTTGGTCACAGATTTCAGGTCACGGTATGTGAATGATATCAAGGAACCTTCCACTCGTGTTGTTGCCTTCACCATTCTTCTTCTCAAGATGACAACCAAAACAGCTATCATGAGTAGTACAGCACCAGTAGCAAGGACAGAAAAAGTGATCAACTTCTTGGTATGCTTTTGCTTCTGTCCAGACAATTCTGAAGCAGCCAATCGAATCAAAACTGCGCTGCTGCCTTGGCTACCAATGACACTCACATCTTGCAGGTTGATGAGGTCTCTGTACCACAGTGAGCAGCTGCCATTGTAGGAGTAGGCAGTGCAAGAACATTACTTAGGCATGCTTCCTCACACTGATCAATACCTGCGGCCACCACACTCTCTGCGTCGCTTGGTAATCTTACATTAGCCATCGTGTAGAACCGATCAGTACTCCTTCCTACCACCGAGCCATTGCTGCTGCACTGCAGCTCCACGTTTCTTCTGCACCCTGAAGTGTGATCTCCCTGCAACCATTCGCCAACGTTTTGCTCACCGAAGCCACGGAGGCAGCTACAAGATGCCATTGCATTCTCGGTGCAGACACTGAACGGCCCACACAACGAGTACACGTCGCACTGCGCCTTGGGCTGCGACCAGAACAGCATCCAGTCGTTGGCGCCGTTCATCCATGTCAAGAACTGGATCTGCCCCATCTCGCCCAAGACGAACCTCGTGAGGACCGAGTCGTCCTTGAGGTCGTACACGAAGTAGCTCTCGTTCTCGCCGTTGACGTAGTCGAAGGTGTACAGCGAATTCGGGTAGCTGCCGGTCGGCGTCATCTCCGGCACGCCGGTGAAGATGCGGCCGGTCCAGTTGCCGCTTGTCCAGTACTGCAGTGTACTGTTCCATTGGAGCAGGTATTGGCTCGTGCCGTTCGGGTCCAGCTCGAGGGAGAACACGCCGGGGACTGGGTCATTGCGTGCCTTCCATGCGACAAGACGAGTGCTCACGCCGGTGAGCTTGTTCCGGCCGAGCTTGCCGCCGGGGAGCCAGGTATCGCCGAAATGGTCGAAGCTCTGCCAGAGGATGATGGAGGTGTTCGATGCGTCTGCGAGGACAAGGTTGCCGGAGTCGAGGATGACACCGACCGTGGAATTGGAGGTGAAGTTGGAGATGTTCGTGGACCAAATTGCAGTTGTTGAATTGTCGAGTAATACCATGTTGCCGTCGGTTGCTATGGTTAGTTGTGAGGTGTCCGGATTCGAGATTGGAGAGCCCCTGTTTGCAACCCAGACCGGCGTGTGCTTGGAGATTTGGTAGTACCAGGTGCCAAGGTACCAATGCTCTGAGTTTTCTGTTGCACATCAAAAAGTGGCCGAGTAAATGAACATGTCGCTCATCAGTACGTAATGCTAAAGCTAAATTTTAGTTCTCCGAATAACATGAGAAAACTTAGTCCAAACTATACTATTCTCTTTACTTTATTGTTAAGGCTACCATATTTTCTAGTGTAAGTTGTAGGTACCGTATATTTTGAGGTACTAAATTTTTTAATGTAAAATTTAAGTACCTTTGATATATTTTCTCAAAGAACGTAAAATTTCTCTAATATTAAAGTTATTTTTAAACCAAAAGAATCATGTATTGTAGCTACGGAAAACCACATGTAACCACGAAGAATCATGTATAACAGGTTGGGAGGTACCTGGCTGGAAGAAACCTAGCGCGAACTTGCCGCGGTTGGACACCAGTGGCCTCTGCCTGCCGGACAACGGCCGGTCGGCGGCGACGGTGTCAGCGGCGTCCGCCAATACCACCACACCACTCTGCAGAGCGGCCATGGCTATGACAAACAGGCAGGGAAGAAGAACGAGAGCAGAGGAACAGAGCGGCGCTCCT
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| CDS seq | TGTTCTTGCACTGCCTACTCCTACAATGGCAGCTGCTCACTGTGGTACAGAGACCTCATCAACCTGCAAGATGTGAGTGTCATTGGTAGCCAAGGCAGCAGCGCAGTTTTGATTCGATTGGCTGCTTCAGAATTGTCTGGACAGAAGCAAAAGCATACCAAGAAGTTGATCACTTTTTCTGTCCTTGCTACTGGTGCTGTACTACTCATGATAGCTGTTTTGGTTGTCATCTTGAGAAGAAGAATGGTGAAGGCAACAACACGAGTGGAAGGTTCCTTGATATCATTCACATACCGTGACCTGAAATCTGTGACCAAAAATTTCTCCGAGAAGCTCGGAGGAGGCGCCTTCGGTTCAGTGTTCAAAGGGTCACTGCCTGATGCAACCATGGTGGCCGTGAAGAAGCTCGAAGGTTTTCGTCAGGGGGAGAAGCAGTTTCGCTCAGAAGTGAGCACAATCGGCAACATCCAACACGTCAACCTGATTAGATTGCTCGGGTTTTGTTCAGAGAAAACTCGAAGACTACTCGTCTACGAGTACATGCCGAATGGTTCGTTGGACAAGCATCTTTTTGGAAGTAACCAACACGTCCTGAGTTGGAACACGAGGTACAAGATTGCTCTTGGAATCGCGAGGGGATTAGACTACCTCCACGAGAAATGCAGGGATTGCATAATACACTGCGACATCAAGCCAGAAAACATACTGCTCGATGGCTCGTTTGCTCCCAAGGTTGCGGACTTCGGCCTCGCCAAGCTCATGGGCCGCGACTTCAGCCGGGTGCTGACCACGTCGAGGGGCACGGTGGGGTACATCGCGCCGGAGTGGATCGCCGGCACGGCCGTGACGGCGAAGGCGGACGTGTTCAGCTACGGCATGACGCTGCTCGAGATCGTGTCGGGGCGGAGGAACGTGCAGGAGCAGGGTGGCGCGGCGGTGGACGGCCTGCTCCCGTTGCTGGCGGCGAGCACGCTCGGCGGCGGTGGCGGCGGCCGGGATGAGCTGGTCAGCGCCGTGGTGGACGGCCGTGTAGGCGTCAACGCCGACATGGGCGAGGTGGAGAGAGCATGCAGGGTGGCGTGCTGGTGCATCCAGGACGACGAGAAGGCGAGGCCGGCCATGGCGACGGTGGTGCAGGTGCTCGAAGGGCTTGTGGAGATCGGCGTCCCGCCGGTTCCGAGATCACTCCAAATCCTCGCGGACCTCGCGAATCAGTCGAATAACTTGCGGTTTTTCTCCGATTTACCGTCAAAGTGA
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| Protein seq | CSCTAYSYNGSCSLWYRDLINLQDVSVIGSQGSSAVLIRLAASELSGQKQKHTKKLITFSVLATGAVLLMIAVLVVILRRRMVKATTRVEGSLISFTYRDLKSVTKNFSEKLGGGAFGSVFKGSLPDATMVAVKKLEGFRQGEKQFRSEVSTIGNIQHVNLIRLLGFCSEKTRRLLVYEYMPNGSLDKHLFGSNQHVLSWNTRYKIALGIARGLDYLHEKCRDCIIHCDIKPENILLDGSFAPKVADFGLAKLMGRDFSRVLTTSRGTVGYIAPEWIAGTAVTAKADVFSYGMTLLEIVSGRRNVQEQGGAAVDGLLPLLAASTLGGGGGGRDELVSAVVDGRVGVNADMGEVERACRVACWCIQDDEKARPAMATVVQVLEGLVEIGVPPVPRSLQILADLANQSNNLRFFSDLPSK |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0870500 | OsNip_01t0870500-02 | Chr01 | 37745526 | 37748506 | - | RAP2018-11-26 | ||
| CDS seq | TGTTCTTGCACTGCCTACTCCTACAATGGCAGCTGCTCACTGTGGTACAGAGACCTCATCAACCTGCAAGATGTGAGTGTCATTGGTAGCCAAGGCAGCAGCGCAGTTTTGATTCGATTGGCTGCTTCAGAATTGTCTGGACAGAAGCAAAAGCATACCAAGAAGTTGATCACTTTTTCTGTCCTTGCTACTGGTGCTGTACTACTCATGATAGCTGTTTTGGTTGTCATCTTGAGAAGAAGAATGGTGAAGGCAACAACACGAGTGGAAGGTTCCTTGATATCATTCACATACCGTGACCTGAAATCTGTGACCAAAAATTTCTCCGAGAAGCTCGGAGGAGGCGCCTTCGGTTCAGTGTTCAAAGGGTCACTGCCTGATGCAACCATGGTGGCCGTGAAGAAGCTCGAAGGTTTTCGTCAGGGGGAGAAGCAGTTTCGCTCAGAAGTGAGCACAATCGGCAACATCCAACACGTCAACCTGATTAGATTGCTCGGGTTTTGTTCAGAGAAAACTCGAAGACTACTCGTCTACGAGTACATGCCGAATGGTTCGTTGGACAAGCATCTTTTTGGAAGTAACCAACACGTCCTGAGTTGGAACACGAGGTACAAGATTGCTCTTGGAATCGCGAGGGGATTAGACTACCTCCACGAGAAATGCAGGGATTGCATAATACACTGCGACATCAAGCCAGAAAACATACTGCTCGATGGCTCGTTTGCTCCCAAGGTTGCGGACTTCGGCCTCGCCAAGCTCATGGGCCGCGACTTCAGCCGGGTGCTGACCACGTCGAGGGGCACGGTGGGGTACATCGCGCCGGAGTGGATCGCCGGCACGGCCGTGACGGCGAAGGCGGACGTGTTCAGCTACGGCATGACGCTGCTCGAGATCGTGTCGGGGCGGAGGAACGTGCAGGAGCAGGGTGGCGCGGCGGTGGACGGCCTGCTCCCGTTGCTGGCGGCGAGCACGCTCGGCGGCGGTGGCGGCGGCCGGGATGAGCTGGTCAGCGCCGTGGTGGACGGCCGTGTAGGCGTCAACGCCGACATGGGCGAGGTGGAGAGAGCATGCAGGGTGGCGTGCTGGTGCATCCAGGACGACGAGAAGGCGAGGCCGGCCATGGCGACGGTGGTGCAGGTGCTCGAAGGGCTTGTGGAGATCGGCGTCCCGCCGGTTCCGAGATCACTCCAAATCCTCGCGGACCTCGCGAATCAGTCGAATAACTTGCGGTTTTTCTCCGATTTACCGTCAAAGTGA
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| Protein seq | CSCTAYSYNGSCSLWYRDLINLQDVSVIGSQGSSAVLIRLAASELSGQKQKHTKKLITFSVLATGAVLLMIAVLVVILRRRMVKATTRVEGSLISFTYRDLKSVTKNFSEKLGGGAFGSVFKGSLPDATMVAVKKLEGFRQGEKQFRSEVSTIGNIQHVNLIRLLGFCSEKTRRLLVYEYMPNGSLDKHLFGSNQHVLSWNTRYKIALGIARGLDYLHEKCRDCIIHCDIKPENILLDGSFAPKVADFGLAKLMGRDFSRVLTTSRGTVGYIAPEWIAGTAVTAKADVFSYGMTLLEIVSGRRNVQEQGGAAVDGLLPLLAASTLGGGGGGRDELVSAVVDGRVGVNADMGEVERACRVACWCIQDDEKARPAMATVVQVLEGLVEIGVPPVPRSLQILADLANQSNNLRFFSDLPSK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0870500 | OsNip_01t0870500-01 | Chr01 | 37745644 | 37748575 | - | RAP2018-11-26 | ||
| CDS seq | TGTTCTTGCACTGCCTACTCCTACAATGGCAGCTGCTCACTGTGGTACAGAGACCTCATCAACCTGCAAGATGTGAGTGTCATTGGTAGCCAAGGCAGCAGCGCAGTTTTGATTCGATTGGCTGCTTCAGAATTGTCTGGACAGAAGCAAAAGCATACCAAGAAGTTGATCACTTTTTCTGTCCTTGCTACTGGTGCTGTACTACTCATGATAGCTGTTTTGGTTGTCATCTTGAGAAGAAGAATGGTGAAGGCAACAACACGAGTGGAAGGTTCCTTGATATCATTCACATACCGTGACCTGAAATCTGTGACCAAAAATTTCTCCGAGAAGCTCGGAGGAGGCGCCTTCGGTTCAGTGTTCAAAGGGTCACTGCCTGATGCAACCATGGTGGCCGTGAAGAAGCTCGAAGGTTTTCGTCAGGGGGAGAAGCAGTTTCGCTCAGAAGTGAGCACAATCGGCAACATCCAACACGTCAACCTGATTAGATTGCTCGGGTTTTGTTCAGAGAAAACTCGAAGACTACTCGTCTACGAGTACATGCCGAATGGTTCGTTGGACAAGCATCTTTTTGGAAGTAACCAACACGTCCTGAGTTGGAACACGAGGTACAAGATTGCTCTTGGAATCGCGAGGGGATTAGACTACCTCCACGAGAAATGCAGGGATTGCATAATACACTGCGACATCAAGCCAGAAAACATACTGCTCGATGGCTCGTTTGCTCCCAAGGTTGCGGACTTCGGCCTCGCCAAGCTCATGGGCCGCGACTTCAGCCGGGTGCTGACCACGTCGAGGGGCACGGTGGGGTACATCGCGCCGGAGTGGATCGCCGGCACGGCCGTGACGGCGAAGGCGGACGTGTTCAGCTACGGCATGACGCTGCTCGAGATCGTGTCGGGGCGGAGGAACGTGCAGGAGCAGGGTGGCGCGGCGGTGGACGGCCTGCTCCCGTTGCTGGCGGCGAGCACGCTCGGCGGCGGTGGCGGCGGCCGGGATGAGCTGGTCAGCGCCGTGGTGGACGGCCGTGTAGGCGTCAACGCCGACATGGGCGAGGTGGAGAGAGCATGCAGGGTGGCGTGCTGGTGCATCCAGGACGACGAGAAGGCGAGGCCGGCCATGGCGACGGTGGTGCAGGTGCTCGAAGGGCTTGTGGAGATCGGCGTCCCGCCGGTTCCGAGATCACTCCAAATCCTCGCGGACCTCGCGAATCAGTCGAATAACTTGCGGTTTTTCTCCGATTTACCGTCAAAGTGA
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| Protein seq | CSCTAYSYNGSCSLWYRDLINLQDVSVIGSQGSSAVLIRLAASELSGQKQKHTKKLITFSVLATGAVLLMIAVLVVILRRRMVKATTRVEGSLISFTYRDLKSVTKNFSEKLGGGAFGSVFKGSLPDATMVAVKKLEGFRQGEKQFRSEVSTIGNIQHVNLIRLLGFCSEKTRRLLVYEYMPNGSLDKHLFGSNQHVLSWNTRYKIALGIARGLDYLHEKCRDCIIHCDIKPENILLDGSFAPKVADFGLAKLMGRDFSRVLTTSRGTVGYIAPEWIAGTAVTAKADVFSYGMTLLEIVSGRRNVQEQGGAAVDGLLPLLAASTLGGGGGGRDELVSAVVDGRVGVNADMGEVERACRVACWCIQDDEKARPAMATVVQVLEGLVEIGVPPVPRSLQILADLANQSNNLRFFSDLPSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.271924 | 0.415225 | 1.141171 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0436100 | RBH | 0.0 | 0.0 | 6.671132 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g65010 | SBH | 0.197253 | 0.312938 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0870500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041850 | SBH | 0.188724 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0041380 | RBH | 0.043109 | 0.0 | 0.471218 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041770 | SBH | 0.274271 | 0.0 | 0.992254 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0041240 | SBH | 0.105720 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040770 | SBH | 0.909108 | 0.0 | 1.961534 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0620800 | SBH | 2.466956 | 0.003934 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0040440 | SBH | 0.146416 | 0.0 | 0.047732 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0620700 | RBH | 1.7978335 | 0.043591 | 0.021606 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040800 | SBH | 0.106781 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040750 | RBH | 0.239868 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041000 | RBH | 2.067794 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040950 | SBH | 0.454960 | 0.0 | 0.101035 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040810 | SBH | 0.180036 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G041260 | RBH | 0.161223 | 0.0 | 0.258139 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040930 | SBH | 0.686199 | 0.0 | 0.891754 |
