Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0864000 | OGI:01110970 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:37396215-37397433 | ||||||||
| Gene Symbol | OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30 | ||||||||||
| DNA seq | AGTATATGATTACACCACCACGGCGCCACGCGCGCGCATCATTACACATCACGTACATGGGCATATGGCGTGTCATTACATCAAGCAGATCAAGCTGCTGGAGCTAATTAATGGTGCATTTTGCACGGTCTTTGTGCTTTGGTTTCAGCAGATCGAAGACCGTTGGAAATGCACCACATCACGCTGGGATCTCTGTTAATAACCTCTCCCAACCATGAACTACGTACACCATGTAGATAGTTAACAAACTGAGGCGACAGACACGCTATCAATAGCGCTGGTAACAAGTACACTAGTAATATAGCTAGTGGTTAACACGATTAAGAAGTATGGCGTGCATGGTGGCGTCGCGTTGAAACTTGGCTAGAACTGGCAGGGGGACGGCGGGGAGAAGAGGCCGTTGCGAGTCCAGAGGTCGGCGAAGGCGTGGAGGATGAGAGGGTGGTGGCGCGGCGAGTTGAGGGAGAGGAACTGATGGAGGAGGTCGTTGAGGTCGTCCCACGCGTAGATCTCCTTCTCCACCACCATCTGCACCATCGACTCCCGGAAGTCCTCGTACGGCTCCGCCGACTCCACCGCCACAGCCACGCTCTCCTTCGCCACGCGCCGGTACGGCGCCTGCTCCTGCAGCTGCTGCTGCTCGTCGTCGTGGCCGCCGACATCGCCGCCCCGAGCGAAGGAGGTGGCGCCGGCCCGCCTCCGCCGCCGACGCTGCTGCCTCCGCCTCCGCCTCGTCTCCAGCTGCTCCTGCTCCTGCTGCGCCGCCGCCGGCTCCTCGAACAGCGAGTTGGTGGTGAACGACGCGGGGCCCCACGAGGAGTCGGTGGAGGTGGCCGTGCCGGCGCCCCCGGTCGTGGCCGTGAACGCCGTGGTCGTCGACGTGGAGGAGGCGTTGGGCGACTTGGGCTTGCTACCGCCGCGGCGGAACGACGAGGACGACGACGAGGAGAAGATGGAGAACAGCTTCGGCCGGCGGCAGTTGCAGCCGATGTCCACCACCGGCGGCTGCCGCAGCGAGAAGCTGCCCCTCCTTGACGACCTGCCCGACATGGACAATGCCACTGGTGTACCTCTAAGCTCAATAGCCTTGCACTCCTGCACTCACTGCAGAAGCCAATGCAGCTCAGCTCAGCTAAGCCAGTGAGAGCGACGTGTGCGCGGCGAGACAGTGAGAGCTAAGCTCGGAGAGAGTGAGTTGAGTTCTTGGAGCTTGGAGCTG
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| CDS seq | ATGTCGGGCAGGTCGTCAAGGAGGGGCAGCTTCTCGCTGCGGCAGCCGCCGGTGGTGGACATCGGCTGCAACTGCCGCCGGCCGAAGCTGTTCTCCATCTTCTCCTCGTCGTCGTCCTCGTCGTTCCGCCGCGGCGGTAGCAAGCCCAAGTCGCCCAACGCCTCCTCCACGTCGACGACCACGGCGTTCACGGCCACGACCGGGGGCGCCGGCACGGCCACCTCCACCGACTCCTCGTGGGGCCCCGCGTCGTTCACCACCAACTCGCTGTTCGAGGAGCCGGCGGCGGCGCAGCAGGAGCAGGAGCAGCTGGAGACGAGGCGGAGGCGGAGGCAGCAGCGTCGGCGGCGGAGGCGGGCCGGCGCCACCTCCTTCGCTCGGGGCGGCGATGTCGGCGGCCACGACGACGAGCAGCAGCAGCTGCAGGAGCAGGCGCCGTACCGGCGCGTGGCGAAGGAGAGCGTGGCTGTGGCGGTGGAGTCGGCGGAGCCGTACGAGGACTTCCGGGAGTCGATGGTGCAGATGGTGGTGGAGAAGGAGATCTACGCGTGGGACGACCTCAACGACCTCCTCCATCAGTTCCTCTCCCTCAACTCGCCGCGCCACCACCCTCTCATCCTCCACGCCTTCGCCGACCTCTGGACTCGCAACGGCCTCTTCTCCCCGCCGTCCCCCTGCCAGTTCTAG
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| Protein seq | MSGRSSRRGSFSLRQPPVVDIGCNCRRPKLFSIFSSSSSSSFRRGGSKPKSPNASSTSTTTAFTATTGGAGTATSTDSSWGPASFTTNSLFEEPAAAQQEQEQLETRRRRRQQRRRRRRAGATSFARGGDVGGHDDEQQQLQEQAPYRRVAKESVAVAVESAEPYEDFRESMVQMVVEKEIYAWDDLNDLLHQFLSLNSPRHHPLILHAFADLWTRNGLFSPPSPCQF |
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| Function | Transcription repressor OFP8 [UniProtKB/Swiss-Prot:Q94CV1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0864000 | OsNip_01t0864000-01 | Chr01 | 37396215 | 37397433 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCGGGCAGGTCGTCAAGGAGGGGCAGCTTCTCGCTGCGGCAGCCGCCGGTGGTGGACATCGGCTGCAACTGCCGCCGGCCGAAGCTGTTCTCCATCTTCTCCTCGTCGTCGTCCTCGTCGTTCCGCCGCGGCGGTAGCAAGCCCAAGTCGCCCAACGCCTCCTCCACGTCGACGACCACGGCGTTCACGGCCACGACCGGGGGCGCCGGCACGGCCACCTCCACCGACTCCTCGTGGGGCCCCGCGTCGTTCACCACCAACTCGCTGTTCGAGGAGCCGGCGGCGGCGCAGCAGGAGCAGGAGCAGCTGGAGACGAGGCGGAGGCGGAGGCAGCAGCGTCGGCGGCGGAGGCGGGCCGGCGCCACCTCCTTCGCTCGGGGCGGCGATGTCGGCGGCCACGACGACGAGCAGCAGCAGCTGCAGGAGCAGGCGCCGTACCGGCGCGTGGCGAAGGAGAGCGTGGCTGTGGCGGTGGAGTCGGCGGAGCCGTACGAGGACTTCCGGGAGTCGATGGTGCAGATGGTGGTGGAGAAGGAGATCTACGCGTGGGACGACCTCAACGACCTCCTCCATCAGTTCCTCTCCCTCAACTCGCCGCGCCACCACCCTCTCATCCTCCACGCCTTCGCCGACCTCTGGACTCGCAACGGCCTCTTCTCCCCGCCGTCCCCCTGCCAGTTCTAG
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| Protein seq | MSGRSSRRGSFSLRQPPVVDIGCNCRRPKLFSIFSSSSSSSFRRGGSKPKSPNASSTSTTTAFTATTGGAGTATSTDSSWGPASFTTNSLFEEPAAAQQEQEQLETRRRRRQQRRRRRRAGATSFARGGDVGGHDDEQQQLQEQAPYRRVAKESVAVAVESAEPYEDFRESMVQMVVEKEIYAWDDLNDLLHQFLSLNSPRHHPLILHAFADLWTRNGLFSPPSPCQF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0440900 | RBH | 0.0 | 0.675777 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64430 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0864000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041300 | RBH | 0.0 | 0.0 | 1.126079 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040830 | RBH | 0.0 | 0.0 | 0.226592 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041200 | RBH | 0.0 | 0.0 | 0.470241 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040240 | RBH | 0.0 | 2.436239 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0615300 | RBH | 1.257781 | 1.7249155 | 3.2346355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039920 | RBH | 0.0 | 0.227837 | 0.039708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0614500 | RBH | 1.2230415 | 0.823487 | 9.6826815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040230 | RBH | 0.0 | 4.184678 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040470 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040430 | RBH | 0.0 | 0.339101 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040740 | RBH | 0.0 | 0.631697 | 0.252020 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040410 | RBH | 0.0 | 0.0 | 0.0 |
