Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0863300 | OGI:01110860 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:37358205-37359558 | ||||||||
| Gene Symbol | MYB | ||||||||||
| DNA seq | GCAGCGAACCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACGCCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGTTTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGGCATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCGGTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTACCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGCCGTCGACGCCCCCGGGTCCTGGGACGATAACGACGGCAACGACCGCCGCGGCGGCGGCGGCAAGCCCCGCGGCGAGGAGCGGCGCCGCGGCGTACCCTGGTCCGAAGACGAGCACAGGTACGGACGGAAGCACACCTCAAACCCTCGTCTCCTTCCCTTCCCTCCTCCTCCCCTGCTCGTCTCTGTTCCAGAGGCTTCTCGATTTTTCTCGCGATCTTTTCCGCATTGCTTCGTCAAAGCCGAGAGAAACCAACAAACTCTTCCCAGCTGGCAGATGGCCCCCACCTGCCAGCCACCCCCCCTCAATCGCAACCGCCTTTCCCGTGTAAATTCACTTCGTTTTGCTCCACCATGCGTGTGTGTGCAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCCCTTTCTTTGCAACTCTTTGGATTAAGTGAAACAAGCAAGGGGTAGGCGATGACGTGTACATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGGGCTCTCTGATCCATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGCTCCGGTCGGCACACGGTTTGGGCTTTAGGTTTTTCAGCATTAATTAGGATTAGCTAAGTCAAGGACTAATGGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGATGCAGACGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTGATGAATGATGCTGTCGAAATCATTTTACATAGTC
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| CDS seq | ATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCGGTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTACCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGCCGAGCGGCGCCGCGGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAAGAGCATCCATGACATCACCACCCCTTGA
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| Protein seq | MDLYGAAAGGGPVARRPWSKVEDKVFESALVLCPEDVPDRWALVAAQLPGRTPQEALEHYQVLVADIDLIMRGAERRRGVPWSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKYFIRQANAGARDSKRKSIHDITTP |
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| Function | Transcription factor DIVARICATA [UniProtKB/Swiss-Prot:Q8S9H7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0863300 | OsNip_01t0863300-01 | Chr01 | 37358205 | 37359556 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCGGTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTACCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGCCGAGCGGCGCCGCGGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAAGAGCATCCATGACATCACCACCCCTTGA
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| Protein seq | MDLYGAAAGGGPVARRPWSKVEDKVFESALVLCPEDVPDRWALVAAQLPGRTPQEALEHYQVLVADIDLIMRGAERRRGVPWSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKYFIRQANAGARDSKRKSIHDITTP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0863300 | OsNip_01t0863300-02 | Chr01 | 37358210 | 37359558 | + | IsoSeq | ||
| CDS seq | ATGGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGATGCAGACGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTG |
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| Protein seq | MGFDVATSCLGLVDADEDVTVNMGFVLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.442095 | 0.455643 | 1.453778 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0442400 | RBH | 0.0 | 0.0 | 1.283261 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64360 | RBH | 0.287459 | 0.294660 | 0.336706 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0863300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041250 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040780 | RBH | 0.0 | 3.764520 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041150 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040190 | RBH | 0.000000 | 0.0 | 1.989021 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0614600 | RBH | 1.729393 | 20.399999 | 53.1525345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039870 | RBH | 0.0 | 0.281208 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0613900 | RBH | 3.618763 | 22.8023215 | 0.74751 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040220 | RBH | 0.0 | 0.181771 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040180 | RBH | 0.111710 | 7.962276 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040420 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040380 | RBH | 0.0 | 0.000000 | 0.202471 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040240 | RBH | 0.0 | 4.865502 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040690 | RBH | 0.0 | 0.000000 | 0.622108 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040360 | RBH | 0.0 | 17.383684 | 0.690338 |
