Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0856850 | OGI:04044150 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:37019957-37020241 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATACCTAGATTTTATTCATGAATTAACGAAAATGTGCAAGAGCTCTATTTGCCTTTGCCATTCTATTCTATGGGTCAGCTTGCATTTTGCGTATGACACCCCCACCCTCTTTAGCAGCATCTACTAACTCGGAACTTAATTTAAAAGCCATATTTTGACCCAGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAATGATCTCCCTTATCTATATCCTATTCAATCAGAACTTTCCGCATCGATCCTTTTTATTACGTCTTGTTTTTACTCCTATATT |
||||||||||
| CDS seq | GGGAGATCATTTGCCATTCGTTGGTTATTAGAAGCATCCCAAAAGCGTCTGGGTCAAAATATGGCTTTTAAATTAAGTTCCGAGTTAGTAGATGCTGCTAAAGAGGGTGGGGGTGTCATACGCAAAATGCAAGCTGACCCATAG |
||||||||||
| Protein seq | GRSFAIRWLLEASQKRLGQNMAFKLSSELVDAAKEGGGVIRKMQADP |
||||||||||
| Function | 30S ribosomal protein S7, chloroplastic [UniProtKB/Swiss-Prot:P62733] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0856850 | OsNip_01t0856850-00 | Chr01 | 37019957 | 37020241 | - | RAP2018-11-26 | ||
| CDS seq | GGGAGATCATTTGCCATTCGTTGGTTATTAGAAGCATCCCAAAAGCGTCTGGGTCAAAATATGGCTTTTAAATTAAGTTCCGAGTTAGTAGATGCTGCTAAAGAGGGTGGGGGTGTCATACGCAAAATGCAAGCTGACCCATAG |
|||||||
| Protein seq | GRSFAIRWLLEASQKRLGQNMAFKLSSELVDAAKEGGGVIRKMQADP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.332311 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g024339T | SBH | 89.334984 | 81.793228 | 69.047310 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16856 | SBH | 85.850304 | 75.994789 | 23.577415 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0856850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007601 | SBH | 24.327187 | 26.509775 | 47.438408 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036000 | RBH | 55.749451 | 37.604359 | 90.324532 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015520 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015360 | SBH | 27.466640 | 1.751280 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007700 | SBH | 642.750610 | 142.245651 | 482.475433 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0087500 | SBH | 643.9234925 | 248.8195265 | 125.2882385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006563 | SBH | 106.682320 | 13.328255 | 56.469986 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227100 | SBH | 1844.0178225 | 406.696121 | 218.275543 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010850 | SBH | 469.095734 | 172.553024 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0019011 | SBH | 21.999170 | 2.360054 | 14.602023 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007834 | SBH | 63.151421 | 57.804279 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010710 | SBH | 1.467540 | 0.000000 | 1.791895 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
