Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0844900 | OGI:01108280 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:36287167-36289644 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGTCAGAGGCGCGAATCTGCTGGGCCCCGCCACGGCGGCAGAGCAGAGGGAGAGGCCACCGGGACCCACCCGGACATAGGTTATGTTATCCGCTCGCGGCGGCCGGCCCCACGACGCCGACGCGCCATTGCCCTCGTCCTCTTCCTCTTCCTCTTCCTCGTCGTCGTCGTCGCCGAGCCGTCGCATGGTGGACGCCGCTGCGGCCTCCGGGGACGCGTGCGGCCGCGTGACGGAGTGGGAGACCGGCCTGCCGGCTCCAGGCGAGATGACGCCGGTCTCGCACCAGCTCGTCCCGCCGGCGCTCGCCGCCGCCTTCGGGATCGACCTCGCGGCCGTGGGCGTGCTCCTCCCCTCTCCCTCCGTCGACTCCCCTGTCTCCCACCTCTTCTTCCCCGTCGACGAGGACGACGACGAGGATGAGGAGGGGGAGGGCGAGGGGGGTAACGATGACGCCCCCGCCGCCGCCGCCGCGGGCGGCGGCGGCGGGAGGTGCGGGAAGAAGGCGAGGATGGTGTGGACGCCCGAGCTGCACCACCGGTTCGTCGAGGCGGTGGCGCACCTCGGCGAGAAGGGCGCCGTGCCCAAGGCCATCGTGCGCCTCATGAACGTCGACGGCCTCACCCGCGAGAACGTCGCCAGCCACCTCCAGAAGTACCGCCTCTACCTCAAGCGCACGCGCGTCGCCGCCACGCCGCCTCCTTCTCCACCACCACCTCCTCCTCCTCCTCCGCCCCTGCCGCCGGCGATGTACGTCCCCTGCTTCGCCGCGAAACCACCTCTCGACGCAGCTAACCGCAGCGATTCCCCTCCTTCCAGAACCTCGGACGCAACGACTAAGCAGTAAGCTTTATATTTTGCAAATTTTTTTCCCCAAAAGATAGCCAAAATCAGATAGTACGTTTTTTTTCCTTTTTTTTTCTCATATTTTCGAGGATCCAAGTAGATATATTGAGTATTTAATTTCGTCAGGAATCAAGTGAAACCAATCAAAGAGGTACAATATATTGAACTCCTGTCGTCTGCAAAATCGAAATTTGGCTTACCGTCCGATGGCAAGTTGAGGGATAGTACATTTCAAGTACAGTTATGCACATATCGGGAACAAGATATAGACCACACTAAAATGCCGCTCCTTGCAAAAATTTATCAAACCATTGCATATATTAGTTTTCTCTTGGTGATAGAGTTCATTCTTTTCGGTACCAGTGTTGTCCTCCTGGCGAAAATGTTTTTAGCCACAGACATCCTTGGGCCGTTTAGCTAGAATTACTCTCTTTTTTTTTTCTCTGCGCTTGATCCGTATAGAATGTTTGTTGTTTATACTTTTGTAAATATAATACTTACTACTAGTTACGAGTACTATATTATATTAAAAAAAACTTAACGTTTACATGTCTTCCTTCTTTCTTCTGTAACTTAAAAGCCAACTTTTATGTTTGGCATACATATCCATTGTTGTCGCAACCAAAATTCATTAGTTAGATAGCAAAATATAGTAGTTTCTGTTTTCAGTAACGCGATGATAGACTATTGAAAGCAACTTTATGCTCACACCACCTTCCCTTTAAGAGCAATTTAGGTATTTAAGTTCTTTGAAGGAACTGCTGTAATGATACCCAGTTGATGATTGAATGGTGGTGGGGTTATCTGTAATGTGCTTCCTTGAATCAGAAGACTTGGGTATATGGTTAGGAGTACTTCCCTCCCTTGCCACCACCTTGATGTTGAAATGGACTGCCCATTTCAATGATTATTTGATGCTTTCTGGGGCAATCAATCATTGTTAGAGGAATTATTTGTTCCTAGCATGATTTATACTTTAATATAATTAATATTAGTAAAGGTCAGCACTATGTTAATTCCATGGTTTGGGGGTTCTGGCTTCTAGCAGTATTCCCCACATTCATGGAGCTAGCAAAGGCATATGTCTAACCTTTTACTATGTGTGTTCACTCTTAATAGTTGATACAGTTTCTGAATTGTTTCCTCGTTTTATTCTAACTGGTTAGCTAGCTCAAGGCTAGAGAAGGAAATGCACCAAGAGTGAATTATATTCAGAAGTTGTGTCTCTTAAGAATTAGGGGACAGAACATACAATATTTTTGGATCATTTCAAGTGCATGCTTTCCATGCATGCTCCCATCAAAAGGGATAACGAGACTTGTCCACGAGGCTACGACGCAAAACTCGGCTAAAATAAATATGGAAATGCTGCTCATATCCAAGAACGGCCTCAGGAAAGATGCAAAGTTTTTTTCTGTGTGAGCTGCTAATGCTCGAGGTATTGTCTGAAGGCTACAGGCACAATAAGGTTTACCAAAGGAATTGTAATTAGGTTTCCTCTGATCTAGATTCAGTTTCAAATTCATGCAGCGTGCTGTATCAAATGCTGCCTAGATGTAACATCATTTTTCCTCATCATGTATGTGTAAGATGCTACTCTTTCTAACCTGGTGACATCGGCAAAGCTGCTCCTCA
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| CDS seq | ATGGTGGACGCCGCTGCGGCCTCCGGGGACGCGTGCGGCCGCGTGACGGAGTGGGAGACCGGCCTGCCGGCTCCAGGCGAGATGACGCCGGTCTCGCACCAGCTCGTCCCGCCGGCGCTCGCCGCCGCCTTCGGGATCGACCTCGCGGCCGTGGGCGTGCTCCTCCCCTCTCCCTCCGTCGACTCCCCTGTCTCCCACCTCTTCTTCCCCGTCGACGAGGACGACGACGAGGATGAGGAGGGGGAGGGCGAGGGGGGTAACGATGACGCCCCCGCCGCCGCCGCCGCGGGCGGCGGCGGCGGGAGGTGCGGGAAGAAGGCGAGGATGGTGTGGACGCCCGAGCTGCACCACCGGTTCGTCGAGGCGGTGGCGCACCTCGGCGAGAAGGGCGCCGTGCCCAAGGCCATCGTGCGCCTCATGAACGTCGACGGCCTCACCCGCGAGAACGTCGCCAGCCACCTCCAGAAGTACCGCCTCTACCTCAAGCGCACGCGCGTCGCCGCCACGCCGCCTCCTTCTCCACCACCACCTCCTCCTCCTCCTCCGCCCCTGCCGCCGGCGATGTACGTCCCCTGCTTCGCCGCGAAACCACCTCTCGACGCAGCTAACCGCAGCGATTCCCCTCCTTCCAGAACCTCGGACGCAACGACTAAGCAGTAA
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| Protein seq | MVDAAAASGDACGRVTEWETGLPAPGEMTPVSHQLVPPALAAAFGIDLAAVGVLLPSPSVDSPVSHLFFPVDEDDDEDEEGEGEGGNDDAPAAAAAGGGGGRCGKKARMVWTPELHHRFVEAVAHLGEKGAVPKAIVRLMNVDGLTRENVASHLQKYRLYLKRTRVAATPPPSPPPPPPPPPPLPPAMYVPCFAAKPPLDAANRSDSPPSRTSDATTKQ |
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| Function | Transcription factor BOA [UniProtKB/Swiss-Prot:Q9LTH4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0844900 | OsNip_01t0844900-01 | Chr01 | 36287282 | 36289641 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTGGACGCCGCTGCGGCCTCCGGGGACGCGTGCGGCCGCGTGACGGAGTGGGAGACCGGCCTGCCGGCTCCAGGCGAGATGACGCCGGTCTCGCACCAGCTCGTCCCGCCGGCGCTCGCCGCCGCCTTCGGGATCGACCTCGCGGCCGTGGGCGTGCTCCTCCCCTCTCCCTCCGTCGACTCCCCTGTCTCCCACCTCTTCTTCCCCGTCGACGAGGACGACGACGAGGATGAGGAGGGGGAGGGCGAGGGGGGTAACGATGACGCCCCCGCCGCCGCCGCCGCGGGCGGCGGCGGCGGGAGGTGCGGGAAGAAGGCGAGGATGGTGTGGACGCCCGAGCTGCACCACCGGTTCGTCGAGGCGGTGGCGCACCTCGGCGAGAAGGGCGCCGTGCCCAAGGCCATCGTGCGCCTCATGAACGTCGACGGCCTCACCCGCGAGAACGTCGCCAGCCACCTCCAGAAGTACCGCCTCTACCTCAAGCGCACGCGCGTCGCCGCCACGCCGCCTCCTTCTCCACCACCACCTCCTCCTCCTCCTCCGCCCCTGCCGCCGGCGATGTACGTCCCCTGCTTCGCCGCGAAACCACCTCTCGACGCAGCTAACCGCAGCGATTCCCCTCCTTCCAGAACCTCGGACGCAACGACTAAGCAGTAA
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| Protein seq | MVDAAAASGDACGRVTEWETGLPAPGEMTPVSHQLVPPALAAAFGIDLAAVGVLLPSPSVDSPVSHLFFPVDEDDDEDEEGEGEGGNDDAPAAAAAGGGGGRCGKKARMVWTPELHHRFVEAVAHLGEKGAVPKAIVRLMNVDGLTRENVASHLQKYRLYLKRTRVAATPPPSPPPPPPPPPPLPPAMYVPCFAAKPPLDAANRSDSPPSRTSDATTKQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0844900 | OsNip_01t0844900-02 | Chr01 | 36287167 | 36289644 | + | IsoSeq | ||
| CDS seq | CGTCAGAGGCGCGAATCTGCTGGGCCCCGCCACGGCGGCAGAGCAGAGGGAGAGGCCACCGGGACCCACCCGGACATAGGTTATGTTATCCGCTCGCGGCGGCCGGCCCCACGACGCCGACGCGCCATTGCCCTCGTCCTCTTCCTCTTCCTCTTCCTCGTCGTCGTCGTCGCCGAGCCGTCGCATGGTGGACGCCGCTGCGGCCTCCGGGGACGCGTGCGGCCGCGTGACGGAGTGGGAGACCGGCCTGCCGGCTCCAGGCGAGATGACGCCGGTCTCGCACCAGCTCGTCCCGCCGGCGCTCGCCGCCGCCTTCGGGATCGACCTCGCGGCCGTGGGCGTGCTCCTCCCCTCTCCCTCCGTCGACTCCCCTGTCTCCCACCTCTTCTTCCCCGTCGACGAGGACGACGACGA
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| Protein seq | RQRRESAGPRHGGRAEGEATGTHPDIGYVIRSRRPAPRRRRAIALVLFLFLFLVVVVAEPSHGGRRCGLRGRVRPRDGVGDRPAGSRRDDAGLAPARPAGARRRLRDRPRGRGRAPPLSLRRLPCLPPLLPRRRGRRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.103451 | 0.0 | 1.152041 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0488600 | RBH | 1.149337 | 2.822825 | 0.287732 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g62660 | RBH | 0.060789 | 0.184775 | 0.257686 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0844900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040080 | RBH | 0.0 | 0.0 | 1.489226 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039540 | RBH | 0.0 | 5.775544 | 0.489066 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0039950 | RBH | 0.0 | 3.490680 | 1.173237 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039410 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039030 | RBH | 0.0 | 2.887543 | 3.818672 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0599700 | RBH | 0.1715875 | 6.769431 | 2.439751 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038720 | RBH | 0.0 | 0.135774 | 0.214787 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0597300 | RBH | 0.295717 | 5.8348905 | 1.121139 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039010 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039240 | RBH | 2.533042 | 3.304840 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039240 | RBH | 0.000000 | 0.128210 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039570 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039250 | RBH | 0.0 | 12.931672 | 0.946820 |
