Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0838900 | OGI:01107520 | 2/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:35984258-35987592 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTATCAAAACCGACCAATCATCGAAAGTAACCAAAATTCGCATTACAATTCTATCACCTGTTGGTATGTTTCATCTCATGTCAAGGTAAACAAAAAGAGACAAAAGTAATCAAGCAAAGCGACCAGAATCACGCCGGCAAACTGCTGCCAATCCTGCTCACATACTGGCACAGCTGGTCCCTCAGCGCGGCCGCGCCGACGTCGGCGACATCGCTGAACTGCTGCCGGTAGCCGTCGTCGTGGTTGTGCGACGGCGGCATGCCGCCCCTCGCCGCGTCCTCGAGGTCGATCATGATGTTGGTGAGCAGGCAGCAGACGTAGATGATCCTCGGCAGCCGGTGCTTGTCCGGCCTCCACAGCTCTCCCTTGAGAACCTGCCACCTCTCCTTCAGCTTGGCCAGAGCACCCTGCACCACCATGATCGTCGCGGCGTGCCGCTTGTTGAAGTCGGCTTTCGCCGGAGATAGATCCTTCTCACGGTATGGAGTCATCAGCCAGGGAAGGAGAGGGTAGCTTGCATCCCCAAGAATGTAGTCTCTGACCACTGACCCAGCTGGCTCTCCTGGAAGCTCCGTTTGTCCGTCCAGCCTCGCGCCTTTCTCGCAGAGCCTGTAGAATCCTGAGGTGCGCAGGATGCACGAGTCATTCAAGCTGCCAGGCCAGCCACTGACAACGTCTCTGAACCGCATGTCGGCATCGACGATGGCCTGCAGGACCATGCTGTTCCTGTTCTCGCCGTCGAGCCAGACATTGCTGTTAGGCTGAGCTGAAGAGCACATGAGGATGTGCGTTGTGTCTATGGCGCCGCAGCAGTTGGGGAGGCCCTGAATCTTTTCAAACTTAGATTTGACGGTTGCCATCTCCTCAGGAGTAGGCCACTTAAGATGATTGGCAGCGCGCTCCTCCAAGGCCTCAATAAACTTCCAAGTGATGTTTGAGATAGCTGAGTGGTTCATCCCGAAGCGGTTCCCTATGCTCAAAAGCGACTCACCGGTGGTCAATCTTAACAGAGCAACACCTACTTGATCTTCCACGCCTAGAATTGCCTTGTCTCCAAACCTGAAATTTCTGAAACTTTGTGTCTTTCTTGTGAAGTCCCCACTAATCAGAGAGCAAAGGTAGTCAAAGGTCTTCCTCGACATCTTGAAGACGGACTCAAAGTTTTGGCAGTCTTTGGAAAATTGTCCTGTGGACATAAGACATAGTCAAAGATCGCAGTGGCGTTAGTCGAGCATATCATAAATTATTTGGCAGGGAACTTGAAAGCATAAAAGGGAAAATTCAGATATATTGAAATTCAAAGAATTCGATTCGTTCTCCTCATATTGAAATTAGAAGGGCAGAGGAAGAAACGGGGTAAACCTTATGATAGCAAATTTAACAGAAGAGATTCAAATCTAATAGAACATGGTCCACAAGTGTCGAGAACAGAAAATGAACAATACTAGCAATATCATGAATGAACTGAGCATATTATATGAGAAAAGGTTTAGCTGTTTTGGCAATACAGTGAATATCGATTCAAAATTTAGAAGAATCATCAGTAGAAGGGACACTGCCCTTGTTAAATAGATGACTAGAATGCTATCATTCCTGTATCTACCTTCTTAAATCACTCACACTTGATGCTCAGGTTTGTACTAATTGTTCAAAATGTCACTCTTGTCAAAATTTGAAAATTCTAACAATGTCACTTGTCATAAAGGATAGGTAGGCATTCAAAACCAATGTTTTCCAGTGTTTCAGATCATTTCAGCAATCAGGGAAGCTCAGAATAAATATCACTAACGACTTCAAGAATTCAAAAATATATTGTCTATGTTTTTGTAAGAACATGTATGATCAAAATAAGAATACAGCAGCCAGACAAATAGCTATACAAATCTACTTTATTTGTTCAAGCTAAATTGTACTTGTATGGGCTGCTTCACCCAATGATCTCTGAAAGACTCACTTGAACACCATACAGAGAGGCCTAATGAATCTATACTCCTGGATGATCTATCACATTGAATTATAAAACAGTATTTGCTGTGGTACCAGGTACTATAAGATTCAAGAAACTTATCGTGGGAATCCATTTCTCGGAACACATCATTCAACCGACCTACCTTTGAGCCACACTAATCATTTTCTGGATTTGCCAGTCAATCTATTGGAACCCAATCCCCTCACGTGTTTCCTTTAAAAAAAAATATTAACAGCCAATCGGATGATGAAATTGGGGAAACTACCTGTGAACAGATGAGCTAATTACTTAAAAAAAACGCATATGCTACACTTTACAATTCTGGACTGAACAGGCAAAGCAATTCGATGGCAAGTACAGACTAATTGTTCTCCGGGAGATGTTGTTTTCCCCTTAGCAAAATGAAGTTACTTCATAAGTTGCAAAGAGAAAAGAAGTTAGTTCTTGCAATGTCAAGGCATGAACAGTCAACCAACCTATTCTGAATTAGATTGACACAATGGGCAAAAGCCAACAGCACCCGTAAATTTCTAGCCCCAAAATACCATTGCACCAAAGGCTTCATAGATCTGGATTGGAGAAGGAAACAACAAAACCACAGATGGCACAACCAATTCTTCTCCCAAACACGGTCTACTCGATCGATACCCATCAGAGCAACGGCATTCACAAGCTTTTCCTTGCTCATACCCTCGGAGCAATCGACATCCATGGTGGTCTCCAATCCAGAACATCCCCCCCGCCCGAGATGGTTCGCTGCCTCGGAGCACCGTACAATCCCACCACCTCCAAAACAAAGCCCACCGAAACAGCGGATTTGCAACAGTAACCACCCTGATTAAGGAGCACTGCACGGGCGGATTAAGCGACCGCATCGAACAGATACCGCGCAGGCACGAACAGTGCAAATTCAACGGCGGGTCTCCCTGATCTAACCCCGCGGAATCCGCCCGCGAACAATCCCAAGCGCGCGAGGGGGTTAAGCACGCATTACTCGCCGCCGACGAGGGTTACGGTGCGCGGGCGCGAGGTTTACAGCGAGCCAAGGAACCAGGGAACGGGCATGGACATGGTTAAGGACGAGGAGCACAGTGCTCGCAAACAGGGAAGAGACGAACGAACGAACGGCAAGACGTATACCTGCTGCAAGCCTGCGGGCGAAGCCGTCCCACCAATCCCCGCCGGGCGCCGGCGCCGGCATCGCCTGCCCCGCCGCCGGCAACGCCTTCTCCGGCTGCCGCTTCCGCCGCTTGGCTCCCCTCAGTGGTGCCATGACGAGACGAGACGAGAGCGACGCGAACGCGAACCCCGGAAGGAGGAGAAGAGATCAAGAAAAGAAAAAAAAAACGAGCAAACCAACCAAAG
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| CDS seq | ATGGCACCACTGAGGGGAGCCAAGCGGCGGAAGCGGCAGCCGGAGAAGGCGTTGCCGGCGGCGGGGCAGGCGATGCCGGCGCCGGCGCCCGGCGGGGATTGGTGGGACGGCTTCGCCCGCAGGCTTGCAGCAGGACAATTTTCCAAAGACTGCCAAAACTTTGAGTCCGTCTTCAAGATGTCGAGGAAGACCTTTGACTACCTTTGCTCTCTGATTAGTGGGGACTTCACAAGAAAGACACAAAGTTTCAGAAATTTCAGGTTTGGAGACAAGGCAATTCTAGGCGTGGAAGATCAAGTAGGTGTTGCTCTGTTAAGATTGACCACCGGTGAGTCGCTTTTGAGCATAGGGAACCGCTTCGGGATGAACCACTCAGCTATCTCAAACATCACTTGGAAGTTTATTGAGGCCTTGGAGGAGCGCGCTGCCAATCATCTTAAGTGGCCTACTCCTGAGGAGATGGCAACCGTCAAATCTAAGTTTGAAAAGATTCAGGGCCTCCCCAACTGCTGCGGCGCCATAGACACAACGCACATCCTCATGTGCTCTTCAGCTCAGCCTAACAGCAATGTCTGGCTCGACGGCGAGAACAGGAACAGCATGGTCCTGCAGGCCATCGTCGATGCCGACATGCGGTTCAGAGACGTTGTCAGTGGCTGGCCTGGCAGCTTGAATGACTCGTGCATCCTGCGCACCTCAGGATTCTACAGGCTCTGCGAGAAAGGCGCGAGGCTGGACGGACAAACGGAGCTTCCAGGAGAGCCAGCTGGGTCAGTGGTCAGAGACTACATTCTTGGGGATGCAAGCTACCCTCTCCTTCCCTGGCTGATGACTCCATACCGTGAGAAGGATCTATCTCCGGCGAAAGCCGACTTCAACAAGCGGCACGCCGCGACGATCATGGTGGTGCAGGGTGCTCTGGCCAAGCTGAAGGAGAGGTGGCAGGTTCTCAAGGGAGAGCTGTGGAGGCCGGACAAGCACCGGCTGCCGAGGATCATCTACGTCTGCTGCCTGCTCACCAACATCATGATCGACCTCGAGGACGCGGCGAGGGGCGGCATGCCGCCGTCGCACAACCACGACGACGGCTACCGGCAGCAGTTCAGCGATGTCGCCGACGTCGGCGCGGCCGCGCTGAGGGACCAGCTGTGCCAGTATGTGAGCAGGATTGGCAGCAGTTTGCCGGCGTGA
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| Protein seq | MAPLRGAKRRKRQPEKALPAAGQAMPAPAPGGDWWDGFARRLAAGQFSKDCQNFESVFKMSRKTFDYLCSLISGDFTRKTQSFRNFRFGDKAILGVEDQVGVALLRLTTGESLLSIGNRFGMNHSAISNITWKFIEALEERAANHLKWPTPEEMATVKSKFEKIQGLPNCCGAIDTTHILMCSSAQPNSNVWLDGENRNSMVLQAIVDADMRFRDVVSGWPGSLNDSCILRTSGFYRLCEKGARLDGQTELPGEPAGSVVRDYILGDASYPLLPWLMTPYREKDLSPAKADFNKRHAATIMVVQGALAKLKERWQVLKGELWRPDKHRLPRIIYVCCLLTNIMIDLEDAARGGMPPSHNHDDGYRQQFSDVADVGAAALRDQLCQYVSRIGSSLPA |
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| Function | Protein ALP1-like [UniProtKB/Swiss-Prot:Q9M2U3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0838900 | OsNip_01t0838900-01 | Chr01 | 35984258 | 35987592 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCACCACTGAGGGGAGCCAAGCGGCGGAAGCGGCAGCCGGAGAAGGCGTTGCCGGCGGCGGGGCAGGCGATGCCGGCGCCGGCGCCCGGCGGGGATTGGTGGGACGGCTTCGCCCGCAGGCTTGCAGCAGGACAATTTTCCAAAGACTGCCAAAACTTTGAGTCCGTCTTCAAGATGTCGAGGAAGACCTTTGACTACCTTTGCTCTCTGATTAGTGGGGACTTCACAAGAAAGACACAAAGTTTCAGAAATTTCAGGTTTGGAGACAAGGCAATTCTAGGCGTGGAAGATCAAGTAGGTGTTGCTCTGTTAAGATTGACCACCGGTGAGTCGCTTTTGAGCATAGGGAACCGCTTCGGGATGAACCACTCAGCTATCTCAAACATCACTTGGAAGTTTATTGAGGCCTTGGAGGAGCGCGCTGCCAATCATCTTAAGTGGCCTACTCCTGAGGAGATGGCAACCGTCAAATCTAAGTTTGAAAAGATTCAGGGCCTCCCCAACTGCTGCGGCGCCATAGACACAACGCACATCCTCATGTGCTCTTCAGCTCAGCCTAACAGCAATGTCTGGCTCGACGGCGAGAACAGGAACAGCATGGTCCTGCAGGCCATCGTCGATGCCGACATGCGGTTCAGAGACGTTGTCAGTGGCTGGCCTGGCAGCTTGAATGACTCGTGCATCCTGCGCACCTCAGGATTCTACAGGCTCTGCGAGAAAGGCGCGAGGCTGGACGGACAAACGGAGCTTCCAGGAGAGCCAGCTGGGTCAGTGGTCAGAGACTACATTCTTGGGGATGCAAGCTACCCTCTCCTTCCCTGGCTGATGACTCCATACCGTGAGAAGGATCTATCTCCGGCGAAAGCCGACTTCAACAAGCGGCACGCCGCGACGATCATGGTGGTGCAGGGTGCTCTGGCCAAGCTGAAGGAGAGGTGGCAGGTTCTCAAGGGAGAGCTGTGGAGGCCGGACAAGCACCGGCTGCCGAGGATCATCTACGTCTGCTGCCTGCTCACCAACATCATGATCGACCTCGAGGACGCGGCGAGGGGCGGCATGCCGCCGTCGCACAACCACGACGACGGCTACCGGCAGCAGTTCAGCGATGTCGCCGACGTCGGCGCGGCCGCGCTGAGGGACCAGCTGTGCCAGTATGTGAGCAGGATTGGCAGCAGTTTGCCGGCGTGA
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| Protein seq | MAPLRGAKRRKRQPEKALPAAGQAMPAPAPGGDWWDGFARRLAAGQFSKDCQNFESVFKMSRKTFDYLCSLISGDFTRKTQSFRNFRFGDKAILGVEDQVGVALLRLTTGESLLSIGNRFGMNHSAISNITWKFIEALEERAANHLKWPTPEEMATVKSKFEKIQGLPNCCGAIDTTHILMCSSAQPNSNVWLDGENRNSMVLQAIVDADMRFRDVVSGWPGSLNDSCILRTSGFYRLCEKGARLDGQTELPGEPAGSVVRDYILGDASYPLLPWLMTPYREKDLSPAKADFNKRHAATIMVVQGALAKLKERWQVLKGELWRPDKHRLPRIIYVCCLLTNIMIDLEDAARGGMPPSHNHDDGYRQQFSDVADVGAAALRDQLCQYVSRIGSSLPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.345240 | 0.349942 | 0.843809 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g62160 | RBH | 0.263750 | 0.582077 | 0.372886 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0838900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006560 | SBH | 0.0 | 0.0 | 2.404276 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006210 | SBH | 0.069970 | 0.0 | 0.512102 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006520 | SBH | 0.0 | 0.566940 | 1.080664 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006040 | SBH | 0.039012 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0592100 | RBH | 1.334484 | 2.476972 | 3.896353 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
