Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0828900 | OGI:01105950 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:35473695-35474333 | ||||||||
| Gene Symbol | G1L7, OsG1L7 | ||||||||||
| DNA seq | TCAGGAGGCGCTTGGTGCAGTGCCACTCCCTCCAGGTTGAGCTGTGGTAGTAGCAGCTGCACCGCCACCGCTGCCCGCGTCTCCACCACCGGCAGCTGCAGCTGCAGCAGAAGACGAGCCGGACGGCTCGACGCCGGCGGGCTGCGCCGCCTGCGAGCGCTTGCGCTTCTTCTTCTCGTACGGGATGCCGCGCGCCTTGGCCTGCGAGTCCCGCACCTCGCGGAGGTAGATCCGGACGGCGCGCGCGGCGAACGGGTTGGACTCGGGCGTGCCGCCGCTCTCCTCGTACGCGGCGCGGAGGCGGCCGATGAGCGCGTCGAGGGATCCCCACGCCTGACGCAGCGGGCACGGGCACGGCCCCGGCGGGCTGGGCTGGCCGTAGAAGGCGCACCCCGACGCGTGCACCTTGGTCTTCCCGAACTGGTCCAGGTACCTCAGGAACTCGATCACGTGCGCGCCGCTGCACCGCGCCAGCGTCAGCGGCGGCCGGTGGTTCCGCAGGTACTGCAGGAACGTGTTCCAGTCCCTCCGCTTCTGCGACTCGTACCTGCTCAGCTGCGCCGGCGGCTGCGGCGCCGCCGCCACGGCCGGCGCGCCGCCAGCCGCCGCAGAGGACGGACCGGGGCCAGACGGATCCAT
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| CDS seq | ATGGATCCGTCTGGCCCCGGTCCGTCCTCTGCGGCGGCTGGCGGCGCGCCGGCCGTGGCGGCGGCGCCGCAGCCGCCGGCGCAGCTGAGCAGGTACGAGTCGCAGAAGCGGAGGGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACCGGCCGCCGCTGACGCTGGCGCGGTGCAGCGGCGCGCACGTGATCGAGTTCCTGAGGTACCTGGACCAGTTCGGGAAGACCAAGGTGCACGCGTCGGGGTGCGCCTTCTACGGCCAGCCCAGCCCGCCGGGGCCGTGCCCGTGCCCGCTGCGTCAGGCGTGGGGATCCCTCGACGCGCTCATCGGCCGCCTCCGCGCCGCGTACGAGGAGAGCGGCGGCACGCCCGAGTCCAACCCGTTCGCCGCGCGCGCCGTCCGGATCTACCTCCGCGAGGTGCGGGACTCGCAGGCCAAGGCGCGCGGCATCCCGTACGAGAAGAAGAAGCGCAAGCGCTCGCAGGCGGCGCAGCCCGCCGGCGTCGAGCCGTCCGGCTCGTCTTCTGCTGCAGCTGCAGCTGCCGGTGGTGGAGACGCGGGCAGCGGTGGCGGTGCAGCTGCTACTACCACAGCTCAACCTGGAGGGAGTGGCACTGCACCAAGCGCCTCCTGA
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| Protein seq | MDPSGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSSAAAAAAGGGDAGSGGGAAATTTAQPGGSGTAPSAS |
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| Function | Protein G1-like7 [UniProtKB/Swiss-Prot:Q941W1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0828900 | OsNip_01t0828900-00 | Chr01 | 35473695 | 35474333 | - | RAP2018-11-26 | ||
| CDS seq | ATGGATCCGTCTGGCCCCGGTCCGTCCTCTGCGGCGGCTGGCGGCGCGCCGGCCGTGGCGGCGGCGCCGCAGCCGCCGGCGCAGCTGAGCAGGTACGAGTCGCAGAAGCGGAGGGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACCGGCCGCCGCTGACGCTGGCGCGGTGCAGCGGCGCGCACGTGATCGAGTTCCTGAGGTACCTGGACCAGTTCGGGAAGACCAAGGTGCACGCGTCGGGGTGCGCCTTCTACGGCCAGCCCAGCCCGCCGGGGCCGTGCCCGTGCCCGCTGCGTCAGGCGTGGGGATCCCTCGACGCGCTCATCGGCCGCCTCCGCGCCGCGTACGAGGAGAGCGGCGGCACGCCCGAGTCCAACCCGTTCGCCGCGCGCGCCGTCCGGATCTACCTCCGCGAGGTGCGGGACTCGCAGGCCAAGGCGCGCGGCATCCCGTACGAGAAGAAGAAGCGCAAGCGCTCGCAGGCGGCGCAGCCCGCCGGCGTCGAGCCGTCCGGCTCGTCTTCTGCTGCAGCTGCAGCTGCCGGTGGTGGAGACGCGGGCAGCGGTGGCGGTGCAGCTGCTACTACCACAGCTCAACCTGGAGGGAGTGGCACTGCACCAAGCGCCTCCTGA
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| Protein seq | MDPSGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSSAAAAAAGGGDAGSGGGAAATTTAQPGGSGTAPSAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.485467 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0472000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g61310 | RBH | 0.0 | 0.0 | 0.124969 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0828900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038860 | RBH | 0.0 | 3.181953 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038330 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038750 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0038220 | RBH | 0.0 | 0.092005 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037820 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0585900 | RBH | 0.5195215 | 2.132854 | 0.20052 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0583100 | RBH | 0.6265315 | 0.6138275 | 0.143344 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0037750 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037780 | RBH | 0.0 | 9.439864 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0038010 | RBH | 0.0 | 18.225071 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0038040 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037860 | RBH | 0.0 | 1.616768 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G038360 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0038050 | RBH | 0.0 | 0.0 | 0.0 |
