Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0822800 | OGI:01105160 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:35121625-35122986 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCAACAAATATACGGTATTTCCTCGCAAAATGATACTACTTATACGGTAATATTACAAGCCTGTACGTAACTGTAAGCGTCCTGTACCTCCTAACCTCCACAACAACTGCCCTTGCTAGCCAAGATCGAAATCGAATGGACGGTGGACTACTGTGAGTAACCTACAAACTGAACAGACGAGCGGGCCCACCCGTCATCCTCTCACAGCACCAACGTCGGAAAATATCTCACGGCCATGGGCCATGGCCTGGCCCAAGGAGAGATTTTTTTACATAGGTCCAAAACAAGAAAGGAGATTTTTTACATGGGTATGTTACACTGGGCCCACAGCGGCTGGGGGAAGCGGGGGCCCACCTGCCCCGGTCACGCGATGACCACCGTCACGGCGGCGGCGGCGGGGGCGTCGACCTCGCTCCCCGGCCGCCGGCTGCCCGCGGCGGCGGCGGCGGCGGTTGGTTTGTGCTTGGTGGTGGCGCCGTGGAGGACGGAGCCCCGGCACGTGGGGCAGGAGTCGTGGGAGACGAGCCACGTGTCGACGCAGCGGACGTGGAAGCCATGGCCGCAGCGCGGCAGCACGCGCACCTTCTCGCCGTCCGCGAACTCGCCGAGGCAGATGGCGCAGACCTCCGCCGCGGCGGCGGGGCTCCCTCCACCACCTCCGCCGTACACCTCGATGGGGATGCTCCTGAGCGCGCGCTTCTTGAGCCCGCCGCCGGCGCCCGCCCCCTCCACGCCGCCGCCGGCGCCTTCCCCCGTCGCCGCCCGCCGCGCCCACCGGATGATGAGCCGCGCGAGCGAGTTGAGCCCGAGCGCGAACAGCAGCGCGAAGAGCAGCGCCGCGAGGATGATCACCATGTTGGTGTCGAAGCTGGCGTCGCTGCCCCCTCCCCCGCCGCTGCTCAGTGCGTGCTGCGCCTCCCCGGCGCTCCCCGGCGACGGCGAGGCCGGCGTCCCCATGTACCAGCTCATCGACTTCGTGTGCACCCCCATGGCCTCCCCCCAACTTACTAGAACTTAGAACAACACGCTAAGCTTCCCGGCAAATTATGCGCCGAATGTACAGGTCCAGGTCAGTGGAAAAGCTACTACTACTCACCAGTTATCTCGCTCGCGAACCAATCCGTAACACAAAAGGACGTGGACGTAGTAGCGACTGCCACTAGCTAATACAAAAAGGTGAAGCTTAACTGTTGCTAAACTGTACCGATCGATCGATTGATGGAGTGAGCTAGCCAAGTACCTTCTGTGATCTCTTTCCCACACGATCGAGCTGGATTAGTATTTCGGGAGATGAGATGAGGAGGAGGAGGAGAATCAACAACAGCAAGTGGAGTTGAGCCGTAGTAGTAGTAGCAGTAGAC
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| CDS seq | ATGGGGGTGCACACGAAGTCGATGAGCTGGTACATGGGGACGCCGGCCTCGCCGTCGCCGGGGAGCGCCGGGGAGGCGCAGCACGCACTGAGCAGCGGCGGGGGAGGGGGCAGCGACGCCAGCTTCGACACCAACATGGTGATCATCCTCGCGGCGCTGCTCTTCGCGCTGCTGTTCGCGCTCGGGCTCAACTCGCTCGCGCGGCTCATCATCCGGTGGGCGCGGCGGGCGGCGACGGGGGAAGGCGCCGGCGGCGGCGTGGAGGGGGCGGGCGCCGGCGGCGGGCTCAAGAAGCGCGCGCTCAGGAGCATCCCCATCGAGGTGTACGGCGGAGGTGGTGGAGGGAGCCCCGCCGCCGCGGCGGAGGTCTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGCTGCGGCCATGGCTTCCACGTCCGCTGCGTCGACACGTGGCTCGTCTCCCACGACTCCTGCCCCACGTGCCGGGGCTCCGTCCTCCACGGCGCCACCACCAAGCACAAACCAACCGCCGCCGCCGCCGCCGCGGGCAGCCGGCGGCCGGGGAGCGAGGTCGACGCCCCCGCCGCCGCCGCCGTGACGGTGGTCATCGCGTGA
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| Protein seq | MGVHTKSMSWYMGTPASPSPGSAGEAQHALSSGGGGGSDASFDTNMVIILAALLFALLFALGLNSLARLIIRWARRAATGEGAGGGVEGAGAGGGLKKRALRSIPIEVYGGGGGGSPAAAAEVCAICLGEFADGEKVRVLPRCGHGFHVRCVDTWLVSHDSCPTCRGSVLHGATTKHKPTAAAAAAGSRRPGSEVDAPAAAAVTVVIA |
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| Function | RING-H2 finger protein ATL72 [UniProtKB/Swiss-Prot:Q9SG96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0822800 | OsNip_01t0822800-01 | Chr01 | 35121625 | 35122986 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGGTGCACACGAAGTCGATGAGCTGGTACATGGGGACGCCGGCCTCGCCGTCGCCGGGGAGCGCCGGGGAGGCGCAGCACGCACTGAGCAGCGGCGGGGGAGGGGGCAGCGACGCCAGCTTCGACACCAACATGGTGATCATCCTCGCGGCGCTGCTCTTCGCGCTGCTGTTCGCGCTCGGGCTCAACTCGCTCGCGCGGCTCATCATCCGGTGGGCGCGGCGGGCGGCGACGGGGGAAGGCGCCGGCGGCGGCGTGGAGGGGGCGGGCGCCGGCGGCGGGCTCAAGAAGCGCGCGCTCAGGAGCATCCCCATCGAGGTGTACGGCGGAGGTGGTGGAGGGAGCCCCGCCGCCGCGGCGGAGGTCTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGCTGCGGCCATGGCTTCCACGTCCGCTGCGTCGACACGTGGCTCGTCTCCCACGACTCCTGCCCCACGTGCCGGGGCTCCGTCCTCCACGGCGCCACCACCAAGCACAAACCAACCGCCGCCGCCGCCGCCGCGGGCAGCCGGCGGCCGGGGAGCGAGGTCGACGCCCCCGCCGCCGCCGCCGTGACGGTGGTCATCGCGTGA
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| Protein seq | MGVHTKSMSWYMGTPASPSPGSAGEAQHALSSGGGGGSDASFDTNMVIILAALLFALLFALGLNSLARLIIRWARRAATGEGAGGGVEGAGAGGGLKKRALRSIPIEVYGGGGGGSPAAAAEVCAICLGEFADGEKVRVLPRCGHGFHVRCVDTWLVSHDSCPTCRGSVLHGATTKHKPTAAAAAAGSRRPGSEVDAPAAAAVTVVIA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.391641 | 7.297729 | 1.061597 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0478000 | RBH | 1.509420 | 1.124083 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60730 | RBH | 6.061503 | 5.175109 | 0.263930 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0822800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038460 | RBH | 2.767394 | 3.736671 | 1.058473 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037950 | RBH | 0.276420 | 0.0 | 1.137692 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038360 | RBH | 7.020686 | 1.629722 | 3.859096 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037810 | RBH | 1.436030 | 0.029906 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037440 | RBH | 15.069350 | 0.0 | 1.914657 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0580900 | RBH | 24.52903 | 24.688511 | 8.4807565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0037130 | RBH | 2.617674 | 0.245956 | 0.098842 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0576700 | RBH | 15.058173 | 17.2313845 | 14.151647 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0037360 | RBH | 0.601226 | 0.087340 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037390 | RBH | 2.508636 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037620 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037650 | RBH | 3.107273 | 0.076555 | 0.253349 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037470 | RBH | 1.206878 | 4.416139 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037970 | RBH | 2.986358 | 0.0 | 1.027565 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037650 | RBH | 7.485021 | 11.591432 | 0.772281 |
