Basic Info
Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_01g079309C OGI:04044150 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr01:33542750-33542956
Gene Symbol -
DNA seq

ACTGGACGAAACCAAGAAATAACCCCTTATGTGCGAAATTATAGAAGATCCCCTTTAAGATCAAACAATTCCATCGAATTGAGTATGACTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCCATTCTTGCAATTGCTCAGGATACCCTCTTTTAGCTGCTAGGTCTATTTCTTAGTTCAAGATCCCTCTTACTA
CDS seq

ATGACTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCCATTCTTGCAATTGCTCAGGATACCCTC
Protein seq

MTVCVIASTIPGISMNPILAIAQDTL
Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_01g079309C OsNip_01t079309C-01 Chr01 33542750 33542956 + IsoSeq
CDS seq

ATGACTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCCATTCTTGCAATTGCTCAGGATACCCTC
Protein seq

MTVCVIASTIPGISMNPILAIAQDTL
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 54.005516 49.274395 19.696146

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g15248 RBH 15.220771 16.041243 3.643483
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0026740 RBH 43.083775 15.214581 56.358242
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0035960 RBH 64.946739 8.219375 76.830750
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0036340 RBH 57.940536 11.745196 49.684978
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0035730 RBH 32.416164 0.785085 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0007710 SBH 415.751404 59.376846 263.274261
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0226800 RBH 990.169098 239.911247 131.895042
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_09g0005050 RBH 0.000000 0.000000 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0366900 RBH 82.1535645 19.521511 12.384543
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_09g0005040 SBH 0.404326 0.514984 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_09g0004910 RBH 0.000000 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_09g0004910 SBH 0.000000 82.015572 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_09g0004780 RBH 0.000000 0.0 24.683931
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_09g0004820 SBH 16.961500 1.879652 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_09G020860 RBH 43.482864 15.644846 60.806488
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0004690 RBH 583.834290 405.108185 720.377991
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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