Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0784500 | OGI:01099690 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:33240486-33243618 | ||||||||
| Gene Symbol | SDRLK-15 | ||||||||||
| DNA seq | ATCTCTCTTGCCATTCGCTTTAGCCTAACATACGGTGCCGAGATGTCCGCCGCCACGGCCATAATCTCGTTTCATCCCCGTTGTTGTGGAACCCTAGCCTCCCATCCTCCTCCCCGCGGCTGGTCCCCTCGACTACGGCCTTATCTGAAGGAATTGGCAAGGTGGCGACAGGGCTCCAATGACAGACAATCGGTAGCTCTAAGCCTTTAAGCAAGGGAGGCAGATCTAGTGGTTGGAGTAGAGAAAGAAGGGAGGAGGTAGGGTATTTTATTTTTGGAGTTTTTTTAGATGTGGCAACATATTGTTTCCCCATCTTGCGTCTTGGTATATTTGAATGTTTAACTCTATTTTGTTGTATGTTGCACATTTCGATTTTGGGGTGTTGCTACCAGTTTGTTCGAGTGTTTCATACTTGCATCTCGTTGAAACATTTTTCTCTAAGTAATAAAACATTTTTTTTTACCGAACATTGAAATATCTAAAACAATTTTACTGAAACATTTTTCATTGAGTGGTGAAACATGTGAAACACTTGAAACACCATCCGCGTAGGCCGTAGTCCTCCCTGAATTTCACCCATCTGAAAATATGTGCTTAGGGGGTATGTGCTTTGAATACTTAATTACCATCTCACAAAAATAATAAAACAAAAGAACCTGTGATCGATTTCTCATATTGGTTAGCGAATTGAGCATGCTAACTTTCCTCTTCGAACTAAACATTTCTAATGGCACGCACAGTCTTCTATTTCACCGGACCAACCATGGAAACTTGTCCCCATTATACGCATACTAAGTCAATGGTTGCCTTTAAATATAGGCAAAATTAGTAAAATTACCATGGGTTAACGGGACAAGTAGCCATCAGTCGTTGGGCTGCAAGAGCCAATGATTTCTTTTTATACGATCAACTGGACTTGTGCGTAAGAAAGAAGATATACTTGTGCGAGCAAGTTTCCACCATCACCTAACTTGATACCGACAAACATGAAATGAAAAAAGTTGTCTTGACTTTGTAGTATTCCCTCCGTTTCATATTATAAGACTTTCTAGCATTGCCTATATTTATATAGATGTTAATGAATCTAGGCATATATATGTGTCTAGATTCATTAATATCTATATGAATGTGGCCAATGCTAGAAAGTCATATATTGTGAAACGAAGGAAGTAGGACAGATCATTTTGACGCGTAAGTTTAAAAAGTCATACTTGATCAGCAAAATTATCACACGAGACCACAAAAACATCTAAATGTGTTTACCTCTATTTGATTGCAGCAAGACGCCGGCGCTTAATCAAGAACACGGTGATCGCCGTGGTCACGACTATCTGTGGCATTTTAGGAGTTGTTGGCTGTTACTGTTTTTGGAGGAACAAGGCGAGGAGGAAGCAGCACACTGAAATGGAGAAAAGCAGTGATGCCGATGATCTTCCGTTCAGGGTAAGGAAAAGCCCTGCGTTGAGCCCAGCAAGGGATCAATGGTTTGATGAGAACAGGGGTGCTGAAGATGATCTTGACCTTCCGTTGTTTGATCTTGAGATGATTTTCAACGCAACAGACAGATTCGCAGCGCATAATAAGATTGGGGAAGGTGGATTCGGCCCTGTTTACATGGTAAGATAACATATATTTTAGAACATTCAAGACAACATCCAATAGATTATACGATGGTAATTTTTCATAAACTGTAATGTGTAAGACAAATAAAATTATGAGCAGGGAAGACTTGAGGATGGGCAAGAAGTAGCCGTGAAGAGGTTGTCCAAAAGATCAGTACAGGGGGTTGTTGAATTTAAGAACGAGGTCAAACTAATTGCCAAGCTTCAGCACAGAAACCTTGTCAGGCTACTAGGTTGCTGCATTGATGATGACGAGAGGATACTGTTATACGAGCACATGCACAACAAGAGCCTAGACACGTTCATATTTGGTCAGTTCATTTCTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATAGTGTTTTGTTGTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAAAACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTGCCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGTTGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAACATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGACGACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAAGTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCACTTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGTTGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACTGGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGCATCATTTCTT
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| CDS seq | AGAAAGAAGGGAGGAGCAAGACGCCGGCGCTTAATCAAGAACACGGTGATCGCCGTGGTCACGACTATCTGTGGCATTTTAGGAGTTGTTGGCTGTTACTGTTTTTGGAGGAACAAGGCGAGGAGGAAGCAGCACACTGAAATGGAGAAAAGCAGTGATGCCGATGATCTTCCGTTCAGGGTAAGGAAAAGCCCTGCGTTGAGCCCAGCAAGGGATCAATGGTTTGATGAGAACAGGGGTGCTGAAGATGATCTTGACCTTCCGTTGTTTGATCTTGAGATGATTTTCAACGCAACAGACAGATTCGCAGCGCATAATAAGATTGGGGAAGGTGGATTCGGCCCTGTTTACATGACAAATAAAATTATGAGCAGGGAAGACTTGAGGATGGGCAAGAAGTAG
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| Protein seq | RKKGGARRRRLIKNTVIAVVTTICGILGVVGCYCFWRNKARRKQHTEMEKSSDADDLPFRVRKSPALSPARDQWFDENRGAEDDLDLPLFDLEMIFNATDRFAAHNKIGEGGFGPVYMTNKIMSREDLRMGKK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0784500 | OsNip_01t0784500-01 | Chr01 | 33240486 | 33243618 | + | RAP2018-11-26 | ||
| CDS seq | AGAAAGAAGGGAGGAGCAAGACGCCGGCGCTTAATCAAGAACACGGTGATCGCCGTGGTCACGACTATCTGTGGCATTTTAGGAGTTGTTGGCTGTTACTGTTTTTGGAGGAACAAGGCGAGGAGGAAGCAGCACACTGAAATGGAGAAAAGCAGTGATGCCGATGATCTTCCGTTCAGGGTAAGGAAAAGCCCTGCGTTGAGCCCAGCAAGGGATCAATGGTTTGATGAGAACAGGGGTGCTGAAGATGATCTTGACCTTCCGTTGTTTGATCTTGAGATGATTTTCAACGCAACAGACAGATTCGCAGCGCATAATAAGATTGGGGAAGGTGGATTCGGCCCTGTTTACATGACAAATAAAATTATGAGCAGGGAAGACTTGAGGATGGGCAAGAAGTAG
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| Protein seq | RKKGGARRRRLIKNTVIAVVTTICGILGVVGCYCFWRNKARRKQHTEMEKSSDADDLPFRVRKSPALSPARDQWFDENRGAEDDLDLPLFDLEMIFNATDRFAAHNKIGEGGFGPVYMTNKIMSREDLRMGKK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.792634 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0784200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g57510 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0784500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036050 | SBH | 0.308932 | 6.067736 | 2.141576 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035560 | RBH | 0.047633 | 4.072563 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035930 | RBH | 0.877289 | 4.312665 | 6.413123 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035330 | RBH | 0.000000 | 0.359146 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035070 | SBH | 0.170801 | 6.009096 | 9.001782 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0549200 | SBH | 5.296898 | 0.47691 | 0.4335855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034820 | SBH | 0.022970 | 0.025806 | 0.041690 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0544600 | SBH | 0.966191 | 3.7888955 | 6.2426915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034940 | SBH | 0.041094 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035000 | SBH | 0.061343 | 0.636929 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035230 | SBH | 0.386628 | 1.111203 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035310 | SBH | 0.056862 | 0.064467 | 0.020191 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035130 | SBH | 0.000000 | 0.105203 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G035610 | SBH | 0.077233 | 0.280594 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0035270 | RBH | 0.0 | 39.445164 | 1.901105 |
