Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0776800 | OGI:01098500 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:32860954-32863510 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGATTGGATCTGTTATCCTTCGCTTGTCCATGGACATGGCTGCCCCGACTGTTCCCTACAGGACCACGGCTCCTCCCCTTCCAGAGTCCGACGGCCATGAAGACGGCTCATCAGGGGGCATGGTCCTCCTCGACAGGTGGTGCCTCATCGCTGACCTGCCCAACGCCAGCACCGGCGTGGGCACCACGAGCACCGGCTTGCGCATCCAGGCGACCTTCCACCCCGCCCGCCCGCCGCTTCTCTCCCGCTTCTGCGTCCACTGCCCCGGCCTCGACTTCCGCCGCGTGGTGCCTAAGATCATCGCCTCCGACGCCGATCTCGTCCTCCTCTGCGTCCCCGTCAACCCCGACAGCATCGCCAACGCACGAGGTTTGGACTACTTTGTCTACAGGCCGCGCGCCCATCGGCTAGATCTGCTCCCGAACCCGCACCCCGTGTACCTCCACGACTCTATGACTGCCCTCCTCAGCCGCCAAGACGGCGCCTGGTATGCAGTCGCCGCCCTGGGTCTTGGCCCCCCGGTGTACAAAGGCGGTGCGCCCGTTAGCTGGGATTTCTACCTCCACCTCTACAGATCCACCTCCAGTTCCAAAGGTTGGACCTCCAAGCGGTTATCGGTGACCGAGTTCATCAGAGACAAGTTTATCCCTATACCTGCCTCTGTCGACAGGCTGTACCACGAGACAGGGAAGACCATCACGGTCGGCGGCGAGGGTGGCACCGTCGCCTGGGTGGACCTCTGGCGTGGCATCTTCCTCTGCGACGTGCTCGATGAGTTCCCTGCGCTCCGGGACATCCCTCTGCCGTGCCCAGCGAGGAGCAACAGGGATCTCTTCCTGATACAATATGACCCCAGCTATTTCCGGGATGTGACCATCAGCCGAAACAGAGACTCTATCAAGTATATTGAGATGGAAATGTGGTCACCAAAAGAGCCGATGAATACCACCAGCACTCCTGTTTCTTATGTGGATTGCGTGCTCAATAACACAAGGAAATCCCAGGTAATCCGTGACGACTGGAAGGCCACAACATGGAGCATGCCAATGCCGGTGATTGGTTCTTCGTGCGAGCACTGGCACCGTGACTGTGAGGTTGGTGTTAAAGACATCACCTTGGGTGCCAGCAACCCATGTCGTTCTAACTTGAGCTTCAGCGAGATCGTGGAAATGTTCAAGGAACTTCCAATGGTAAACCCCACCATAAGCATGGATGATGATGTTGTTTTCTTGCTTTCTAGAACCAGTCCCAGTCCCATGGACAAGTTGCATTTGGTGTTTGCTATTGATGTGAGGAAGAGGACGCTGCAAGGATTAACCAAGCTTGATGTCCAGCCGCAGAACTCCGTTTGCATGGTCACCTTATGCACCAGTGAGATTTGCAGGTATCTGAGGAATATTACAGGTAACTTCTCTACACTGGCAATTCATCACCTTGTGTTTTTACATGTGACCATATGTATGAATGCAATGCTTGCCATTTTTAAGATCTAGGGAATTATTGTTTTTGTACCTTTCTTGTTTCGGTAGGGTCTAGAGCTAAATTCAGGAGGCATGCCTTGTCGCCTTGATGACAGTGTGATGCATGGAAGACTATTGATATCAGTTGTTTTGTACATTGTTGTCAAAGTTATATATCAGTTAATTAAACAAATCATGGCAATTCAATAGAAATAAGTTTGTGAATTGTGTTGAGCTGAATCTGTGTTTGTGCGCAACCCATCCTTTAAAATGACAGCAAAACTATTATGGTACTATTAGATAATTCCACAGCTTAGTTTTCTTTTATTGTGGTGGAATTCTGTCAAGTTGGTAGTGAACAGTACTTTCAAAACAAATGCTCGTTGATTGAGTGAATTGCAAGCTTGGCTCAACATTTTAGTGGCAGAAGATACGCAGCCAAGAAATTGTGTTCAGCGTGTTCTTGCCATAAGCGGCATTTTATGGTACATGATATTGGGGTTTTGCGTTTATGATAGAAAAAGTCCGTCTGGATTTTAACTTCAATAATAATATATTCGACGAAAGCAACCTGGATACTAGTAATTGTTTCTTGCTTTAAACGCCTGTCTTTCTTTGTGCTAGTTACTGACAATCATGACTTGTTCTTGTTGATTGAAAAATGCAATTATTGCTGTTTCTTGTTGATTTTCTTTGGTGCAGTCACAGGCGAAGCACTTAATGAACTGGAAATTAGCTCTTAAATTGGCCAGGACAAAGAAGCGTGTCAGATGATGCAACTTGAGCTTGTTGATTTATGAAAATTGGCCGTGTTTAGTTTCACGCCCAATTTTTTTTATACGGACACACATTTGAAATATTAAACGTAGTCTAATAATAAAACAAATTACATAATCATCCGCCTATAAAATGCGAGACGAATCTATTAAGTCTAATTAATCCGTCATTAGCAAATGTTTACTGTAGCACCACATTGTCAAATCATGGCATAATTAGGCTCAAAAGATTCGTCTCGCAATTTACATGTAAACTGTGCAATTGTTTTTTTTTTCGTCCACATTTAATGCTCTGTGCATGTGTCCAAATATTTGATGTG
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| CDS seq | ATGGACATGGCTGCCCCGACTGTTCCCTACAGGACCACGGCTCCTCCCCTTCCAGAGTCCGACGGCCATGAAGACGGCTCATCAGGGGGCATGGTCCTCCTCGACAGGTGGTGCCTCATCGCTGACCTGCCCAACGCCAGCACCGGCGTGGGCACCACGAGCACCGGCTTGCGCATCCAGGCGACCTTCCACCCCGCCCGCCCGCCGCTTCTCTCCCGCTTCTGCGTCCACTGCCCCGGCCTCGACTTCCGCCGCGTGGTGCCTAAGATCATCGCCTCCGACGCCGATCTCGTCCTCCTCTGCGTCCCCGTCAACCCCGACAGCATCGCCAACGCACGAGGTTTGGACTACTTTGTCTACAGGCCGCGCGCCCATCGGCTAGATCTGCTCCCGAACCCGCACCCCGTGTACCTCCACGACTCTATGACTGCCCTCCTCAGCCGCCAAGACGGCGCCTGGTATGCAGTCGCCGCCCTGGGTCTTGGCCCCCCGGTGTACAAAGGCGGTGCGCCCGTTAGCTGGGATTTCTACCTCCACCTCTACAGATCCACCTCCAGTTCCAAAGGTTGGACCTCCAAGCGGTTATCGGTGACCGAGTTCATCAGAGACAAGTTTATCCCTATACCTGCCTCTGTCGACAGGCTGTACCACGAGACAGGGAAGACCATCACGGTCGGCGGCGAGGGTGGCACCGTCGCCTGGGTGGACCTCTGGCGTGGCATCTTCCTCTGCGACGTGCTCGATGAGTTCCCTGCGCTCCGGGACATCCCTCTGCCGTGCCCAGCGAGGAGCAACAGGGATCTCTTCCTGATACAATATGACCCCAGCTATTTCCGGGATGTGACCATCAGCCGAAACAGAGACTCTATCAAGTATATTGAGATGGAAATGTGGTCACCAAAAGAGCCGATGAATACCACCAGCACTCCTGTTTCTTATGTGGATTGCGTGCTCAATAACACAAGGAAATCCCAGGTAATCCGTGACGACTGGAAGGCCACAACATGGAGCATGCCAATGCCGGTGATTGGTTCTTCGTGCGAGCACTGGCACCGTGACTGTGAGGTTGGTGTTAAAGACATCACCTTGGGTGCCAGCAACCCATGTCGTTCTAACTTGAGCTTCAGCGAGATCGTGGAAATGTTCAAGGAACTTCCAATGGTAAACCCCACCATAAGCATGGATGATGATGTTGTTTTCTTGCTTTCTAGAACCAGTCCCAGTCCCATGGACAAGTTGCATTTGGTGTTTGCTATTGATGTGAGGAAGAGGACGCTGCAAGGATTAACCAAGCTTGATGTCCAGCCGCAGAACTCCGTTTGCATGGTCACCTTATGCACCAGTGAGATTTGCAGGTATCTGAGGAATATTACAGTCACAGGCGAAGCACTTAATGAACTGGAAATTAGCTCTTAA
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| Protein seq | MDMAAPTVPYRTTAPPLPESDGHEDGSSGGMVLLDRWCLIADLPNASTGVGTTSTGLRIQATFHPARPPLLSRFCVHCPGLDFRRVVPKIIASDADLVLLCVPVNPDSIANARGLDYFVYRPRAHRLDLLPNPHPVYLHDSMTALLSRQDGAWYAVAALGLGPPVYKGGAPVSWDFYLHLYRSTSSSKGWTSKRLSVTEFIRDKFIPIPASVDRLYHETGKTITVGGEGGTVAWVDLWRGIFLCDVLDEFPALRDIPLPCPARSNRDLFLIQYDPSYFRDVTISRNRDSIKYIEMEMWSPKEPMNTTSTPVSYVDCVLNNTRKSQVIRDDWKATTWSMPMPVIGSSCEHWHRDCEVGVKDITLGASNPCRSNLSFSEIVEMFKELPMVNPTISMDDDVVFLLSRTSPSPMDKLHLVFAIDVRKRTLQGLTKLDVQPQNSVCMVTLCTSEICRYLRNITVTGEALNELEISS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0776800 | OsNip_01t0776800-01 | Chr01 | 32860954 | 32863510 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACATGGCTGCCCCGACTGTTCCCTACAGGACCACGGCTCCTCCCCTTCCAGAGTCCGACGGCCATGAAGACGGCTCATCAGGGGGCATGGTCCTCCTCGACAGGTGGTGCCTCATCGCTGACCTGCCCAACGCCAGCACCGGCGTGGGCACCACGAGCACCGGCTTGCGCATCCAGGCGACCTTCCACCCCGCCCGCCCGCCGCTTCTCTCCCGCTTCTGCGTCCACTGCCCCGGCCTCGACTTCCGCCGCGTGGTGCCTAAGATCATCGCCTCCGACGCCGATCTCGTCCTCCTCTGCGTCCCCGTCAACCCCGACAGCATCGCCAACGCACGAGGTTTGGACTACTTTGTCTACAGGCCGCGCGCCCATCGGCTAGATCTGCTCCCGAACCCGCACCCCGTGTACCTCCACGACTCTATGACTGCCCTCCTCAGCCGCCAAGACGGCGCCTGGTATGCAGTCGCCGCCCTGGGTCTTGGCCCCCCGGTGTACAAAGGCGGTGCGCCCGTTAGCTGGGATTTCTACCTCCACCTCTACAGATCCACCTCCAGTTCCAAAGGTTGGACCTCCAAGCGGTTATCGGTGACCGAGTTCATCAGAGACAAGTTTATCCCTATACCTGCCTCTGTCGACAGGCTGTACCACGAGACAGGGAAGACCATCACGGTCGGCGGCGAGGGTGGCACCGTCGCCTGGGTGGACCTCTGGCGTGGCATCTTCCTCTGCGACGTGCTCGATGAGTTCCCTGCGCTCCGGGACATCCCTCTGCCGTGCCCAGCGAGGAGCAACAGGGATCTCTTCCTGATACAATATGACCCCAGCTATTTCCGGGATGTGACCATCAGCCGAAACAGAGACTCTATCAAGTATATTGAGATGGAAATGTGGTCACCAAAAGAGCCGATGAATACCACCAGCACTCCTGTTTCTTATGTGGATTGCGTGCTCAATAACACAAGGAAATCCCAGGTAATCCGTGACGACTGGAAGGCCACAACATGGAGCATGCCAATGCCGGTGATTGGTTCTTCGTGCGAGCACTGGCACCGTGACTGTGAGGTTGGTGTTAAAGACATCACCTTGGGTGCCAGCAACCCATGTCGTTCTAACTTGAGCTTCAGCGAGATCGTGGAAATGTTCAAGGAACTTCCAATGGTAAACCCCACCATAAGCATGGATGATGATGTTGTTTTCTTGCTTTCTAGAACCAGTCCCAGTCCCATGGACAAGTTGCATTTGGTGTTTGCTATTGATGTGAGGAAGAGGACGCTGCAAGGATTAACCAAGCTTGATGTCCAGCCGCAGAACTCCGTTTGCATGGTCACCTTATGCACCAGTGAGATTTGCAGGTATCTGAGGAATATTACAGTCACAGGCGAAGCACTTAATGAACTGGAAATTAGCTCTTAA
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| Protein seq | MDMAAPTVPYRTTAPPLPESDGHEDGSSGGMVLLDRWCLIADLPNASTGVGTTSTGLRIQATFHPARPPLLSRFCVHCPGLDFRRVVPKIIASDADLVLLCVPVNPDSIANARGLDYFVYRPRAHRLDLLPNPHPVYLHDSMTALLSRQDGAWYAVAALGLGPPVYKGGAPVSWDFYLHLYRSTSSSKGWTSKRLSVTEFIRDKFIPIPASVDRLYHETGKTITVGGEGGTVAWVDLWRGIFLCDVLDEFPALRDIPLPCPARSNRDLFLIQYDPSYFRDVTISRNRDSIKYIEMEMWSPKEPMNTTSTPVSYVDCVLNNTRKSQVIRDDWKATTWSMPMPVIGSSCEHWHRDCEVGVKDITLGASNPCRSNLSFSEIVEMFKELPMVNPTISMDDDVVFLLSRTSPSPMDKLHLVFAIDVRKRTLQGLTKLDVQPQNSVCMVTLCTSEICRYLRNITVTGEALNELEISS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0776800 | OsNip_01t0776800-02 | Chr01 | 32861046 | 32862600 | + | RAP2018-11-26 | ||
| CDS seq | GGCCATGAAGACGGCTCATCAGGGGGCATGGTCCTCCTCGACAGGTGGTGCCTCATCGCTGACCTGCCCAACGCCAGCACCGGCGTGGGCACCACGAGCACCGGCTTGCGCATCCAGGCGACCTTCCACCCCGCCCGCCCGCCGCTTCTCTCCCGCTTCTGCGTCCACTGCCCCGGCCTCGACTTCCGCCGCGTGGTGCCTAAGATCATCGCCTCCGACGCCGATCTCGTCCTCCTCTGCGTCCCCGTCAACCCCGACAGCATCGCCAACGCACGAGGTTTGGACTACTTTGTCTACAGGCCGCGCGCCCATCGGCTAGATCTGCTCCCGAACCCGCACCCCGTGTACCTCCACGACTCTATGACTGCCCTCCTCAGCCGCCAAGACGGCGCCTGGTATGCAGTCGCCGCCCTGGGTCTTGGCCCCCCGGTGTACAAAGGCGGTGCGCCCGTTAGCTGGGATTTCTACCTCCACCTCTACAGATCCACCTCCAGTTCCAAAGGTTGGACCTCCAAGCGGTTATCGGTGACCGAGTTCATCAGAGACAAGTTTATCCCTATACCTGCCTCTGTCGACAGGCTGTACCACGAGACAGGGAAGACCATCACGGTCGGCGGCGAGGGTGGCACCGTCGCCTGGGTGGACCTCTGGCGTGGCATCTTCCTCTGCGACGTGCTCGATGAGTTCCCTGCGCTCCGGGACATCCCTCTGCCGTGCCCAGCGAGGAGCAACAGGGATCTCTTCCTGATACAATATGACCCCAGCTATTTCCGGGATGTGACCATCAGCCGAAACAGAGACTCTATCAAGTATATTGAGATGGAAATGTGGTCACCAAAAGAGCCGATGAATACCACCAGCACTCCTGTTTCTTATGTGGATTGCGTGCTCAATAACACAAGGAAATCCCAGGTAATCCGTGACGACTGGAAGGCCACAACATGGAGCATGCCAATGCCGGTGATTGGTTCTTCGTGCGAGCACTGGCACCGTGACTGTGAGGTTGGTGTTAAAGACATCACCTTGGGTGCCAGCAACCCATGTCGTTCTAACTTGAGCTTCAGCGAGATCGTGGAAATGTTCAAGGAACTTCCAATGGTAAACCCCACCATAAGCATGGATGATGATGTTGTTTTCTTGCTTTCTAGAACCAGTCCCAGTCCCATGGACAAGTTGCATTTGGTGTTTGCTATTGATGTGAGGAAGAGGACGCTGCAAGGATTAACCAAGCTTGATGTCCAGCCGCAGAACTCCGTTTGCATGGTCACCTTATGCACCAGTGAGATTTGCAGGTATCTGAGGAATATTACAGGTAACTTCTCTACACTGGCAATTCATCACCTTGTGTTTTTACATGTGACCATATGTATGAATGCAATGCTTGCCATTTTTAAGATCTAG
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| Protein seq | GHEDGSSGGMVLLDRWCLIADLPNASTGVGTTSTGLRIQATFHPARPPLLSRFCVHCPGLDFRRVVPKIIASDADLVLLCVPVNPDSIANARGLDYFVYRPRAHRLDLLPNPHPVYLHDSMTALLSRQDGAWYAVAALGLGPPVYKGGAPVSWDFYLHLYRSTSSSKGWTSKRLSVTEFIRDKFIPIPASVDRLYHETGKTITVGGEGGTVAWVDLWRGIFLCDVLDEFPALRDIPLPCPARSNRDLFLIQYDPSYFRDVTISRNRDSIKYIEMEMWSPKEPMNTTSTPVSYVDCVLNNTRKSQVIRDDWKATTWSMPMPVIGSSCEHWHRDCEVGVKDITLGASNPCRSNLSFSEIVEMFKELPMVNPTISMDDDVVFLLSRTSPSPMDKLHLVFAIDVRKRTLQGLTKLDVQPQNSVCMVTLCTSEICRYLRNITGNFSTLAIHHLVFLHVTICMNAMLAIFKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.258231 | 1.893792 | 3.817715 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g56900 | RBH | 1.502851 | 1.204123 | 0.962902 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0776800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0035590 | RBH | 0.989150 | 3.413025 | 3.874642 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035090 | RBH | 0.147790 | 2.273587 | 3.231077 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035470 | RBH | 1.189678 | 3.785006 | 6.377858 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0034860 | RBH | 0.151088 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0034580 | RBH | 1.937641 | 2.125793 | 8.556915 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0543200 | RBH | 1.2750415 | 5.8118235 | 7.1062 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034330 | RBH | 0.168879 | 0.097744 | 0.870207 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0539800 | RBH | 0.876226 | 4.7344275 | 5.7311785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034470 | RBH | 0.133866 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0034530 | RBH | 0.222304 | 3.681945 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0034770 | RBH | 1.513697 | 6.802785 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0034850 | RBH | 0.216834 | 0.285559 | 0.767298 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0034640 | RBH | 0.097414 | 1.753001 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G035120 | RBH | 0.323094 | 2.907898 | 1.768428 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0034770 | RBH | 0.664742 | 0.000000 | 5.622666 |
