Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0755700 | OGI:01095690 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:31710636-31711784 | ||||||||
| Gene Symbol | NBIP1, OsNBIP1 | ||||||||||
| DNA seq | AAATCAAATCATTAGCCAAGGCCAAGCAGGCGCGGCTGCTTAGCTTATAAAGAGACCAGATAGTACTACTCAGCTTAGCACACCCAAACCGCGCGCCATCTCACCAAACCAAGGGAGAAGCTTAGCTCCGCCAACTAGCTCGCGCTCGCGTGTAGCGGATAAGCGGAGTATCGATCGATGGATCGGACGTCAGCCGTGCCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCGGCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTGCTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCAGGCGCGCGGCGGAAGCGGCCGCGCTGGCGACCGTGAACGCGGGGGCGCCGCCCAAGCAGGTCGGGCTGGACCCGTCGGCCATCGCGGCGCTGCCGACCGCGGCGTACGGGAAGGTGGCGGGCGGCGACGCGGCGGGCGGCACCACCGAGTGCGCCATCTGCCTCGGCGCCATGCAGGAGGCGGACGCGGTGCGCGTGCTGCCGGCCTGCCGCCACGTGTTCCACGTCGCCTGCATCGACAAGTGGCTCGCGTCCAGCTCGTCGTGCCCGGTCTGCCGCGCCGGGGTGGAGCCGCCGCCGCCGCCTCCGTCAACGGCGGCGGCGAGGTGCGTGCACGAGAAGCAGGACGCGGAGAAGGAGGAGGCGGCCGCCGGTAGCTCGGCGCCGGTGCGGGTGCTCGGCGCGTCGCTAATGAAGATGCTGAGCAGGGAGAGACCGTCGCCGAGGAGGCAGCCGGGAGTCCACGCCGTGGAAATGGAAGACTTGGAAAGCCAGCTGCCGCGGCCGCAACAGCAGTAGCATATGCGGCGAATAATCAGCGGCCATTTTTAAGCCATTTTTTGTTTCATTTTTCGCTTCGTTTATACATCAAGCGTTCCATGTTGGTTCAGTATGAACTACATAAGTGTGTAAGTGTTTTTCTTTATTAGGAGAACGAAAGTTCTCCATTAGGTGTTTGGTGCTTGTAGCTGTCAAAGGAAAGGAGCAGACCCGTCTCTTGTATTTGTACAAAGAAGGGAAAGTGGATAAAGCTCTGATGGAATTTCTCTAGGC
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| CDS seq | ATGGATCGGACGTCAGCCGTGCCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCGGCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTGCTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCAGGCGCGCGGCGGAAGCGGCCGCGCTGGCGACCGTGAACGCGGGGGCGCCGCCCAAGCAGGTCGGGCTGGACCCGTCGGCCATCGCGGCGCTGCCGACCGCGGCGTACGGGAAGGTGGCGGGCGGCGACGCGGCGGGCGGCACCACCGAGTGCGCCATCTGCCTCGGCGCCATGCAGGAGGCGGACGCGGTGCGCGTGCTGCCGGCCTGCCGCCACGTGTTCCACGTCGCCTGCATCGACAAGTGGCTCGCGTCCAGCTCGTCGTGCCCGGTCTGCCGCGCCGGGGTGGAGCCGCCGCCGCCGCCTCCGTCAACGGCGGCGGCGAGGTGCGTGCACGAGAAGCAGGACGCGGAGAAGGAGGAGGCGGCCGCCGGTAGCTCGGCGCCGGTGCGGGTGCTCGGCGCGTCGCTAATGAAGATGCTGAGCAGGGAGAGACCGTCGCCGAGGAGGCAGCCGGGAGTCCACGCCGTGGAAATGGAAGACTTGGAAAGCCAGCTGCCGCGGCCGCAACAGCAGTAG
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| Protein seq | MDRTSAVPGRVSDPGSAWFGGGERSSSAGPGRNVRLIATAVAAFVSVLGLALFLHLYVCHVRRRNRRRAAEAAALATVNAGAPPKQVGLDPSAIAALPTAAYGKVAGGDAAGGTTECAICLGAMQEADAVRVLPACRHVFHVACIDKWLASSSSCPVCRAGVEPPPPPPSTAAARCVHEKQDAEKEEAAAGSSAPVRVLGASLMKMLSRERPSPRRQPGVHAVEMEDLESQLPRPQQQ |
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| Function | E3 ubiquitin-protein ligase ATL41 [UniProtKB/Swiss-Prot:Q9SLC3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0755700 | OsNip_01t0755700-01 | Chr01 | 31710636 | 31711784 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATCGGACGTCAGCCGTGCCGGGGAGAGTGAGCGACCCGGGGTCCGCGTGGTTCGGCGGCGGCGAGAGGAGCTCGTCGGCCGGGCCGGGGCGCAACGTGCGGCTCATCGCCACCGCCGTCGCCGCGTTCGTGTCCGTGCTCGGGCTGGCCCTGTTCCTCCACCTCTACGTCTGCCACGTACGCCGCCGGAACCGCAGGCGCGCGGCGGAAGCGGCCGCGCTGGCGACCGTGAACGCGGGGGCGCCGCCCAAGCAGGTCGGGCTGGACCCGTCGGCCATCGCGGCGCTGCCGACCGCGGCGTACGGGAAGGTGGCGGGCGGCGACGCGGCGGGCGGCACCACCGAGTGCGCCATCTGCCTCGGCGCCATGCAGGAGGCGGACGCGGTGCGCGTGCTGCCGGCCTGCCGCCACGTGTTCCACGTCGCCTGCATCGACAAGTGGCTCGCGTCCAGCTCGTCGTGCCCGGTCTGCCGCGCCGGGGTGGAGCCGCCGCCGCCGCCTCCGTCAACGGCGGCGGCGAGGTGCGTGCACGAGAAGCAGGACGCGGAGAAGGAGGAGGCGGCCGCCGGTAGCTCGGCGCCGGTGCGGGTGCTCGGCGCGTCGCTAATGAAGATGCTGAGCAGGGAGAGACCGTCGCCGAGGAGGCAGCCGGGAGTCCACGCCGTGGAAATGGAAGACTTGGAAAGCCAGCTGCCGCGGCCGCAACAGCAGTAG
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| Protein seq | MDRTSAVPGRVSDPGSAWFGGGERSSSAGPGRNVRLIATAVAAFVSVLGLALFLHLYVCHVRRRNRRRAAEAAALATVNAGAPPKQVGLDPSAIAALPTAAYGKVAGGDAAGGTTECAICLGAMQEADAVRVLPACRHVFHVACIDKWLASSSSCPVCRAGVEPPPPPPSTAAARCVHEKQDAEKEEAAAGSSAPVRVLGASLMKMLSRERPSPRRQPGVHAVEMEDLESQLPRPQQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.212483 | 0.0 | 1.521895 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0213400 | RBH | 0.509695 | 0.485492 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55110 | RBH | 0.125554 | 0.0 | 0.350433 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0755700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034040 | RBH | 0.732841 | 4.077496 | 2.699798 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033590 | RBH | 0.0 | 2.507904 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034030 | RBH | 0.983220 | 7.738513 | 0.726812 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033290 | RBH | 0.055497 | 0.137712 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033040 | RBH | 0.0 | 8.043907 | 2.636986 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0526400 | RBH | 3.8766685 | 44.186781 | 11.0153685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032770 | RBH | 0.338583 | 1.184991 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0522000 | RBH | 5.528393 | 69.572119 | 5.2357335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032970 | RBH | 0.0 | 0.229197 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033030 | RBH | 0.283892 | 4.702006 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033250 | RBH | 0.0 | 24.569048 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033340 | RBH | 0.141544 | 0.739429 | 0.169660 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033130 | RBH | 0.091880 | 6.739134 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G033600 | RBH | 0.122010 | 3.453933 | 0.276142 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033210 | RBH | 0.0 | 33.808781 | 3.056166 |
