Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0752500 | OGI:01095270 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:31567786-31568709 | ||||||||
| Gene Symbol | ERF92, OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78 | ||||||||||
| DNA seq | CTCCTACCTGACACACCACACTGCAAACCACTCTCTCGGTCTCTCCATCCATCCACCTCTCTCGATCGTCTCATGAGCTAGCGCGCCCCGCGCGTACAGCCCCGCATGTCTCTCTCCTTGGGGTTTAGCGCCGGCGCCGGCGTCGGTGCCGATCGCCTCGCCGCCGCGCCCGCGCTCCAGGCCGCCGGTGCTCTGCCGCCACGCGTGGACGTGTCTCTGTCGCTGGCGCGCGCGGCCAACGGGCAGCCGTCGTCGTACCTCCCGCTCAACGAGAACGACTCGCTGGACATGGTCCTCTTCGACGTCCTCCGCGAGGCCTCCGCGGTGGCGGCGCTGTCGTCGTCGTCGTCGTCGTCGCCGGAGCTGGGCGCGCGGACGACGGCGCCGGTGGTCGCCGGCCACCCCGCCGGGCGCAAGGGTGGCGGCGGCGGAGGCGGAGGCAGGGGAGCGGCGGCGAGGGGCGGCGCCGCTGGCGGGCGGCACTACCGCGGTGTGAGGCGGCGGCCGTGGGGGAAGTACGCCGCGGAGATCCGTGACCCGACGCGGCACGGCGCGCGGCTGTGGCTCGGCACCTTCGGCACGGCCGAGGAGGCCGCCGCGGCGTACGACCGCGCCGCGTTCCGCATGCGGGGCGCCAAGGCGCTGCTCAACTTCCCGCCGGCTGTCGCCGGTGACGGCGCCCGTCGCGGCGCCGCCGCGGCCGCGAAGCAGGTCGGCATGAGCGACGGTGAGTGCGTGATATGAAATGAAGATCAGTTTGACATGTACAGCGCGTAGGATGAGGATCAAAACCCAGGGTTAATTTGCAGTAGGCACTTGGCCTGAGTGTTAGTGTGGTAATGTTCTGCCTTATTGATGGTACAGTGGTACCAAGAGCATGTCATGTAGTTTGTTACTCTGTGCTTAGTGCTCACATTTTTTATG
More
|
||||||||||
| CDS seq | ATGTCTCTCTCCTTGGGGTTTAGCGCCGGCGCCGGCGTCGGTGCCGATCGCCTCGCCGCCGCGCCCGCGCTCCAGGCCGCCGGTGCTCTGCCGCCACGCGTGGACGTGTCTCTGTCGCTGGCGCGCGCGGCCAACGGGCAGCCGTCGTCGTACCTCCCGCTCAACGAGAACGACTCGCTGGACATGGTCCTCTTCGACGTCCTCCGCGAGGCCTCCGCGGTGGCGGCGCTGTCGTCGTCGTCGTCGTCGTCGCCGGAGCTGGGCGCGCGGACGACGGCGCCGGTGGTCGCCGGCCACCCCGCCGGGCGCAAGGGTGGCGGCGGCGGAGGCGGAGGCAGGGGAGCGGCGGCGAGGGGCGGCGCCGCTGGCGGGCGGCACTACCGCGGTGTGAGGCGGCGGCCGTGGGGGAAGTACGCCGCGGAGATCCGTGACCCGACGCGGCACGGCGCGCGGCTGTGGCTCGGCACCTTCGGCACGGCCGAGGAGGCCGCCGCGGCGTACGACCGCGCCGCGTTCCGCATGCGGGGCGCCAAGGCGCTGCTCAACTTCCCGCCGGCTGTCGCCGGTGACGGCGCCCGTCGCGGCGCCGCCGCGGCCGCGAAGCAGGTCGGCATGAGCGACGGTGAGTGCGTGATATGA
More
|
||||||||||
| Protein seq | MSLSLGFSAGAGVGADRLAAAPALQAAGALPPRVDVSLSLARAANGQPSSYLPLNENDSLDMVLFDVLREASAVAALSSSSSSSPELGARTTAPVVAGHPAGRKGGGGGGGGRGAAARGGAAGGRHYRGVRRRPWGKYAAEIRDPTRHGARLWLGTFGTAEEAAAAYDRAAFRMRGAKALLNFPPAVAGDGARRGAAAAAKQVGMSDGECVI |
||||||||||
| Function | Pathogenesis-related genes transcriptional activator PTI5 [UniProtKB/Swiss-Prot:O04681] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0752500 | OsNip_01t0752500-01 | Chr01 | 31567786 | 31568709 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCTCTCTCCTTGGGGTTTAGCGCCGGCGCCGGCGTCGGTGCCGATCGCCTCGCCGCCGCGCCCGCGCTCCAGGCCGCCGGTGCTCTGCCGCCACGCGTGGACGTGTCTCTGTCGCTGGCGCGCGCGGCCAACGGGCAGCCGTCGTCGTACCTCCCGCTCAACGAGAACGACTCGCTGGACATGGTCCTCTTCGACGTCCTCCGCGAGGCCTCCGCGGTGGCGGCGCTGTCGTCGTCGTCGTCGTCGTCGCCGGAGCTGGGCGCGCGGACGACGGCGCCGGTGGTCGCCGGCCACCCCGCCGGGCGCAAGGGTGGCGGCGGCGGAGGCGGAGGCAGGGGAGCGGCGGCGAGGGGCGGCGCCGCTGGCGGGCGGCACTACCGCGGTGTGAGGCGGCGGCCGTGGGGGAAGTACGCCGCGGAGATCCGTGACCCGACGCGGCACGGCGCGCGGCTGTGGCTCGGCACCTTCGGCACGGCCGAGGAGGCCGCCGCGGCGTACGACCGCGCCGCGTTCCGCATGCGGGGCGCCAAGGCGCTGCTCAACTTCCCGCCGGCTGTCGCCGGTGACGGCGCCCGTCGCGGCGCCGCCGCGGCCGCGAAGCAGGTCGGCATGAGCGACGGTGAGTGCGTGATATGA
More
|
|||||||
| Protein seq | MSLSLGFSAGAGVGADRLAAAPALQAAGALPPRVDVSLSLARAANGQPSSYLPLNENDSLDMVLFDVLREASAVAALSSSSSSSPELGARTTAPVVAGHPAGRKGGGGGGGGRGAAARGGAAGGRHYRGVRRRPWGKYAAEIRDPTRHGARLWLGTFGTAEEAAAAYDRAAFRMRGAKALLNFPPAVAGDGARRGAAAAAKQVGMSDGECVI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.020998 | 0.541041 | 1.815503 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g54890 | RBH | 0.0 | 0.357252 | 0.528811 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0752500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033820 | RBH | 0.222967 | 0.0 | 0.823640 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033370 | RBH | 0.0 | 1.101682 | 1.070582 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033810 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032830 | RBH | 2.148156 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0524100 | RBH | 3.357061 | 7.8650735 | 26.7312905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032540 | RBH | 0.0 | 0.188899 | 0.152601 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0519400 | RBH | 3.2810595 | 5.838679 | 3.1796205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032790 | RBH | 0.285447 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033030 | RBH | 0.0 | 5.006173 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033120 | RBH | 0.188829 | 0.290776 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032910 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G033380 | RBH | 0.285168 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033000 | RBH | 0.0 | 4.177184 | 0.747109 |
