Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g073749A | OGI:01092920 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:30761668-30763468 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAACGACTTGAATGCGAAGTTCTATTGATAGAGCAGGAAAAAATTACAAGATTACAACCCTGAAGTGTCGTAACCAGAAAAAAGGAAAAAAACCACCACCCACACACCGACATCGTCAACACATAAACCCAGGAGAAGGCTAGCACCAGAACGGCTGTCGCTAAGCGTGACCGACCGCCACTAGACCAACAAAGGAACACAGGCGAGATCGCCCCCCTAGGGGATGCCAAAACAACGTCTTCAAGAAGAGAAGCGACAAACCGCCGCCGCCGTCCGTCGGAGCTCAAAGAAGCCAAGACTGGGCTTTCGCCCGGCAACCACCCTTGAGGGGTGAGACAGCACGACAACGCCCTCAAGAGGGGGAATGAACCATCGTTGTCGGTTCGGCCGAGGCCAGACTAGGTTTTCACCCGCCGCTCACCACATGCGAATCCACGGCTGACACACCGATGCTCCACCACCACACAAGCTCTACCGACATGTGGAACCCCTGCACCGGCGTCCCCCGTCGGACAGTCTTCGTGCGCCAAAGACCGCGCCACTCCTACCGGCAGCTCCTCCTCACACCTAGGTCGCCTCCTCCACCGCCGGCCGCGCCACTCGCGCCAAACCGACCTCCTCCACCGGACGCGCCTCTCGCGTCATTCCGACCTCCCTCCATCGGCCGCACCTCTCGCGCCAAGCCGGCATCCATCTCCGCCGCCCGCGCCTCTCGCGCCGAGCCGGCCTCCGTTGCCATCGGCTGCGCCTCTCTGCGCCAAGCCGGTCTCCGACCCCTCCACCAAACGATGTCGTGCCGGCCAAAAGCAACCGTCTGCCACGCCCTCGGCTAGCCATCCGAGTCCGCCATGCCTCCGGTGATCGCAGACACGGTCACCGCCACCGCCACCGCAGCCGCTGCTGCCGAACGCCCAGCCACCTCGCTAGCGACCCGCATCCGCCAACGTCGCCACTGTCCACAGCCACGGCCGCCGTCGCCGCTGCCACCGACGCCAGCCTCCGCCTCCGCAAACCGCTGCGCCGTCATCCTCCGCCACCAAGCAGCCAGCTCGACGCCGCCGCCATGTCCTCCGCCGCTGTTGCCAGCCGCCGCCGCCGCCAACTGCCACGAGCACCACGGCGGGCACGACCGCGCCGCCGTCGCCAACAGCCGTCTGGCCGGTCAGCCTCCGCTGCATGCCGGCCGGGCTGCTCCTCCGCGCCGCGCTGCCGCGCTGTCGCGGCCGCCGCCGCCACAAGCTGTTCCGCCGAGTCGCGCCCCCACTGCCGTGAGCTCGAGGTCGCGCCGCCATCACCGCAAGCACGAGGTCGCCCGCCGTCTTGCCGCGCCGCCGTTGTCGGGAGCTCGAGGCCGCCCGCCGTCTTGCCGCGCCGCCGTCGCCACGAGCTCGGGCCGCCCACCGACTTGTCGCGTCGCCGTCGCCGCGAGCTCGAGGCCGCCCACCGTCTTGCCGCGCCGCCGCCGCCCCTCTCCCGATCTGGCCACCGGGGGGCCAGATCCTCCCCGGGGAGGCCGGATCCGCGTCCAGCACGACCGGATCCGCCCCACCGGCCGCTCCGGCCGCCGCCTTCCGCCGTGCGTGCGTCGCGCTGCCTCCCACGCCGAGGGGATGCTCCGCCGCCGGTACGTTTTCCCCGCCGCCGCCTTTCCGGCCGGCCGCACGGTTTCCGGCGGCGGGTTCTGGAGGCGGCGAGGTGGCTGGAGGCGTTGGGAGGGGGCGGCGCGGGCGGCTAGGGTTTCGCTCCCGAGCCGCCCGCGTGAGAGCGGCGGGAGAGCTCTATGTGAAGGACTTGGTTTCTT
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| CDS seq | ATGGCGGCGCGACCTCGAGCTCACGGCAGTGGGGGCGCGACTCGGCGGAACAGCTTGTGGCGGCGGCGGCCGCGACAGCGCGGCAGCGCGGCGCGGAGGAGCAGCCCGGCCGGCATGCAGCGGAGGCTGACCGGCCAGACGGCTGTTGGCGACGGCGGCGCGGTCGTGCCCGCCGTGGTGCTCGTGGCAGTTGGCGGCGGCGGCGGCTGGCAACAGCGGCGGAGGACATGGCGGCGGCGTCGAGCTGGCTGCTTGGTGGCGGAGGATGACGGCGCAGCGGTTTGCGGAGGCGGAGGCTGGCGTCGGTGGCAGCGGCGACGGCGGCCGTGGCTGTGGACAGTGGCGACGTTGGCGGATGCGGGT |
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| Protein seq | MAARPRAHGSGGATRRNSLWRRRPRQRGSAARRSSPAGMQRRLTGQTAVGDGGAVVPAVVLVAVGGGGGWQQRRRTWRRRRAGCLVAEDDGAAVCGGGGWRRWQRRRRPWLWTVATLADAG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g073749A | OsNip_01t073749A-01 | Chr01 | 30761668 | 30763468 | - | IsoSeq | ||
| CDS seq | ATGGCGGCGCGACCTCGAGCTCACGGCAGTGGGGGCGCGACTCGGCGGAACAGCTTGTGGCGGCGGCGGCCGCGACAGCGCGGCAGCGCGGCGCGGAGGAGCAGCCCGGCCGGCATGCAGCGGAGGCTGACCGGCCAGACGGCTGTTGGCGACGGCGGCGCGGTCGTGCCCGCCGTGGTGCTCGTGGCAGTTGGCGGCGGCGGCGGCTGGCAACAGCGGCGGAGGACATGGCGGCGGCGTCGAGCTGGCTGCTTGGTGGCGGAGGATGACGGCGCAGCGGTTTGCGGAGGCGGAGGCTGGCGTCGGTGGCAGCGGCGACGGCGGCCGTGGCTGTGGACAGTGGCGACGTTGGCGGATGCGGGT
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| Protein seq | MAARPRAHGSGGATRRNSLWRRRPRQRGSAARRSSPAGMQRRLTGQTAVGDGGAVVPAVVLVAVGGGGGWQQRRRTWRRRRAGCLVAEDDGAAVCGGGGWRRWQRRRRPWLWTVATLADAG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.355152 | 0.278040 | 3.251814 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032880 | RBH | 0.515554 | 5.704641 | 3.541509 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032380 | RBH | 0.070663 | 1.741300 | 1.621833 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032091 | RBH | 0.0 | 0.158888 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032360 | RBH | 0.124761 | 2.781073 | 3.950665 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032011 | RBH | 0.764882 | 12.331162 | 4.093790 |
