Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0720300 | OGI:01090600 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:30021240-30023716 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTTTGTCCACCAGTGAAGGAAATCCTTGCGCCTGTTGATCTTCTTTTGGAGCTGGAGGACACCATACAGTAAAGCTTCAGCAGTTGGAGGGCATCCAGGGACGTAAATGTCCACAGGAACAATACGGTCGCATCCACGCACAACAGAGTAGGAGTAATGGTAGTATCCACCACCATTGGCACAGCTGCCCATGGAAATAACCCACCGAGGCTCAGGCATCTGATCATAAACCCTGTGGAAGAAGTTACCAATGCCATTAGCATTATAAAATTGTGAGCAGGTAAGAAAGGTTGAATGGTCTTTTGACAAAACCATTCCTAAATAGCAAAAGGCACAACAGAAGTTCTTCACGAAATCTTAAAAAGCATGTTTGAAAAAAAAGAAGAAGGAAGTAGCACCCTAAAATTAATAGCAGATAACCAGAGGATACACAAGAAAAGCACTGATTTCCACAAAGGCCATGGCATTCATACAACAAAATAATTTTATTTGATTTCAAACACTCAGAACAACACGCCACTCCTTTTGCTGGTTTCTGGACATTTCAGAGAAGCACATCAATACAAACTACACCTTGCTGATCAGAATTAGATTTTTCTTTGCTTTCTAGAGTTATAGATTCTTGGAGAAGCAAATCCATGCTTATGCAAATAATCAGGGCATATATTTGTTTTTTTTTCTACCGTGGAGCACTATATTATTTTTTGAAAAAATTGGTATCGAGACAAGCAAATCTTAAATAACCTAGGTACAAGTGTTGTTAAGGCATAAGGTGTTTTGAGGCAACACAGTTGCACACCACCGCCTCAGCATCATAGGGCATGAGGTGTTGTGAATTGTGATGTCATATGAGGTGACTAAGGTGTGATTAGTGGAGAATATTGTAGAAAAATCAGCAAGAGCAAAGGGGAAATTGATAAAAGGCCCAATAAGCCAAGCAGCCAACCCACCAAAGCTAACATTAGCTTCATACCCACATGTTCTACGTATGCCCTAAGAGGCATCATACTCCACCAGCCACCAGCCACCAGCCACCAGCCACCAGCCATCAGCAGAGGAGGCACTAGCCGCCATCTGGCTGCCGACCACCTTTGCATGAGCTCAACATCTCAGGCTGCTACCACTGCCATGGCGCCATTGGCCCATTAGAGCTCAATGCCTCTGCTCACCTCATTGTCCGTCGCCGCCACCAGAGAGATTCAAAGGCTCCAGCAAGCTGCAACAACTGCGATCTTGAGCTAGATCTGATGGTAGTGGCATGGGATCTGCAACAACATATATCCTGCAACCGCCTTTACCACTATGGCGATGCCATAACAATGCCTTAACAACCATGCTATGTACCCACAATATCTAATTCACCAGCAAATATGTTTTTTCACTAATGAGTAATCGACAACGTAAACATCAAATCAATTTATGTTACACATATATCCTGGAAGTCAAACGCAATGCTTTAATTAAGTTAACATTTAGCACTACTGAAGCTTGAACGCATAAGCATTCCAAGTCTGATCCTCCATGAATGCATAGGTCCTCAAATCAAATCCAGCAAGACTTTAACACCAAGCCATCAAATCGGGATCCACAGGCAGTGGTTTATGGTTCTAAAATCAAATCCAGCCAGTGTTTAACACCAAGCCATTGAATTGACCCTATATATTTATCAAGTCGATTTATCCTCTCAAATATCTGCAAGGCCATATAGGGCGTATGCTAAGTTATCCTAAGTTATGGTGGGTTGAATGATCCACAATCTTCATTGGCATACTTTGAATCATGCCAAAATATTTAGACTAATGCACTATTGATGCTGGAAGGAGGTTTCAATTATTCACCGCACTATCCCATTTGTCCTGTCCGGGCATTCAGAACATTGGTGCTTGTGTCGAATTTGTGGCAAGTTTCCAAATGACATTAAAGGTGGGGATTAAGGCTTTTCGGATTATGGCTTTTCTACACTACAGAATGACATCACATTAGCTATTGAGTCTTTTTCACCCTGGCAAGATAATTTCCAAGATCTAAAAGCTGGGCAACACCAAATTCCCAGATCGGAACACAGGAACGCGAAATCTGAGCAGCCGAGGGGAGGAAGGTGGTACTGACTTGCGGAGCGCGGGCGCCATCTTGTTGGTGAGCGTCCCGGCGACGATCATGCAGTCGGACTGTCGCGGGGATGGGCGGAAGATGACGCCGAAGCGGTCGAAGTCGTAGCGGGACGCGCCGGCGTGCATCATCTCGACGGCGCAGCAGGCCAGCCCGAACGTCATCGGCCAGATCGACCCCCTCCGCGCCCAGTTCATGAGGTCGTCCACCTTGGAGATCACGAACTCGGCCGCCTTCGACTGGGGCGCCGGCGGCGGCGCCCCCGCGTACCTCGCCGGGGCTGCGCCCGCCCCCGTAGCGGCCGCCGAGTACGCCCGCGGCGCCGAGAGCAGCGCCAGCCGCGCCGTCCGCGGGAGCAGCGCCAT
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| CDS seq | ATGGCGCTGCTCCCGCGGACGGCGCGGCTGGCGCTGCTCTCGGCGCCGCGGGCGTACTCGGCGGCCGCTACGGGGGCGGGCGCAGCCCCGGCGAGGTACGCGGGGGCGCCGCCGCCGGCGCCCCAGTCGAAGGCGGCCGAGTTCGTGATCTCCAAGGTGGACGACCTCATGAACTGGGCGCGGAGGGGGTCGATCTGGCCGATGACGTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACGCCGGCGCGTCCCGCTACGACTTCGACCGCTTCGGCGTCATCTTCCGCCCATCCCCGCGACAGTCCGACTGCATGATCGTCGCCGGGACGCTCACCAACAAGATGGCGCCCGCGCTCCGCAAGGTTTATGATCAGATGCCTGAGCCTCGGTGGGTTATTTCCATGGGCAGCTGTGCCAATGGTGGTGGATACTACCATTACTCCTACTCTGTTGTGCGTGGATGCGACCGTATTGTTCCTGTGGACATTTACGTCCCTGGATGCCCTCCAACTGCTGAAGCTTTACTGTATGGTGTCCTCCAGCTCCAAAAGAAGATCAACAGGCGCAAGGATTTCCTTCACTGGTGGACAAAGTGA
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| Protein seq | MALLPRTARLALLSAPRAYSAAATGAGAAPARYAGAPPPAPQSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHWWTK |
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| Function | NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [UniProtKB/Swiss-Prot:P42027] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0720300 | OsNip_01t0720300-00 | Chr01 | 30021240 | 30023716 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGCTGCTCCCGCGGACGGCGCGGCTGGCGCTGCTCTCGGCGCCGCGGGCGTACTCGGCGGCCGCTACGGGGGCGGGCGCAGCCCCGGCGAGGTACGCGGGGGCGCCGCCGCCGGCGCCCCAGTCGAAGGCGGCCGAGTTCGTGATCTCCAAGGTGGACGACCTCATGAACTGGGCGCGGAGGGGGTCGATCTGGCCGATGACGTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACGCCGGCGCGTCCCGCTACGACTTCGACCGCTTCGGCGTCATCTTCCGCCCATCCCCGCGACAGTCCGACTGCATGATCGTCGCCGGGACGCTCACCAACAAGATGGCGCCCGCGCTCCGCAAGGTTTATGATCAGATGCCTGAGCCTCGGTGGGTTATTTCCATGGGCAGCTGTGCCAATGGTGGTGGATACTACCATTACTCCTACTCTGTTGTGCGTGGATGCGACCGTATTGTTCCTGTGGACATTTACGTCCCTGGATGCCCTCCAACTGCTGAAGCTTTACTGTATGGTGTCCTCCAGCTCCAAAAGAAGATCAACAGGCGCAAGGATTTCCTTCACTGGTGGACAAAGTGA
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| Protein seq | MALLPRTARLALLSAPRAYSAAATGAGAAPARYAGAPPPAPQSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHWWTK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.224761 | 0.000000 | 14.549088 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0533700 | RBH | 9.426044 | 9.596715 | 19.875496 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g52214 | RBH | 0.648097 | 0.000000 | 3.735117 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0720300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031810 | RBH | 0.881927 | 40.107895 | 9.179811 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031390 | RBH | 0.376636 | 27.887695 | 7.626770 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031830 | RBH | 0.824968 | 64.929741 | 8.273483 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031050 | RBH | 0.347871 | 3.722887 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030720 | RBH | 6.109001 | 90.510475 | 31.002958 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0498000 | RBH | 20.339228 | 30.4442185 | 25.9753495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030450 | RBH | 0.089209 | 5.189820 | 4.767662 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0491200 | RBH | 16.947334 | 18.497586 | 33.769806 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0030700 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030640 | RBH | 0.714005 | 41.826321 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030940 | RBH | 0.0 | 62.641262 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031100 | RBH | 1.081412 | 4.284583 | 4.086166 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030870 | RBH | 0.0 | 27.590456 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031330 | RBH | 0.0 | 23.494459 | 5.919899 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030980 | RBH | 0.459176 | 72.315155 | 29.907967 |
