Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0709000 | OGI:01088740 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:29469565-29471507 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTTCTGGCCGGTATTACTACTGCCGGCAGTGTGAAGAAGAGGATATCAAGAGCCTAGCCTACACGGAGTACAGCGAGAGAGTGAGAGGTCAAGGGAGATGGGGCACCACTCCTGCTGCAACAAGCAGAAGGTCAGGAGGGGCCTGTGGTCACCAGAGGAAGACGAGAAGCTCGTCAAGTACATCTCCACGCACGGCCATGGCTGCTGGAGCTCCGTCCCCAGGCTAGCCGGTAAGTGCTTTATTACGTTTACATAGTTTTTTCAGTCGCAGATCAAAGTTCAGAGTTTCAGTTCAGAGTTTCTTCAGACTAGCTTAGTAGTTCAGTTCAGTCAGTTTACTTGGGTTTATGGCATCGATCGGTGAACGTGTTATCCATGTATTGTTGATGGCATGCAGGGTTGCAGAGATGTGGCAAGAGCTGCAGGCTGAGGTGGATCAACTACCTGAGGCCTGACCTGAAGAGGGGAAGCTTCTCGCAGCAGGAGGAGTCCCTCATCATTGAGCTCCACAGGGTGCTGGGCAACAGGTAATCCTTGGTCGGTCAGTCTCTACCTGCAAATCATCTCTGCGTTGCTGCTAACTGCATCATGTGATGAGGCTGTAACGTCCCATGTATGACAGTGTGACAGTTACTTATCTTTGCACGCTTTGGCCTATATTTGAGTAATGCACAATCGCATTAACTTGATCTGAGACAAAGGACGGGGCGCAAATGTGGCAATCGATCGAGATTTGAGCTGGCTAACATATGCTGTGTCACTGTGATTCACTGCATTGCATGCAGGTGGGCTCAGATTGCCAAGCACCTACCTGGTAGAACAGACAATGAGGTCAAGAACTTCTGGAACTCCACCATCAAGAAGAAGCTCATCTCCCAGGCCGTGGGTAGTCTGCACCCTTCCTCTGCAGGTAAAACCTGTGCTACATTTTTCACTTCTTTCTGAAAAAATGCTGCTTCTCATATGAATTTTCATACCTTTCGTTCTTGTTAGTTTACACATGGATCAGTACGAATATAATTTACTCACGACAAACATGTAATAGTGTACTGAATACTGAATAATTACTGATCGACTCGATGTTTGTTGCATTGATCTAGATTTGTACTACAACATTCTGGACGGAGCAGGACAGAGCATCGCAGCTGCGTCACTGAACGCGGTGGAGAATGCAGCTCACGGTGTCACTCAATCGCCGCCGTCTTCCGTGTACAACTCCGCGGCATGGGCCAGCTTCAGCTCCCACCAGCCAATCTTTCTCCCCGGCCACGGCGTCCACGGCTGCGGCGGCGGCGACCTTCAGTACGCCGCCGCCGTCGACGGGGAGTTCATCAGGCTGTGCCGAGCAGCGGAGGCGTACCAGCTGGAGAACGGCGCCGCTGGCATCGTCGGGGGTCAGTGCAAGCCAAGTGATCATCTCTTGGCTCCAGAGGGCGTCGTGGCCCGGAGTTGCCTCCCGGCGTTTGTCGAACAGAAGGGCGGCGGCGGCGGCGCTTTCTTGGCCGATCCGGCCATGGGTCCGGTGATGGACTTCATGGACGCCATCCTGGGGTCGTCGACGACGTCGGCGGCCAGTGCTTCATCCGTCGACAGCTTCTCGGCGAACACCGCCATGCAACCTCACTGGATTCCCTGAATATGCAATTATGCATGCATGTTCGGGGGTATTCTGGTCGGTGCTTGCGTAACACACGGGTTTATAAACTCGTTCTCGTCTTAATTAAGTTTCAAATATATATATAGATCTTAATTTATAAAATAACATGTATCTTAGGGTATATATGTTTCACATAAGTTACATGTAGATACATTTTTATATTTTTCATATAAATGTGTAGGACTGGTAAGTGGTAATTAAGTACGTATATAATGGGTGAGGTATCAGTTGCAGTTGAACTTCTGATTTACTATACTATATATGTATATGTGCTTCCTAATGTGC
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| CDS seq | ATGGGGCACCACTCCTGCTGCAACAAGCAGAAGGTCAGGAGGGGCCTGTGGTCACCAGAGGAAGACGAGAAGCTCGTCAAGTACATCTCCACGCACGGCCATGGCTGCTGGAGCTCCGTCCCCAGGCTAGCCGGGTTGCAGAGATGTGGCAAGAGCTGCAGGCTGAGGTGGATCAACTACCTGAGGCCTGACCTGAAGAGGGGAAGCTTCTCGCAGCAGGAGGAGTCCCTCATCATTGAGCTCCACAGGGTGCTGGGCAACAGGTGGGCTCAGATTGCCAAGCACCTACCTGGTAGAACAGACAATGAGGTCAAGAACTTCTGGAACTCCACCATCAAGAAGAAGCTCATCTCCCAGGCCGTGGGTAGTCTGCACCCTTCCTCTGCAGATTTGTACTACAACATTCTGGACGGAGCAGGACAGAGCATCGCAGCTGCGTCACTGAACGCGGTGGAGAATGCAGCTCACGGTGTCACTCAATCGCCGCCGTCTTCCGTGTACAACTCCGCGGCATGGGCCAGCTTCAGCTCCCACCAGCCAATCTTTCTCCCCGGCCACGGCGTCCACGGCTGCGGCGGCGGCGACCTTCAGTACGCCGCCGCCGTCGACGGGGAGTTCATCAGGCTGTGCCGAGCAGCGGAGGCGTACCAGCTGGAGAACGGCGCCGCTGGCATCGTCGGGGGTCAGTGCAAGCCAAGTGATCATCTCTTGGCTCCAGAGGGCGTCGTGGCCCGGAGTTGCCTCCCGGCGTTTGTCGAACAGAAGGGCGGCGGCGGCGGCGCTTTCTTGGCCGATCCGGCCATGGGTCCGGTGATGGACTTCATGGACGCCATCCTGGGGTCGTCGACGACGTCGGCGGCCAGTGCTTCATCCGTCGACAGCTTCTCGGCGAACACCGCCATGCAACCTCACTGGATTCCCTGA
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| Protein seq | MGHHSCCNKQKVRRGLWSPEEDEKLVKYISTHGHGCWSSVPRLAGLQRCGKSCRLRWINYLRPDLKRGSFSQQEESLIIELHRVLGNRWAQIAKHLPGRTDNEVKNFWNSTIKKKLISQAVGSLHPSSADLYYNILDGAGQSIAAASLNAVENAAHGVTQSPPSSVYNSAAWASFSSHQPIFLPGHGVHGCGGGDLQYAAAVDGEFIRLCRAAEAYQLENGAAGIVGGQCKPSDHLLAPEGVVARSCLPAFVEQKGGGGGAFLADPAMGPVMDFMDAILGSSTTSAASASSVDSFSANTAMQPHWIP |
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| Function | Transcription factor MYB26 [UniProtKB/Swiss-Prot:Q9SPG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0709000 | OsNip_01t0709000-01 | Chr01 | 29469565 | 29471507 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGGCACCACTCCTGCTGCAACAAGCAGAAGGTCAGGAGGGGCCTGTGGTCACCAGAGGAAGACGAGAAGCTCGTCAAGTACATCTCCACGCACGGCCATGGCTGCTGGAGCTCCGTCCCCAGGCTAGCCGGGTTGCAGAGATGTGGCAAGAGCTGCAGGCTGAGGTGGATCAACTACCTGAGGCCTGACCTGAAGAGGGGAAGCTTCTCGCAGCAGGAGGAGTCCCTCATCATTGAGCTCCACAGGGTGCTGGGCAACAGGTGGGCTCAGATTGCCAAGCACCTACCTGGTAGAACAGACAATGAGGTCAAGAACTTCTGGAACTCCACCATCAAGAAGAAGCTCATCTCCCAGGCCGTGGGTAGTCTGCACCCTTCCTCTGCAGATTTGTACTACAACATTCTGGACGGAGCAGGACAGAGCATCGCAGCTGCGTCACTGAACGCGGTGGAGAATGCAGCTCACGGTGTCACTCAATCGCCGCCGTCTTCCGTGTACAACTCCGCGGCATGGGCCAGCTTCAGCTCCCACCAGCCAATCTTTCTCCCCGGCCACGGCGTCCACGGCTGCGGCGGCGGCGACCTTCAGTACGCCGCCGCCGTCGACGGGGAGTTCATCAGGCTGTGCCGAGCAGCGGAGGCGTACCAGCTGGAGAACGGCGCCGCTGGCATCGTCGGGGGTCAGTGCAAGCCAAGTGATCATCTCTTGGCTCCAGAGGGCGTCGTGGCCCGGAGTTGCCTCCCGGCGTTTGTCGAACAGAAGGGCGGCGGCGGCGGCGCTTTCTTGGCCGATCCGGCCATGGGTCCGGTGATGGACTTCATGGACGCCATCCTGGGGTCGTCGACGACGTCGGCGGCCAGTGCTTCATCCGTCGACAGCTTCTCGGCGAACACCGCCATGCAACCTCACTGGATTCCCTGA
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| Protein seq | MGHHSCCNKQKVRRGLWSPEEDEKLVKYISTHGHGCWSSVPRLAGLQRCGKSCRLRWINYLRPDLKRGSFSQQEESLIIELHRVLGNRWAQIAKHLPGRTDNEVKNFWNSTIKKKLISQAVGSLHPSSADLYYNILDGAGQSIAAASLNAVENAAHGVTQSPPSSVYNSAAWASFSSHQPIFLPGHGVHGCGGGDLQYAAAVDGEFIRLCRAAEAYQLENGAAGIVGGQCKPSDHLLAPEGVVARSCLPAFVEQKGGGGGAFLADPAMGPVMDFMDAILGSSTTSAASASSVDSFSANTAMQPHWIP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.188536 | 0.446360 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0543600 | SBH | 0.416626 | 0.562642 | 2.897123 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g51260 | RBH | 0.0 | 0.126806 | 0.345484 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0709000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031010 | RBH | 0.0 | 0.0 | 2.395043 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0030610 | RBH | 0.0 | 0.0 | 0.516252 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030980 | RBH | 0.0 | 0.0 | 1.246419 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030250 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029920 | RBH | 0.0 | 0.0 | 2.559312 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0487200 | RBH | 0.5611715 | 0 | 0.2143145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0029640 | RBH | 0.0 | 0.0 | 0.620722 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0478900 | RBH | 0.613578 | 0 | 1.6748995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0030280 | RBH | 0.0 | 0.0 | 0.347748 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G030520 | RBH | 0.0 | 0.0 | 1.971000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030200 | RBH | 0.0 | 0.0 | 1.277935 |
