Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0695900 | OGI:01087030 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:28796526-28797649 | ||||||||
| Gene Symbol | OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C | ||||||||||
| DNA seq | AAGCTAGCTCGCGCGCAAATTAATCGCCGATCGATCCTACGATGAAGCGGAAGCGGCCGGCGGCGCTGCGCGGCGGGGAGGAGGCGGCGGCGGCGGCGCTGAAGCGTGGGCCGTGGACGCCCGAGGAGGACGAGGTGCTGGCGCGGTTCGTGGCGCGGGAGGGGTGCGACCGGTGGCGCACGCTGCCGCGGCGCGCGGGCCTGCTGCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACATCAAGCGCTGCCCCATCGCCGACGACGAGGAGGACCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTAAGCAATTCTTGATGCACCGAAGGCGATCGCTCGTGTGCAAAGGTCGTACTGCTCCTCCGGTGAGGTGACCGCCCGTGCATGTGCTTGTAGGTGGTCGCTGATCGCCGGGAGGTTGCCGGGGCGCACGGACAACGAGATCAAGAACTACTGGAACTCGCATCTCAGCAAGAAGCTCATCGCGCAGGGCATCGACCCGCGGACGCACAAGCCGCTGACGGCCGCCGCCGATCACTCCAACGCCGCCGCTGCCGTCGCCGCCACTTCTTACAAGAAGGCGGTGCCGGCCAAGCCGCCGAGGACGGCATCCTCGCCGGCCGCTGGCATTGAGTGCAGCGACGATCGTGCCCGACCGGCCGACGGTGGCGGTGACTTCGCAGCGATGGTGAGCGCCGCCGATGCCGAGGGATTCGAAGGAGGATTTGGCGATCAGTTCTGTGCCGAGGATGCAGTTCATGGTGGCTTCGACATGGGTTCCGCTTCCGCCATGGTGGGTGACGACGACTTCTCCTCGTTTCTTGATTCTCTGATCAACGACGAGCAGTTAGGCGATCTCTTCGTCGTCGAGGGCAACGATCACGAGCATGGCAATGGTGAGATTGGTCATGGAGACGTCATGGAATCCAAACAGTAATCTTTCGGGAGATTGATCAGGGAATAAGTTGACCATGAGAAAACATGTAAGAACAGCTTGTCTGCTGAGTCATGACCGGTGATGTGTATGTGATGGAAGAAAACGTATGTACGACTTAATGCTTGCACCTATACTACTGCTGTGTGCATTATTCGAGTGATC
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| CDS seq | ATGAAGCGGAAGCGGCCGGCGGCGCTGCGCGGCGGGGAGGAGGCGGCGGCGGCGGCGCTGAAGCGTGGGCCGTGGACGCCCGAGGAGGACGAGGTGCTGGCGCGGTTCGTGGCGCGGGAGGGGTGCGACCGGTGGCGCACGCTGCCGCGGCGCGCGGGCCTGCTGCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACATCAAGCGCTGCCCCATCGCCGACGACGAGGAGGACCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCGCTGATCGCCGGGAGGTTGCCGGGGCGCACGGACAACGAGATCAAGAACTACTGGAACTCGCATCTCAGCAAGAAGCTCATCGCGCAGGGCATCGACCCGCGGACGCACAAGCCGCTGACGGCCGCCGCCGATCACTCCAACGCCGCCGCTGCCGTCGCCGCCACTTCTTACAAGAAGGCGGTGCCGGCCAAGCCGCCGAGGACGGCATCCTCGCCGGCCGCTGGCATTGAGTGCAGCGACGATCGTGCCCGACCGGCCGACGGTGGCGGTGACTTCGCAGCGATGGTGAGCGCCGCCGATGCCGAGGGATTCGAAGGAGGATTTGGCGATCAGTTCTGTGCCGAGGATGCAGTTCATGGTGGCTTCGACATGGGTTCCGCTTCCGCCATGGTGGGTGACGACGACTTCTCCTCGTTTCTTGATTCTCTGATCAACGACGAGCAGTTAGGCGATCTCTTCGTCGTCGAGGGCAACGATCACGAGCATGGCAATGGTGAGATTGGTCATGGAGACGTCATGGAATCCAAACAGTAA
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| Protein seq | MKRKRPAALRGGEEAAAAALKRGPWTPEEDEVLARFVAREGCDRWRTLPRRAGLLRCGKSCRLRWMNYLRPDIKRCPIADDEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLIAQGIDPRTHKPLTAAADHSNAAAAVAATSYKKAVPAKPPRTASSPAAGIECSDDRARPADGGGDFAAMVSAADAEGFEGGFGDQFCAEDAVHGGFDMGSASAMVGDDDFSSFLDSLINDEQLGDLFVVEGNDHEHGNGEIGHGDVMESKQ |
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| Function | Transcription repressor MYB5 [UniProtKB/Swiss-Prot:Q38850] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0695900 | OsNip_01t0695900-01 | Chr01 | 28796526 | 28797649 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAGCGGAAGCGGCCGGCGGCGCTGCGCGGCGGGGAGGAGGCGGCGGCGGCGGCGCTGAAGCGTGGGCCGTGGACGCCCGAGGAGGACGAGGTGCTGGCGCGGTTCGTGGCGCGGGAGGGGTGCGACCGGTGGCGCACGCTGCCGCGGCGCGCGGGCCTGCTGCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACATCAAGCGCTGCCCCATCGCCGACGACGAGGAGGACCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCGCTGATCGCCGGGAGGTTGCCGGGGCGCACGGACAACGAGATCAAGAACTACTGGAACTCGCATCTCAGCAAGAAGCTCATCGCGCAGGGCATCGACCCGCGGACGCACAAGCCGCTGACGGCCGCCGCCGATCACTCCAACGCCGCCGCTGCCGTCGCCGCCACTTCTTACAAGAAGGCGGTGCCGGCCAAGCCGCCGAGGACGGCATCCTCGCCGGCCGCTGGCATTGAGTGCAGCGACGATCGTGCCCGACCGGCCGACGGTGGCGGTGACTTCGCAGCGATGGTGAGCGCCGCCGATGCCGAGGGATTCGAAGGAGGATTTGGCGATCAGTTCTGTGCCGAGGATGCAGTTCATGGTGGCTTCGACATGGGTTCCGCTTCCGCCATGGTGGGTGACGACGACTTCTCCTCGTTTCTTGATTCTCTGATCAACGACGAGCAGTTAGGCGATCTCTTCGTCGTCGAGGGCAACGATCACGAGCATGGCAATGGTGAGATTGGTCATGGAGACGTCATGGAATCCAAACAGTAA
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| Protein seq | MKRKRPAALRGGEEAAAAALKRGPWTPEEDEVLARFVAREGCDRWRTLPRRAGLLRCGKSCRLRWMNYLRPDIKRCPIADDEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLIAQGIDPRTHKPLTAAADHSNAAAAVAATSYKKAVPAKPPRTASSPAAGIECSDDRARPADGGGDFAAMVSAADAEGFEGGFGDQFCAEDAVHGGFDMGSASAMVGDDDFSSFLDSLINDEQLGDLFVVEGNDHEHGNGEIGHGDVMESKQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.632834 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0553400 | RBH | 0.0 | 0.0 | 1.415371 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g50110 | RBH | 0.0 | 0.0 | 0.394596 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0695900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030150 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029760 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030120 | RBH | 0.0 | 0.0 | 1.733282 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029380 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029060 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0478100 | RBH | 0 | 0.036221 | 0.5935705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028780 | RBH | 0.0 | 0.0 | 0.382748 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0468700 | RBH | 0.091195 | 0.013215 | 0.019509 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029040 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029410 | RBH | 0.0 | 0.0 | 0.610773 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029660 | RBH | 0.0 | 0.0 | 0.787141 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029340 | RBH | 0.0 | 0.0 | 0.0 |
