Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0687400 | OGI:01085880 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:28354882-28356067 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGATGTAACATGGACTGATGGACATGGTTCATTACAGACAGTTTAGATGCAATTTGGACATAGTTCATTACAGACATAGACACATAGTTTAAATGCAACTTGCAAAATTAAATCAACAAGGTCCGGTCGGTGTACATTCTATCCCTACCGGAGGGAGGCCGGAGCACGGAAAACATCCATAAAACTATTTAAAAAGGCTATGCTTATTTCAAACGCCTGTGAATATGAATGGTTCGTAGGCGTAGCTTAATTTGTTTCAAACTTTCCCCTTCAACTTGGCGCCATAACCAGCGGTCACGTCTCTCCAGCGATTCCACAGCATGACTCCGCCGTAGTTCGCCGCCGCGCCCTCCACCGCCGGTAGCACCTGCGACAGCAGCGTGTCCGCGTCGATGTAGCCTCCGCTCGGTGCAGCGGCCGGCGCCGTCGGCAGGCCCAGGAAGACGTCCGCGGGCGCCGGCACGCCGCTCGTCCACTGCGCCCACGCGGCCTGCAGCGCGCTCGCGTCGCCGCTGGCGTACTGGCACTGCCGGTTGTTGTAGAACTGCACCCAAACGTGGCTGAACACCCCGGTCTTGATCGCCGCGTCGAGGTGGGCGTCCGGGTACGGGCACTGCGGCGCCGCCGTGAGCACGCACGCGCCGTTGCATTTCGACGAGAGGGCCATCGCCAGCTCGTCGTAGTGGTCACCGTCCTTCTCTATGTCGAAGTCGATGCCGTCGAGCACCGCGTCGCCGAGGGGGCGCGAGTCCGAGCTGCCGCCGAGGAAGGTGTTCCAGAGGTAGTCGGCGACGCCACGCGCGTCGTCGGCGGAGGAGAGGGAGTACTGACCTCTCTCGCCGCCGAGGGAGAGGAGCACCTTCACGCCGCTCTGCTGGCAGGAGCTGATCTCGGAGCTGAGCGACTTGCAGGTCCCCGCGTCCGGATTGCAGTGGGCGGCGAGGTTGAGCACCGGGGTAAGGCCGCTGCCGTAGACGTTGAGGAAGGCGATGTTGACGAAGTCGTACAGGCCGGTGGCGCATGTCTCGGCGAGGGTGCCGTCGCCGTTGCCCGCCCCCTGCCCCCAGTAGACGGCCACCTTGCCGGCGTTGGAGACGGCCGCGAAGGCGGCCAGGAAGGAGACGGCGAGCAAGAATTGAGAAGAGCAGCAGAGCCTGGGAGCCATTTCTAGCTCCGTCTTGCAC
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| CDS seq | ATGGCTCCCAGGCTCTGCTGCTCTTCTCAATTCTTGCTCGCCGTCTCCTTCCTGGCCGCCTTCGCGGCCGTCTCCAACGCCGGCAAGGTGGCCGTCTACTGGGGGCAGGGGGCGGGCAACGGCGACGGCACCCTCGCCGAGACATGCGCCACCGGCCTGTACGACTTCGTCAACATCGCCTTCCTCAACGTCTACGGCAGCGGCCTTACCCCGGTGCTCAACCTCGCCGCCCACTGCAATCCGGACGCGGGGACCTGCAAGTCGCTCAGCTCCGAGATCAGCTCCTGCCAGCAGAGCGGCGTGAAGGTGCTCCTCTCCCTCGGCGGCGAGAGAGGTCAGTACTCCCTCTCCTCCGCCGACGACGCGCGTGGCGTCGCCGACTACCTCTGGAACACCTTCCTCGGCGGCAGCTCGGACTCGCGCCCCCTCGGCGACGCGGTGCTCGACGGCATCGACTTCGACATAGAGAAGGACGGTGACCACTACGACGAGCTGGCGATGGCCCTCTCGTCGAAATGCAACGGCGCGTGCGTGCTCACGGCGGCGCCGCAGTGCCCGTACCCGGACGCCCACCTCGACGCGGCGATCAAGACCGGGGTGTTCAGCCACGTTTGGGTGCAGTTCTACAACAACCGGCAGTGCCAGTACGCCAGCGGCGACGCGAGCGCGCTGCAGGCCGCGTGGGCGCAGTGGACGAGCGGCGTGCCGGCGCCCGCGGACGTCTTCCTGGGCCTGCCGACGGCGCCGGCCGCTGCACCGAGCGGAGGCTACATCGACGCGGACACGCTGCTGTCGCAGGTGCTACCGGCGGTGGAGGGCGCGGCGGCGAACTACGGCGGAGTCATGCTGTGGAATCGCTGGAGAGACGTGACCGCTGGTTATGGCGCCAAGTTGAAGGGGAAAGTTTGA
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| Protein seq | MAPRLCCSSQFLLAVSFLAAFAAVSNAGKVAVYWGQGAGNGDGTLAETCATGLYDFVNIAFLNVYGSGLTPVLNLAAHCNPDAGTCKSLSSEISSCQQSGVKVLLSLGGERGQYSLSSADDARGVADYLWNTFLGGSSDSRPLGDAVLDGIDFDIEKDGDHYDELAMALSSKCNGACVLTAAPQCPYPDAHLDAAIKTGVFSHVWVQFYNNRQCQYASGDASALQAAWAQWTSGVPAPADVFLGLPTAPAAAPSGGYIDADTLLSQVLPAVEGAAANYGGVMLWNRWRDVTAGYGAKLKGKV |
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| Function | Acidic endochitinase [UniProtKB/Swiss-Prot:P36908] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0687400 | OsNip_01t0687400-01 | Chr01 | 28354882 | 28356067 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTCCCAGGCTCTGCTGCTCTTCTCAATTCTTGCTCGCCGTCTCCTTCCTGGCCGCCTTCGCGGCCGTCTCCAACGCCGGCAAGGTGGCCGTCTACTGGGGGCAGGGGGCGGGCAACGGCGACGGCACCCTCGCCGAGACATGCGCCACCGGCCTGTACGACTTCGTCAACATCGCCTTCCTCAACGTCTACGGCAGCGGCCTTACCCCGGTGCTCAACCTCGCCGCCCACTGCAATCCGGACGCGGGGACCTGCAAGTCGCTCAGCTCCGAGATCAGCTCCTGCCAGCAGAGCGGCGTGAAGGTGCTCCTCTCCCTCGGCGGCGAGAGAGGTCAGTACTCCCTCTCCTCCGCCGACGACGCGCGTGGCGTCGCCGACTACCTCTGGAACACCTTCCTCGGCGGCAGCTCGGACTCGCGCCCCCTCGGCGACGCGGTGCTCGACGGCATCGACTTCGACATAGAGAAGGACGGTGACCACTACGACGAGCTGGCGATGGCCCTCTCGTCGAAATGCAACGGCGCGTGCGTGCTCACGGCGGCGCCGCAGTGCCCGTACCCGGACGCCCACCTCGACGCGGCGATCAAGACCGGGGTGTTCAGCCACGTTTGGGTGCAGTTCTACAACAACCGGCAGTGCCAGTACGCCAGCGGCGACGCGAGCGCGCTGCAGGCCGCGTGGGCGCAGTGGACGAGCGGCGTGCCGGCGCCCGCGGACGTCTTCCTGGGCCTGCCGACGGCGCCGGCCGCTGCACCGAGCGGAGGCTACATCGACGCGGACACGCTGCTGTCGCAGGTGCTACCGGCGGTGGAGGGCGCGGCGGCGAACTACGGCGGAGTCATGCTGTGGAATCGCTGGAGAGACGTGACCGCTGGTTATGGCGCCAAGTTGAAGGGGAAAGTTTGA
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| Protein seq | MAPRLCCSSQFLLAVSFLAAFAAVSNAGKVAVYWGQGAGNGDGTLAETCATGLYDFVNIAFLNVYGSGLTPVLNLAAHCNPDAGTCKSLSSEISSCQQSGVKVLLSLGGERGQYSLSSADDARGVADYLWNTFLGGSSDSRPLGDAVLDGIDFDIEKDGDHYDELAMALSSKCNGACVLTAAPQCPYPDAHLDAAIKTGVFSHVWVQFYNNRQCQYASGDASALQAAWAQWTSGVPAPADVFLGLPTAPAAAPSGGYIDADTLLSQVLPAVEGAAANYGGVMLWNRWRDVTAGYGAKLKGKV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.617564 | 0.633327 | 0.501467 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49320 | RBH | 0.369909 | 0.377293 | 0.114338 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0687400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029590 | RBH | 0.015917 | 4.932477 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029180 | RBH | 0.0 | 5.112253 | 0.663609 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029570 | RBH | 0.122731 | 4.945913 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028790 | RBH | 0.067023 | 0.064892 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028470 | RBH | 0.0 | 7.094420 | 6.796454 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0471000 | RBH | 2.4672845 | 33.7253055 | 0.217735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028220 | RBH | 0.284432 | 0.160095 | 0.027386 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0460100 | RBH | 2.782365 | 11.031857 | 0.1768655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028500 | RBH | 0.081179 | 0.267346 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028380 | RBH | 0.0 | 2.482303 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028830 | RBH | 0.075874 | 0.247842 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028620 | RBH | 0.0 | 1.247666 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029090 | RBH | 0.059968 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028760 | RBH | 0.0 | 10.756775 | 0.760559 |
