Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0685400 | OGI:01085570 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:28249922-28251613 | ||||||||
| Gene Symbol | RGN1, OsRGN1 | ||||||||||
| DNA seq | GCCCTCAGCCTGCCCAGCTGCCACGCTGCATCGCACGCACGCCGCTCCAAGCAGATACGCGCCTGCAGGCCGCAGCTGCAGCAGCAGCCACGCGACACGCTCCTCCACTCCTCTCCCGTGCGTCGTGGCAGGGAGAGAGAGCCGGAGGGAGAGTGAGTGAGAGAACGGTCAGCTCGCTCTACCCCGCGCGCCCACGTCGCGTGCTTGGATTGGTACGAGGCCGGCGGGATGGGGAGGGCGCCGTGCTGCGACAAGGCGAGCGTGAAGAGGGGGCCGTGGTCGCCGGAGGAGGACGAGCTGCTGCGGAGCTACGTCCGCAGCCACGGCACCGGTGGCAACTGGATCGCGCTCCCGCAGAAAGCAGGTGCGTACGTACCCCCGGTTTATCGTTCTCGTTTTTGGCTAGCCGGCCGGCTTGGTGACTGAGAGAGGTCGTGACCGATCGTGGCAGGGCTGAACCGGTGCGGGAAGAGCTGTAGGCTGCGGTGGCTCAACTACCTCCGCCCGGACATCAAGCACGGCGGCTACACCGACCAGGAGGACCGGATCATCTGTTCCCTCTACAACTCCATCGGAAGCAGGTATTGCTACAGATCTGCACGATATGTGTCAATTATCAGAGCTAGAGTTTAGGCTAGTCTGCAGGGTGGTGTGTAACAGCTATAGCCTACAAATCGCAGGTGGTCCATCATCGCGTCGAAGCTGCCCGGCCGGACGGACAACGACGTCAAGAATTACTGGAATACCAAGCTCAAGAAGAAGGCCATGGCCATGCATCATCATCATCAGCCGCCGCCGCCGCAGCAGCAACACTACCACCACCACCACCACCACCGTGTCGCCGGCGGTGGCGCGCGCGTCACGCTCGTGTCGCCTCCGCCCGCCCCGCAGAGCCAATGCGCGTCCATGCAGCCGTCGCCGGCGTCCGCCTCCTCGTCCGGCGGCGACGCGTGCAGCTTCGGCGCCGCCGCCATGTACTCCCCCTCCCCGTCAACCCAGCAGGCGCCACAGGCGGCGACGCTCGCGGTCGCGGGGTACACCTCCGTGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGCGCAGCGCTCGCCGCTCGACGAGCTGATCTGCCAGGTGCCACCACCTCCCACTACTACCGCCGCCGACTGCTGGGCCAGCGGCGTGACCCTCGACGACGTGTTCTTGCCCGAGCTCGTCGGAGCCGGCGAGTTCCCCAACGGCGACCTCTTCGGCGGGTTCGGCCCGCTGCTCCAGGACAGGTCGTCCATGGAGCTCTCCGCGTGCTACTTCCCCAACGCCGCGGCGGCGGAGATGTGGCCGGCGGCCACGGACATCGTCAAGCCGGCCGGGCTGTGCCACAGCCTGACATGACAAGTCAGACACTAATGATCCATCCATCCAACGAGAGTGCTCGAGTGATCCATGACGACTAGTCTCAAGTTGTTGCGTGGCTAGCTTCTTCTTGATTGATTACCTGATCATCTTTTTCTCCCCCTTCTTCCCGACGAGATTATTACATGTACATTATCCTATCTGTACTACGGCTGTTCCACAGACAGGTTAATTAGATGTTGATTGCCAATTAGCAACTGTTCTGTTCTTCCGCCTACCAGCCAGTAGTCCAATTACTGTAAAATTTTCAGCAAGCGTGTGACTATTTTCCTTCCATGCGACAAGGACAGGCTTTCTTTC
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| CDS seq | CCTACAAATCGCAGGTGGTCCATCATCGCGTCGAAGCTGCCCGGCCGGACGGACAACGACGTCAAGAATTACTGGAATACCAAGCTCAAGAAGAAGGCCATGGCCATGCATCATCATCATCAGCCGCCGCCGCCGCAGCAGCAACACTACCACCACCACCACCACCACCGTGTCGCCGGCGGTGGCGCGCGCGTCACGCTCGTGTCGCCTCCGCCCGCCCCGCAGAGCCAATGCGCGTCCATGCAGCCGTCGCCGGCGTCCGCCTCCTCGTCCGGCGGCGACGCGTGCAGCTTCGGCGCCGCCGCCATGTACTCCCCCTCCCCGTCAACCCAGCAGGCGCCACAGGCGGCGACGCTCGCGGTCGCGGGGTACACCTCCGTGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGCGCAGCGCTCGCCGCTCGACGAGCTGATCTGCCAGGTGCCACCACCTCCCACTACTACCGCCGCCGACTGCTGGGCCAGCGGCGTGACCCTCGACGACGTGTTCTTGCCCGAGCTCGTCGGAGCCGGCGAGTTCCCCAACGGCGACCTCTTCGGCGGGTTCGGCCCGCTGCTCCAGGACAGGTCGTCCATGGAGCTCTCCGCGTGCTACTTCCCCAACGCCGCGGCGGCGGAGATGTGGCCGGCGGCCACGGACATCGTCAAGCCGGCCGGGCTGTGCCACAGCCTGACATGA
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| Protein seq | PTNRRWSIIASKLPGRTDNDVKNYWNTKLKKKAMAMHHHHQPPPPQQQHYHHHHHHRVAGGGARVTLVSPPPAPQSQCASMQPSPASASSSGGDACSFGAAAMYSPSPSTQQAPQAATLAVAGYTSVATAAAAAAVAAQRSPLDELICQVPPPPTTTAADCWASGVTLDDVFLPELVGAGEFPNGDLFGGFGPLLQDRSSMELSACYFPNAAAAEMWPAATDIVKPAGLCHSLT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0685400 | OsNip_01t0685400-01 | Chr01 | 28250506 | 28251508 | + | RAP2018-11-26 | ||
| CDS seq | CCTACAAATCGCAGGTGGTCCATCATCGCGTCGAAGCTGCCCGGCCGGACGGACAACGACGTCAAGAATTACTGGAATACCAAGCTCAAGAAGAAGGCCATGGCCATGCATCATCATCATCAGCCGCCGCCGCCGCAGCAGCAACACTACCACCACCACCACCACCACCGTGTCGCCGGCGGTGGCGCGCGCGTCACGCTCGTGTCGCCTCCGCCCGCCCCGCAGAGCCAATGCGCGTCCATGCAGCCGTCGCCGGCGTCCGCCTCCTCGTCCGGCGGCGACGCGTGCAGCTTCGGCGCCGCCGCCATGTACTCCCCCTCCCCGTCAACCCAGCAGGCGCCACAGGCGGCGACGCTCGCGGTCGCGGGGTACACCTCCGTGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGCGCAGCGCTCGCCGCTCGACGAGCTGATCTGCCAGGTGCCACCACCTCCCACTACTACCGCCGCCGACTGCTGGGCCAGCGGCGTGACCCTCGACGACGTGTTCTTGCCCGAGCTCGTCGGAGCCGGCGAGTTCCCCAACGGCGACCTCTTCGGCGGGTTCGGCCCGCTGCTCCAGGACAGGTCGTCCATGGAGCTCTCCGCGTGCTACTTCCCCAACGCCGCGGCGGCGGAGATGTGGCCGGCGGCCACGGACATCGTCAAGCCGGCCGGGCTGTGCCACAGCCTGACATGA
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| Protein seq | PTNRRWSIIASKLPGRTDNDVKNYWNTKLKKKAMAMHHHHQPPPPQQQHYHHHHHHRVAGGGARVTLVSPPPAPQSQCASMQPSPASASSSGGDACSFGAAAMYSPSPSTQQAPQAATLAVAGYTSVATAAAAAAVAAQRSPLDELICQVPPPPTTTAADCWASGVTLDDVFLPELVGAGEFPNGDLFGGFGPLLQDRSSMELSACYFPNAAAAEMWPAATDIVKPAGLCHSLT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0685400 | OsNip_01t0685400-02 | Chr01 | 28249922 | 28251613 | + | IsoSeq | ||
| CDS seq | CCCTCAGCCTGCCCAGCTGCCACGCTGCATCGCACGCACGCCGCTCCAAGCAGATACGCGCCTGCAGGCCGCAGCTGCAGCAGCAGCCACGCGACACGCTCCTCCACTCCTCTCCCGTGCGTCGTGGCAGGGAGAGAGAGCCGGAGGGAGAGT |
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| Protein seq | PSACPAATLHRTHAAPSRYAPAGRSCSSSHATRSSTPLPCVVAGRESRRES |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0553400 | SBH | 0.0 | 0.0 | 1.415371 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49160 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0685400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029450 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029040 | RBH | 0.0 | 0.0 | 0.242768 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029430 | RBH | 0.0 | 0.0 | 0.595055 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028650 | RBH | 0.025285 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028340 | RBH | 0.0 | 0.0 | 3.331009 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0469400 | RBH | 1.1540955 | 23.496973 | 3.2128515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028080 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0458400 | RBH | 1.9116135 | 34.79023 | 0.485626 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028370 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028240 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028540 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028470 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028940 | RBH | 0.0 | 0.0 | 0.196220 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028610 | RBH | 0.0 | 0.0 | 0.0 |
