Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0678600 | OGI:01084740 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:27922318-27924335 | ||||||||
| Gene Symbol | RPS20, OsRPS20, rps20, ASL1 | ||||||||||
| DNA seq | GGTGCTCCTCGAGCTCACTCCGCACCGCAGCCATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTACCACCTCCCTCTCTCTCTCTCCTCGAGAGTGTTCTTCCTTTGCTCTTATTCGTCGGTGATGCGAAATGCCTTGTTCAGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTAGTACATAAAATGTGGTGCTGCCCTTTCTCGCATTGCCTATGATCCAGAGCTTTCCAATGGTTCCATCCCACTGTAAAAAAAAATGATATAGGAGTACTTAGTTGCACATTGCACGATACACTGTGCAGAGAGAATGGGAAATTAGGCGTAATTAGCTGCGTCAGTGCGTCAATCAGCTCATGAGCAGAGTTTCTTGTTAGTACGCCTTCTTGGAAATGTAGATGGATTTATGTAATGTCCACTGTCCACTGTCAAGCTCCAAAAATGGAGTGAATGTGATTTTAAAAGGTGCTGCTTATTTGAATTATAGTATCAAACTAGTAATGTACCCATGCTAACGCTACGGCGATACTATGTGATAATGTAAATCATACAACCAAAAGATAGTATGTATTTTAGCAAATCAGATTAACTTAAGATACACAAAAAAGAAAAAAGACTAAAGATAAGAAGAGTTATCTTATTGTTACTCTCCCTAGTTATACATAGTTGACGTGTACTCTTCAGTCATAAATATTTGATGTTATGGCACAGTAAAACTTTAAGAGTCTGACTTGCAACATAACAAAATCAGTCTTATATCATAATCGATCAGATTTTGTAGCTTAGCATCATATAATTTGTTTTCATGATCGTAATGAGGCAGTTCAAACTAATTTATACCATTGATACCATTTTACTATAAGACCACATCGAGACAATGGTAATATTCAATATCAATGGATTATAACATCATGTTCGCCAATCATCTACATAATGTAGTAGTTACATTGACATCTCAAAGGAGAAAACTACTAAACTGAATTTAATTTCGCAGTTACCTTTCATGTGAACTATAGTTATTCTGTCAATCTAATGGATATGCTATTATGAAATTTACCTGTTAGAGAAGCAAGAGGGGTTCATTTGTTGTACATATATTCCTTTTGGTTCCTCTAAAATAAGTTACACTTTTATGCAGCATTCAATATTATAAGTTCTTTCTATGGATATGAAATACCATAAGCCTTGTTCTTTGATTAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAGTCTATTGACAAATCGTCTTCAGGAATTCGCAGCAGATTCATTGTCAACACGTCTTGCCAATTTTGGACATGCATATGTTGTTTAAGGAATTAAATAGCTTTGTTATATTCTCTCCATTCCAAGCGATGTGTATACCTTTGGTCCATGTTATGTGTTCATGTTCTTGCTCTGGAAGCCTTGAAACAGAACTGGGCCAATACTTTTCTCCCACTTCTGTTATCCTTCACATCAGTGTTGTAAAATGACAAGCTGAAATATTTTTTTTCTATGGTAAGGATGTTTTCAAAG
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| CDS seq | ATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAG
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| Protein seq | MATATSTLFSLSSLSASLPSPAQPAPASLSLRAVSPRARLSASYAAFPIGGIGAWAAATPASSGRWRRRGLEVVCEAAKTGTATGRRPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWYVPNAEPAATS |
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| Function | 30S ribosomal protein S20, chloroplastic [UniProtKB/Swiss-Prot:P82130] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0678600 | OsNip_01t0678600-01 | Chr01 | 27922318 | 27924335 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGACCGCCACCTCCACGCTCTTCTCCCTCTCCTCCCTCTCCGCCTCTCTCCCTTCCCCCGCGCAGCCAGCCCCGGCGTCTCTCTCCCTCCGCGCCGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAG
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| Protein seq | MATATSTLFSLSSLSASLPSPAQPAPASLSLRAVSPRARLSASYAAFPIGGIGAWAAATPASSGRWRRRGLEVVCEAAKTGTATGRRPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWYVPNAEPAATS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0678600 | OsNip_01t0678600-02 | Chr01 | 27922530 | 27923176 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCTTGTTCAGGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGCGACCGGGAGGCGCCCGGACTCGGTCAAGAAGAGGGAGCGGCAGAACGACCGGCACCGCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGGTAGTACATAAAATGTGGTGCTGCCCTTTCTCGCATTGCCTATGA
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| Protein seq | MPCSGGIGAWAAATPASSGRWRRRGLEVVCEAAKTGTATGRRPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVVHKMWCCPFSHCL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0678600 | OsNip_01t0678600-03 | Chr01 | 27923877 | 27924331 | + | RAP2018-11-26 | ||
| CDS seq | GAGAAATGGATTTCTGAGGCATACAAAGCCATTGACAAGACAGTGAAGGTTGGCGCCATGCACAGGAATACTGGTAACCATCGCAAGTCCCTTCTTGCGAGGAGGAAGAAGGCCATCGAGATACTCCGTGGTTGGTATGTTCCAAACGCTGAACCTGCTGCTACCAGCTAG |
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| Protein seq | EKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWYVPNAEPAATS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.233209 | 18.582325 | 17.454512 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48690 | RBH | 6.240317 | 5.939569 | 2.127317 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0678600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029050 | RBH | 3.928318 | 14.366117 | 7.904094 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028640 | RBH | 1.244758 | 1.044084 | 4.774439 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029030 | RBH | 9.615741 | 0.0 | 10.566897 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028260 | RBH | 1.332459 | 0.114158 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027960 | RBH | 45.193718 | 0.000000 | 22.359957 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0464600 | RBH | 82.8306045 | 17.2132245 | 7.4762965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027700 | RBH | 3.664178 | 0.0 | 1.435302 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0453600 | RBH | 25.7145785 | 1.3909265 | 3.28747 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027990 | RBH | 0.823320 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027860 | RBH | 4.597520 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028160 | RBH | 24.658457 | 18.131947 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028320 | RBH | 8.787996 | 0.0 | 3.947155 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028070 | RBH | 3.557245 | 4.038841 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028550 | RBH | 3.586605 | 0.0 | 4.683180 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028220 | RBH | 13.064489 | 0.000000 | 17.108343 |
