Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0678400 | OGI:01084630 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:27896354-27898031 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCGAACTTGCTAGCCTCATCCTCCCTCGGTGTCTCTCAGATGGCGGGGCTAACCAAGAATCGTAGCACCTCTGCTTGCCGCCTCTGCTTCATCCTCCTCCTCGTCCTATCCGCCACCACCACCACCCTCTCCACCGCGCTGTCCGGACCCTACTCCTCCCGGTGCGCGTCCCCGTCACCAGCTGCCGACCAACACACCGGCGTGGACGACGCCTCTGCGCTCCTCCGATCGTTCCGGATTACCTCTGGCATCTTCTCCGGCGAAGGGGCGGAGACCCTGTTCTCCCCTCGTTCCTACTACTCAATCGTGGGTCAGCACTCGTTCACCGACAGCTTCGCCAGGCGCTCCTTCTCCCTTCTCCCCCACGCCGTGTCCCGCACCACCGAACCCAGCGTCATCCACCTCACAGCCACCCTCACCCTGTTCGGCAGCCGCGTGCAGTTATTCGAGAGCGACCTCACACGTGAATCCGCGAAGGAAGGACATTCCATCTCCTTCTACCTCGACGGATACTACTCGTCCGCAACCACGCAACTCTGTATGGTCGGCAAGGGGAGTGACCTTTCCATTGATGGTTCAGTGAAACATTACATGGACGTCGCTCTCCGCCTCCGGATCCCCAGCATTTCCAGCCTCACCGACCCCTTCGTCACCGGCATCCTCGAGGGCGCCGACTTCGAGCCCTTCTCCCTCCTCACGTACGCCGAGGGGAGCAGCTACAGGTACAGCGAGAACACATCCTGCCTGCCGCTCCCGGTGCCGGAGGCCGCTGCTGCCGCGCGGCGGGCCATCCAGACGACGCCGGACGGCAACTTCTCGTGCGACACTCTCAAGGCGCGGCTCGCCGCGTCGTACCGGCTGGAGTACGGGCGCGCGCACGCGGTGAGCTTCCCCTCGCTGCACGAGCCACGCCTGCACGTCAACCAGCTGCACTGCACCGCGGGCGGCGCGGTGCGAGCGTACGCGGTGTTCTCCAACGACACGGCCAACATGTGGGGATTCAGGGACTTCTTCTCGTCCCAGGAGGCGGCGGTCGTCGCGGACGGGCACTGGGACAGTGACACCAACCGTCTCTGCCTCCGCGCGTGCCTGGTGGCGCGCTCCTCGCCGGCGACGCCGTCAGCCAGCACTGAGCTTGAGGTGCGCGAGTGCGGGATCGGGATGAGCTTCTGGTTCCCGGCCGTGTGGACGGTACGGGACCGGAGTGTCACCGCCGGCGTGCTCTGGAACGCGACCCAGCTGAACAGCAGCGACAACCACGCAAGTGTAGGCTCCGACGTCGCTCTGATAACCGCGTCGAGCTTCGAGGAGTGGAAGGGTAACCTCTCCGACGTGAACTACAACTACAGCTTCACCATGCTTGAGGAGGCCAAGAAGCATTACCTCAAGACCGGGCCGAGCGATAGCAAGAAGAATAGCAAGGGTTCGTTCCCGGGGAACTACTCTCACTCATACCGTGACTTCCGTTTCCCGTTCTTCTTGGAGGGAGAAACAGGGTCTGGAACCGCCTACCCGGTCGCGATCGGCTCGGCGATGGTCGACGGTGACAGGCTGGCTGCCGAACATTCGTTCTCACGGCACGCGGCGGCGCAACTTGAGCAGGGTACACTGGTGAATGTCAGCTATGGTGTGACGTACTACGTTGCACCTAAGAATTGGTCTTCCTTTGGCCAGCTC
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| CDS seq | ATGGCGGGGCTAACCAAGAATCGTAGCACCTCTGCTTGCCGCCTCTGCTTCATCCTCCTCCTCGTCCTATCCGCCACCACCACCACCCTCTCCACCGCGCTGTCCGGACCCTACTCCTCCCGGTGCGCGTCCCCGTCACCAGCTGCCGACCAACACACCGGCGTGGACGACGCCTCTGCGCTCCTCCGATCGTTCCGGATTACCTCTGGCATCTTCTCCGGCGAAGGGGCGGAGACCCTGTTCTCCCCTCGTTCCTACTACTCAATCGTGGGTCAGCACTCGTTCACCGACAGCTTCGCCAGGCGCTCCTTCTCCCTTCTCCCCCACGCCGTGTCCCGCACCACCGAACCCAGCGTCATCCACCTCACAGCCACCCTCACCCTGTTCGGCAGCCGCGTGCAGTTATTCGAGAGCGACCTCACACGTGAATCCGCGAAGGAAGGACATTCCATCTCCTTCTACCTCGACGGATACTACTCGTCCGCAACCACGCAACTCTGTATGGTCGGCAAGGGGAGTGACCTTTCCATTGATGGTTCAGTGAAACATTACATGGACGTCGCTCTCCGCCTCCGGATCCCCAGCATTTCCAGCCTCACCGACCCCTTCGTCACCGGCATCCTCGAGGGCGCCGACTTCGAGCCCTTCTCCCTCCTCACGTACGCCGAGGGGAGCAGCTACAGGTACAGCGAGAACACATCCTGCCTGCCGCTCCCGGTGCCGGAGGCCGCTGCTGCCGCGCGGCGGGCCATCCAGACGACGCCGGACGGCAACTTCTCGTGCGACACTCTCAAGGCGCGGCTCGCCGCGTCGTACCGGCTGGAGTACGGGCGCGCGCACGCGGTGAGCTTCCCCTCGCTGCACGAGCCACGCCTGCACGTCAACCAGCTGCACTGCACCGCGGGCGGCGCGGTGCGAGCGTACGCGGTGTTCTCCAACGACACGGCCAACATGTGGGGATTCAGGGACTTCTTCTCGTCCCAGGAGGCGGCGGTCGTCGCGGACGGGCACTGGGACAGTGACACCAACCGTCTCTGCCTCCGCGCGTGCCTGGTGGCGCGCTCCTCGCCGGCGACGCCGTCAGCCAGCACTGAGCTTGAGGTGCGCGAGTGCGGGATCGGGATGAGCTTCTGGTTCCCGGCCGTGTGGACGGTACGGGACCGGAGTGTCACCGCCGGCGTGCTCTGGAACGCGACCCAGCTGAACAGCAGCGACAACCACGCAAGTGTAGGCTCCGACGTCGCTCTGATAACCGCGTCGAGCTTCGAGGAGTGGAAGGGTAACCTCTCCGACGTGAACTACAACTACAGCTTCACCATGCTTGAGGAGGCCAAGAAGCATTACCTCAAGACCGGGCCGAGCGATAGCAAGAAGAATAGCAAGGGTTCGTTCCCGGGGAACTACTCTCACTCATACCGTGACTTCCGTTTCCCGTTCTTCTTGGAGGGAGAAACAGGGTCTGGAACCGCCTACCCGGTCGCGATCGGCTCGGCGATGGTCGACGGTGACAGGCTGGCTGCCGAACATTCGTTCTCACGGCACGCGGCGGCGCAACTTGAGCAGGGTACACTGGTGAATGTCAGCTATGGTGTGACGTACTACGTTGCACCTAAGAATTGGTCTTCCTTTGGCCAGCTC
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| Protein seq | MAGLTKNRSTSACRLCFILLLVLSATTTTLSTALSGPYSSRCASPSPAADQHTGVDDASALLRSFRITSGIFSGEGAETLFSPRSYYSIVGQHSFTDSFARRSFSLLPHAVSRTTEPSVIHLTATLTLFGSRVQLFESDLTRESAKEGHSISFYLDGYYSSATTQLCMVGKGSDLSIDGSVKHYMDVALRLRIPSISSLTDPFVTGILEGADFEPFSLLTYAEGSSYRYSENTSCLPLPVPEAAAAARRAIQTTPDGNFSCDTLKARLAASYRLEYGRAHAVSFPSLHEPRLHVNQLHCTAGGAVRAYAVFSNDTANMWGFRDFFSSQEAAVVADGHWDSDTNRLCLRACLVARSSPATPSASTELEVRECGIGMSFWFPAVWTVRDRSVTAGVLWNATQLNSSDNHASVGSDVALITASSFEEWKGNLSDVNYNYSFTMLEEAKKHYLKTGPSDSKKNSKGSFPGNYSHSYRDFRFPFFLEGETGSGTAYPVAIGSAMVDGDRLAAEHSFSRHAAAQLEQGTLVNVSYGVTYYVAPKNWSSFGQL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0678400 | OsNip_01t0678400-01 | Chr01 | 27896354 | 27898031 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGGGGCTAACCAAGAATCGTAGCACCTCTGCTTGCCGCCTCTGCTTCATCCTCCTCCTCGTCCTATCCGCCACCACCACCACCCTCTCCACCGCGCTGTCCGGACCCTACTCCTCCCGGTGCGCGTCCCCGTCACCAGCTGCCGACCAACACACCGGCGTGGACGACGCCTCTGCGCTCCTCCGATCGTTCCGGATTACCTCTGGCATCTTCTCCGGCGAAGGGGCGGAGACCCTGTTCTCCCCTCGTTCCTACTACTCAATCGTGGGTCAGCACTCGTTCACCGACAGCTTCGCCAGGCGCTCCTTCTCCCTTCTCCCCCACGCCGTGTCCCGCACCACCGAACCCAGCGTCATCCACCTCACAGCCACCCTCACCCTGTTCGGCAGCCGCGTGCAGTTATTCGAGAGCGACCTCACACGTGAATCCGCGAAGGAAGGACATTCCATCTCCTTCTACCTCGACGGATACTACTCGTCCGCAACCACGCAACTCTGTATGGTCGGCAAGGGGAGTGACCTTTCCATTGATGGTTCAGTGAAACATTACATGGACGTCGCTCTCCGCCTCCGGATCCCCAGCATTTCCAGCCTCACCGACCCCTTCGTCACCGGCATCCTCGAGGGCGCCGACTTCGAGCCCTTCTCCCTCCTCACGTACGCCGAGGGGAGCAGCTACAGGTACAGCGAGAACACATCCTGCCTGCCGCTCCCGGTGCCGGAGGCCGCTGCTGCCGCGCGGCGGGCCATCCAGACGACGCCGGACGGCAACTTCTCGTGCGACACTCTCAAGGCGCGGCTCGCCGCGTCGTACCGGCTGGAGTACGGGCGCGCGCACGCGGTGAGCTTCCCCTCGCTGCACGAGCCACGCCTGCACGTCAACCAGCTGCACTGCACCGCGGGCGGCGCGGTGCGAGCGTACGCGGTGTTCTCCAACGACACGGCCAACATGTGGGGATTCAGGGACTTCTTCTCGTCCCAGGAGGCGGCGGTCGTCGCGGACGGGCACTGGGACAGTGACACCAACCGTCTCTGCCTCCGCGCGTGCCTGGTGGCGCGCTCCTCGCCGGCGACGCCGTCAGCCAGCACTGAGCTTGAGGTGCGCGAGTGCGGGATCGGGATGAGCTTCTGGTTCCCGGCCGTGTGGACGGTACGGGACCGGAGTGTCACCGCCGGCGTGCTCTGGAACGCGACCCAGCTGAACAGCAGCGACAACCACGCAAGTGTAGGCTCCGACGTCGCTCTGATAACCGCGTCGAGCTTCGAGGAGTGGAAGGGTAACCTCTCCGACGTGAACTACAACTACAGCTTCACCATGCTTGAGGAGGCCAAGAAGCATTACCTCAAGACCGGGCCGAGCGATAGCAAGAAGAATAGCAAGGGTTCGTTCCCGGGGAACTACTCTCACTCATACCGTGACTTCCGTTTCCCGTTCTTCTTGGAGGGAGAAACAGGGTCTGGAACCGCCTACCCGGTCGCGATCGGCTCGGCGATGGTCGACGGTGACAGGCTGGCTGCCGAACATTCGTTCTCACGGCACGCGGCGGCGCAACTTGAGCAGGGTACACTGGTGAATGTCAGCTATGGTGTGACGTACTACGTTGCACCTAAGAATTGGTCTTCCTTTGGCCAGCTC
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| Protein seq | MAGLTKNRSTSACRLCFILLLVLSATTTTLSTALSGPYSSRCASPSPAADQHTGVDDASALLRSFRITSGIFSGEGAETLFSPRSYYSIVGQHSFTDSFARRSFSLLPHAVSRTTEPSVIHLTATLTLFGSRVQLFESDLTRESAKEGHSISFYLDGYYSSATTQLCMVGKGSDLSIDGSVKHYMDVALRLRIPSISSLTDPFVTGILEGADFEPFSLLTYAEGSSYRYSENTSCLPLPVPEAAAAARRAIQTTPDGNFSCDTLKARLAASYRLEYGRAHAVSFPSLHEPRLHVNQLHCTAGGAVRAYAVFSNDTANMWGFRDFFSSQEAAVVADGHWDSDTNRLCLRACLVARSSPATPSASTELEVRECGIGMSFWFPAVWTVRDRSVTAGVLWNATQLNSSDNHASVGSDVALITASSFEEWKGNLSDVNYNYSFTMLEEAKKHYLKTGPSDSKKNSKGSFPGNYSHSYRDFRFPFFLEGETGSGTAYPVAIGSAMVDGDRLAAEHSFSRHAAAQLEQGTLVNVSYGVTYYVAPKNWSSFGQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48660 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0678400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029030 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028620 | RBH | 0.369411 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029010 | RBH | 0.0 | 0.785295 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028240 | SBH | 0.933957 | 0.008070 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027940 | SBH | 6.722592 | 2.848381 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0464400 | RBH | 0.04849 | 6.178224 | 0.0854715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027680 | SBH | 0.461407 | 0.0 | 0.062202 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0453400 | RBH | 0.118753 | 7.3657045 | 0.103821 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027970 | RBH | 0.370358 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028140 | SBH | 8.000515 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028040 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028530 | RBH | 1.017380 | 0.0 | 0.232531 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028200 | RBH | 4.527191 | 0.0 | 0.257096 |
