Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0666200 | OGI:01083010 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:27236519-27239874 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTTCGCCGCTGCAAACCTCCGTCTCCTCCGGCTCCGGCTGCTCGGGGCCTAAACCCTCGCCGCGTGTACTAAAAACCCCGGCGGCCCAGGCGGCGGAGGGATGAAGACGAGGTCGCAGACGGCGCCGAAGCCGCTGAAAACGGTGCGGCTGCCTCCTGTCAAGCCGCGGCCCAAGCCGCCGCCGCCGCAGCCGCAGCCGCCGCCGTCCCGGAAGAAGGGGCAGCCCCTCGTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATGTGCGTGTATTATCTGGTTCCCTTTCTCTTTGTGTGGATTTGCCTGGTCTGTCAGTGCGTGCCGTGGCTGGCTCTTGCCACGAGGTGATTGGTGCTGCTGTTACCGGGGGCTTATTTCTTTTTCTTTTTATTAATCGAATTGTTTCCTTGCATAGATTAGAACTTTGTTTTAGGAGCTTTTTTACTCACCAACTTCGAATTGAGTGGTGCCTTGGTGGTAATACGGTGCAGCAAGTTCGCATGCGAAATATTTACGATACTGCCTCCGGTCCGTGGCAATTAGGAAAATGGTTGGGTATGTTAGGGACTGAATTTACTAGGTTTTACAGGGCATCTCAATCTGAGGTGCATTTTTCGATCTGTTCCCTAGTCATGGATGGACTCATTGTTGTAGCTTGTGCAATCAGGTTTCACCCCAAGTTTATGTAGATTGGCATTGTTTACATCTCATTTTGGAAGGCTGGGATCCTAGATTCCTATTTGAGTTATCCTGCGATATTATATAGGATTGCCCTGTTCTTTATTAGAATTTGATTGTTTTTCCTAAAGACGGAGTGAGGCAGGTTATTTTGTGGTCCTATCTTGGGAGTTGGCAACTGAAACTATGCACCACTTTTTTTTTGAGTACCAAAGTGTGTGCTTCCCCTGCAACATATGCGAAGGGCACAGCCTTTACCTAATTGAACAGGCATATCTGATGCTCCTTGTCCACAATTGCATCGAAAGATGTGTGGTTACTGATATAAAATGAATGCATATGTTTTTGACTTGGTCATGCTTTTGATGGTTACGAAGTGTTTTAGCTACTGATAGAGAGTAATGGCAACATTTACATGCTACCATAATTGTCTAGATGCTTTATACCGCATCCAGTCATCAACATTAAACATAGTGCTTACTTCCTTGAGGTGTTTCACATAAATTTAGCCATTTAGGTGTAACCAAAACACAAAAGTTACTCTGTTGTTTTTGCCTCTTATTTTCATATCTTGTACTGAATCAACTCAGTCAAGTTTTACTGAAAAACTGTTATGGTCTGCTGAAGGGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAATGCAAGAAGTAAGTTTCCATCAGTTAACGTTGAAGCTTTAAGCTACTTAGTCATCTAGTAATATATCTTACCCTGCAGGTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGGTTTGTGATTTCACCTTAGTGATGTTTGTGGTCAATTAGGTCTCTAGTTGCTGTAAATTTTCTATCACTCAAGTACCAAACCATGCTTCTCTGTAAGTTGTAACGCATGGCTGTTTTGGTTTGAAGCCAAAACTTGCCCTACCAAAATGTTGGCTTCTTGTATAGTAATTTGGCACCATTTGGTTTGCTACCAAAATTTACCTACACCACACAAAAGTTGCCAAAAATCTGGAAGTGCCAAAACTTGCCTATGTTTTGGCATTGCCAACATTTTGGCATGGTAGCAAACCCAACAAACACATAAAATGATTGATAGAAACATGATGGCACCACAAATCTGTACATGCGGAGTTGAGATGTATATTGACTTATTCTTTTGTTTCAAAATCACTTTTTTTTTAAACCATCAAGCAGAAGTTCCTGCTTCAGTGTATTGTATTAGTAAGGTTTAATTTCAAAGTTTAAAAAGGGATATTTGAGCCATATCTGCTCTTTTTTGTCTACTGTTTATGTGCCTAGTGTTAAAACTAGATAACTAATCTATTTATTCTAAACTTCCTTGAATTAACTGGTACAGCCTACAAAAAAAGTGATCATTGAGTCTAGGCCTCTAGGGAGTAATTCTAACGAAATAGCTGAAGGATCGGATTGACATATATTGCAACTGTAGAAGCTTTGTAGCCGATACGCTCAAACAGCTAAAGTAATACATTGACATGGACTGTAACTGTAGAAGCCCAAGAATGTACTTTGTAGGTGTTACATCTACTGTTCAGTTGGATAATGGTACATGATTGCATATTTACTTTTTCCCCCTTTTGTTCAGTAGGTTCATTCCATGTATGTTTAGTATAGTCGCATTTCAAAGGATTTGGTGCCAACTGCCAAATACCCATGTTTCCTATTTTTTTCATGCTACCAACCCATAGGGAAAACAAAAGAAGGTGCTACTGCTGTGAAGCATATCAAGATCACCTGTGGATTCCTTAGAGCTTTAAATACCAGATATGTAGTTTGGAATTTTCCTTTTTAGAAATCATAGTTTGGACCAAACTGCCAGTTGAACCAGGAAAAGATAGAAATTGTTGGCTCCAGCAGTTTGGGTTCACTCAAAGACCATTCATGCAATCAAAGCCAGAAAAGGCCGGGTGAACTATTTGTGTTGTTTTGAACTTTTGATTGGTAAATATATATTTCCTTTGTTTTTTCAGGCTCTTCTTTTGGGTTCTTAAATAATACTATGCTTTCAAATTATCAGTTTAGTACACAGTGGACTATGTAGGAATTCTGACTCATTGTCAAAATAAATGGTCTAGGCAATACAATATCTCATATCAGATATGTACAGCTTCATTTCACATTTTTGCGCATTGCATTTTAGACATAAACTCATATCATACTTATGTCAACAATTTCACTTTTGTTCATTACACCAGGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGGTGTATTTTCTGCATATATATTGCACGTGTTTTTTTCGTGTCTATTCAATTTTTCCATGCAAAAAATCATACTTACCTTATTTTCAATGCAGGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGGGTAGTTGTTCCGATGGTTCACCCAAGTAATTGGATGGACGAATCAATTGTATATTACAGAACTGAGGCACTGAGCTTTGTAATGGAATCTATATATAGTCAGTTTCCTGCTCATTCTAGAGTGAACTATCGTCTTGTGATAAAGTGATAGCTTTGGATCGAGTATTCGCTGGTACACCACCAGTGCTTGAAATAACT
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| CDS seq | ATGAAGACGAGGTCGCAGACGGCGCCGAAGCCGCTGAAAACGGTGCGGCTGCCTCCTGTCAAGCCGCGGCCCAAGCCGCCGCCGCCGCAGCCGCAGCCGCCGCCGTCCCGGAAGAAGGGGCAGCCCCTCGTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATGGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAATGCAAGAAGTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAG
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| Protein seq | MKTRSQTAPKPLKTVRLPPVKPRPKPPPPQPQPPPSRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKRAEYEKAVAEFDKKKESGELSEESDYD |
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| Function | High mobility group B protein 14 [UniProtKB/Swiss-Prot:O64702] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0666200 | OsNip_01t0666200-01 | Chr01 | 27236519 | 27239874 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAGACGAGGTCGCAGACGGCGCCGAAGCCGCTGAAAACGGTGCGGCTGCCTCCTGTCAAGCCGCGGCCCAAGCCGCCGCCGCCGCAGCCGCAGCCGCCGCCGTCCCGGAAGAAGGGGCAGCCCCTCGTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATGGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAATGCAAGAAGTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAG
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| Protein seq | MKTRSQTAPKPLKTVRLPPVKPRPKPPPPQPQPPPSRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKRAEYEKAVAEFDKKKESGELSEESDYD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.797346 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47600 | RBH | 0.500592 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0666200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028300 | RBH | 1.100225 | 0.000000 | 3.917983 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027830 | RBH | 0.0 | 0.0 | 0.419735 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028270 | RBH | 1.529646 | 2.769516 | 3.701168 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027490 | RBH | 0.0 | 0.233198 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027270 | RBH | 5.467051 | 4.635027 | 4.091009 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0454300 | RBH | 3.36109 | 15.7376975 | 20.0462 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026970 | RBH | 0.300601 | 0.645896 | 0.560469 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0443000 | RBH | 5.1916785 | 39.6704655 | 32.995981 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027220 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027140 | RBH | 0.610753 | 8.432068 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027450 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027530 | RBH | 0.742250 | 0.635573 | 0.747958 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027340 | RBH | 0.000000 | 1.861299 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027720 | RBH | 0.414634 | 1.178050 | 0.466878 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027460 | RBH | 0.000000 | 0.000000 | 2.090391 |
