Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0660200 | OGI:01081980 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:26885484-26886719 | ||||||||
| Gene Symbol | C10728, OsChib3a, Chib3a, OsPR31, PR31, PR8 | ||||||||||
| DNA seq | ACCACCAAGCAAATCACGTAGTCCCTCCACACACCTCGTACCTCGATCTCGAAGCTTAATTACTAGTTAACATTAACAATGGCTGCTAATAAGCTCAAGTTCTCCCCTCTCCTTGCCCTCTTCCTCCTCGCCGGCATAGCCGTCACCTCCCGTGCCGGCGACATCGCCGTGTACTGGGGCCAGAACGGCGACGAGGGCAGCCTGGCCGACGCCTGCAACTCCGGCCTATACGCGTACGTCATGGTCGCCTTCCTCAGCACCTTCGGCAACGGCCAGACCCCTGTCCTCAACCTCGCCGGGCACTGCGAACCAAGCTCCGGCGGCTGCACCGGCCAGAGCTCGGACATCCAGACGTGCCAGTCGCTGGGCGTCAAGGTCATCCTGTCCATCGGCGGCGGCGCCGGCAGCTACGGGCTGTCGTCCACCCAGGACGCCCAGGACGTGGCCGACTACCTGTGGAACAACTTCCTCGGCGGCAGCTCGGGCTCCCGGCCGCTCGGCGACGCCGTGCTGGACGGCGTCGACTTCGACATCGAGACCGGCAACCCGGCGCACTACGACGAGCTCGCCACGTTCCTGTCGCGGTACAGCGCGCAGGGGGGCGGCAAGAAGGTGATCCTGACGGCGGCGCCGCAGTGCCCCTACCCGGACGCGTCGCTGGGGCCGGCGCTGCAGACGGGGCTGTTCGACAGCGTGTGGGTGCAATTCTACAACAACCCGCCGTGCCAGTACGCCAACGGCGACGCCAGCAACCTGGTGAGCGCGTGGAACACGTGGACCGGCGGCGTCAGCGCCGGGAGCTTCTACGTCGGCGTGCCGGCGGCGGAGGCCGCGGCGGGGAGCGGGTACGTGGCACCCGGCGACCTGACGTCGGCGGTGCTCCCCGCCGTGCAGGGCAACGCCAAGTACGGCGGCATCATGGTGTGGAACCGGTTCTACGACGTGCAGAACAACTTCAGCAACCAGGTGAAGAGCAGCGTCTGAGCTATAGCCTCAACCTCAAGCCCCCAAGCCTGAGTAATTAACTTACGTGACACGTATACTTATTACTTGCACAGTGGTTGAGTTGGACTATAAATAAGAGGAGATCCGTTCATACGCATCTGTAATATAGTAGTAGTAATAAGCAGTTATGTATGCACAACCCACATGGTGTACTTTGTGTAACTCTGTGTTTGATCATGGGAGTGTATTTGCCGATATAAATTAAATAAGGAGAATGATTTGCATTAAGCC
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| CDS seq | ATGGCTGCTAATAAGCTCAAGTTCTCCCCTCTCCTTGCCCTCTTCCTCCTCGCCGGCATAGCCGTCACCTCCCGTGCCGGCGACATCGCCGTGTACTGGGGCCAGAACGGCGACGAGGGCAGCCTGGCCGACGCCTGCAACTCCGGCCTATACGCGTACGTCATGGTCGCCTTCCTCAGCACCTTCGGCAACGGCCAGACCCCTGTCCTCAACCTCGCCGGGCACTGCGAACCAAGCTCCGGCGGCTGCACCGGCCAGAGCTCGGACATCCAGACGTGCCAGTCGCTGGGCGTCAAGGTCATCCTGTCCATCGGCGGCGGCGCCGGCAGCTACGGGCTGTCGTCCACCCAGGACGCCCAGGACGTGGCCGACTACCTGTGGAACAACTTCCTCGGCGGCAGCTCGGGCTCCCGGCCGCTCGGCGACGCCGTGCTGGACGGCGTCGACTTCGACATCGAGACCGGCAACCCGGCGCACTACGACGAGCTCGCCACGTTCCTGTCGCGGTACAGCGCGCAGGGGGGCGGCAAGAAGGTGATCCTGACGGCGGCGCCGCAGTGCCCCTACCCGGACGCGTCGCTGGGGCCGGCGCTGCAGACGGGGCTGTTCGACAGCGTGTGGGTGCAATTCTACAACAACCCGCCGTGCCAGTACGCCAACGGCGACGCCAGCAACCTGGTGAGCGCGTGGAACACGTGGACCGGCGGCGTCAGCGCCGGGAGCTTCTACGTCGGCGTGCCGGCGGCGGAGGCCGCGGCGGGGAGCGGGTACGTGGCACCCGGCGACCTGACGTCGGCGGTGCTCCCCGCCGTGCAGGGCAACGCCAAGTACGGCGGCATCATGGTGTGGAACCGGTTCTACGACGTGCAGAACAACTTCAGCAACCAGGTGAAGAGCAGCGTCTGA
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| Protein seq | MAANKLKFSPLLALFLLAGIAVTSRAGDIAVYWGQNGDEGSLADACNSGLYAYVMVAFLSTFGNGQTPVLNLAGHCEPSSGGCTGQSSDIQTCQSLGVKVILSIGGGAGSYGLSSTQDAQDVADYLWNNFLGGSSGSRPLGDAVLDGVDFDIETGNPAHYDELATFLSRYSAQGGGKKVILTAAPQCPYPDASLGPALQTGLFDSVWVQFYNNPPCQYANGDASNLVSAWNTWTGGVSAGSFYVGVPAAEAAAGSGYVAPGDLTSAVLPAVQGNAKYGGIMVWNRFYDVQNNFSNQVKSSV |
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| Function | Acidic endochitinase [UniProtKB/Swiss-Prot:P51614] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0660200 | OsNip_01t0660200-01 | Chr01 | 26885484 | 26886719 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCTGCTAATAAGCTCAAGTTCTCCCCTCTCCTTGCCCTCTTCCTCCTCGCCGGCATAGCCGTCACCTCCCGTGCCGGCGACATCGCCGTGTACTGGGGCCAGAACGGCGACGAGGGCAGCCTGGCCGACGCCTGCAACTCCGGCCTATACGCGTACGTCATGGTCGCCTTCCTCAGCACCTTCGGCAACGGCCAGACCCCTGTCCTCAACCTCGCCGGGCACTGCGAACCAAGCTCCGGCGGCTGCACCGGCCAGAGCTCGGACATCCAGACGTGCCAGTCGCTGGGCGTCAAGGTCATCCTGTCCATCGGCGGCGGCGCCGGCAGCTACGGGCTGTCGTCCACCCAGGACGCCCAGGACGTGGCCGACTACCTGTGGAACAACTTCCTCGGCGGCAGCTCGGGCTCCCGGCCGCTCGGCGACGCCGTGCTGGACGGCGTCGACTTCGACATCGAGACCGGCAACCCGGCGCACTACGACGAGCTCGCCACGTTCCTGTCGCGGTACAGCGCGCAGGGGGGCGGCAAGAAGGTGATCCTGACGGCGGCGCCGCAGTGCCCCTACCCGGACGCGTCGCTGGGGCCGGCGCTGCAGACGGGGCTGTTCGACAGCGTGTGGGTGCAATTCTACAACAACCCGCCGTGCCAGTACGCCAACGGCGACGCCAGCAACCTGGTGAGCGCGTGGAACACGTGGACCGGCGGCGTCAGCGCCGGGAGCTTCTACGTCGGCGTGCCGGCGGCGGAGGCCGCGGCGGGGAGCGGGTACGTGGCACCCGGCGACCTGACGTCGGCGGTGCTCCCCGCCGTGCAGGGCAACGCCAAGTACGGCGGCATCATGGTGTGGAACCGGTTCTACGACGTGCAGAACAACTTCAGCAACCAGGTGAAGAGCAGCGTCTGA
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| Protein seq | MAANKLKFSPLLALFLLAGIAVTSRAGDIAVYWGQNGDEGSLADACNSGLYAYVMVAFLSTFGNGQTPVLNLAGHCEPSSGGCTGQSSDIQTCQSLGVKVILSIGGGAGSYGLSSTQDAQDVADYLWNNFLGGSSGSRPLGDAVLDGVDFDIETGNPAHYDELATFLSRYSAQGGGKKVILTAAPQCPYPDASLGPALQTGLFDSVWVQFYNNPPCQYANGDASNLVSAWNTWTGGVSAGSFYVGVPAAEAAAGSGYVAPGDLTSAVLPAVQGNAKYGGIMVWNRFYDVQNNFSNQVKSSV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.246055 | 3.845461 | 16.659128 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47070 | RBH | 1.477073 | 2.515171 | 4.170293 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0660200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027940 | RBH | 0.0 | 0.0 | 1.497654 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027450 | RBH | 0.0 | 3.384164 | 4.255682 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027900 | RBH | 0.662645 | 5.032080 | 15.773364 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027140 | RBH | 0.386678 | 0.092965 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026870 | RBH | 0.0 | 8.163348 | 38.516289 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0448400 | RBH | 3.8566575 | 19.4600335 | 2.9782375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026570 | RBH | 0.342600 | 0.0 | 2.035012 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0437400 | RBH | 13.4159865 | 34.7286225 | 0.1367585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026820 | RBH | 0.554042 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026740 | RBH | 0.143736 | 11.848041 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027070 | RBH | 1.856371 | 12.439423 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027140 | RBH | 0.0 | 0.376244 | 0.904648 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0026950 | RBH | 0.092423 | 1.092727 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027350 | RBH | 0.238098 | 1.401776 | 6.328580 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027080 | RBH | 1.480660 | 37.350151 | 46.744080 |
