Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0654800 | OGI:01081360 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:26565249-26565524 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCCCGCGCCCGAGGCTGCGTGTCACTCTCCCATCTGCATCCACGCATACGAGAGAGAGAGATTCGCCGGTTCGGTCGCCGCCGGCAACAGGCGTCGCGAGTGAGAGAGATGGCGCTGACCAACCTCGTGCTGGGGGCGGCGGTGTTGGCGGCAGCGGCGCTCCTCTTCGCCACCGACATCCGCAAGTCCGGCGCGATGTTCCGCCGCAACGCCCGCAAGATTTGGGCCTGGCTCGACGAGGAAATGAAATCCGCATCCGCCGTGTCCAGGTAA |
||||||||||
| CDS seq | ATGCCCCGCGCCCGAGGCTGCGTGTCACTCTCCCATCTGCATCCACGCATACGAGAGAGAGAGATTCGCCGGTTCGGTCGCCGCCGGCAACAGGCGTCGCGAGTGAGAGAGATGGCGCTGACCAACCTCGTGCTGGGGGCGGCGGTGTTGGCGGCAGCGGCGCTCCTCTTCGCCACCGACATCCGCAAGTCCGGCGCGATGTTCCGCCGCAACGCCCGCAAGATTTGGGCCTGGCTCGACGAGGAAATGAAATCCGCATCCGCCGTGTCCAGGTAA |
||||||||||
| Protein seq | MPRARGCVSLSHLHPRIREREIRRFGRRRQQASRVREMALTNLVLGAAVLAAAALLFATDIRKSGAMFRRNARKIWAWLDEEMKSASAVSR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0654800 | OsNip_01t0654800-00 | Chr01 | 26565249 | 26565524 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCCCGCGCCCGAGGCTGCGTGTCACTCTCCCATCTGCATCCACGCATACGAGAGAGAGAGATTCGCCGGTTCGGTCGCCGCCGGCAACAGGCGTCGCGAGTGAGAGAGATGGCGCTGACCAACCTCGTGCTGGGGGCGGCGGTGTTGGCGGCAGCGGCGCTCCTCTTCGCCACCGACATCCGCAAGTCCGGCGCGATGTTCCGCCGCAACGCCCGCAAGATTTGGGCCTGGCTCGACGAGGAAATGAAATCCGCATCCGCCGTGTCCAGGTAA
More
|
|||||||
| Protein seq | MPRARGCVSLSHLHPRIREREIRRFGRRRQQASRVREMALTNLVLGAAVLAAAALLFATDIRKSGAMFRRNARKIWAWLDEEMKSASAVSR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g46650 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0654800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0444800 | SBH | 0.0542255 | 0.053188 | 0.281486 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0433900 | SBH | 0.0870545 | 0 | 0.394014 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
